/gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 20:30 on 2019-04-09
Alignment
Sequence pairs analysed in total
13795713
Paired-end alignments with a unique best hit
5070163
Pairs without alignments under any condition
6406379
Pairs that did not map uniquely
2319171
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
142342778
Methylated C's in CpG context
15059429
Methylated C's in CHG context
671225
Methylated C's in CHH context
2059702
Methylated C's in Unknown context
76501
Unmethylated C's in CpG context
5460824
Unmethylated C's in CHG context
32006667
Unmethylated C's in CHH context
87084931
Unmethylated C's in Unknown context
435443
Percentage methylation (CpG context)
73.4%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1285757
original top strand
CTOT
1245006
complementary to original top strand
CTOB
1247818
complementary to original bottom strand
OB
1291582
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions