cvir_bsseq_all_pe_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7964108 lines in total Total number of methylation call strings processed: 15928216 Final Cytosine Methylation Report ================================= Total number of C's analysed: 145927935 Total methylated C's in CpG context: 15041047 Total methylated C's in CHG context: 689452 Total methylated C's in CHH context: 2237441 Total C to T conversions in CpG context: 5505093 Total C to T conversions in CHG context: 32294077 Total C to T conversions in CHH context: 90160825 C methylated in CpG context: 73.2% C methylated in CHG context: 2.1% C methylated in CHH context: 2.4%