CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 146185 63263 69.80 209448 2 161282 62433 72.09 223715 3 156500 61792 71.69 218292 4 152738 59808 71.86 212546 5 152194 59818 71.79 212012 6 153476 59319 72.12 212795 7 158862 63466 71.45 222328 8 157985 60175 72.42 218160 9 155924 58196 72.82 214120 10 163173 59606 73.24 222779 11 164613 60375 73.17 224988 12 164496 58775 73.68 223271 13 165821 59217 73.69 225038 14 166800 60111 73.51 226911 15 168090 58295 74.25 226385 16 169884 58952 74.24 228836 17 168465 59363 73.94 227828 18 167123 58399 74.10 225522 19 168237 57305 74.59 225542 20 167215 58286 74.15 225501 21 167637 57689 74.40 225326 22 169266 58104 74.45 227370 23 169255 58698 74.25 227953 24 168835 58098 74.40 226933 25 170312 58759 74.35 229071 26 169578 59424 74.05 229002 27 166097 57812 74.18 223909 28 169284 58893 74.19 228177 29 167106 58089 74.21 225195 30 166218 56820 74.52 223038 31 168228 58564 74.18 226792 32 167662 57761 74.38 225423 33 166046 57014 74.44 223060 34 168525 57765 74.47 226290 35 164875 57444 74.16 222319 36 163751 56419 74.37 220170 37 163344 56534 74.29 219878 38 163338 56989 74.13 220327 39 162475 56148 74.32 218623 40 163119 56406 74.31 219525 41 159808 55783 74.13 215591 42 156506 54540 74.16 211046 43 157471 54377 74.33 211848 44 155809 55022 73.90 210831 45 153772 53335 74.25 207107 46 154718 54148 74.08 208866 47 153347 54550 73.76 207897 48 151008 52866 74.07 203874 49 149817 52644 74.00 202461 50 147572 52733 73.67 200305 51 143498 50826 73.84 194324 52 143838 50768 73.91 194606 53 142903 50124 74.03 193027 54 140454 49869 73.80 190323 55 140742 49323 74.05 190065 56 139490 49227 73.91 188717 57 137997 48818 73.87 186815 58 134984 48623 73.52 183607 59 132530 47511 73.61 180041 60 130381 47063 73.48 177444 61 129932 46584 73.61 176516 62 126507 45558 73.52 172065 63 124737 45168 73.42 169905 64 122889 44489 73.42 167378 65 120828 43938 73.33 164766 66 118399 42551 73.56 160950 67 117783 42727 73.38 160510 68 115322 41857 73.37 157179 69 112202 41570 72.97 153772 70 111822 41489 72.94 153311 71 109735 40824 72.89 150559 72 105819 39786 72.68 145605 73 104394 39247 72.68 143641 74 102656 38801 72.57 141457 75 98849 36979 72.78 135828 76 96227 36513 72.49 132740 77 91630 35197 72.25 126827 78 84435 32269 72.35 116704 79 67890 26053 72.27 93943 80 30778 12057 71.85 42835 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19692 328451 5.66 348143 2 12646 337022 3.62 349668 3 11406 346479 3.19 357885 4 9129 345566 2.57 354695 5 9928 335939 2.87 345867 6 10551 342328 2.99 352879 7 8397 346645 2.37 355042 8 8559 353782 2.36 362341 9 7842 349126 2.20 356968 10 7821 347059 2.20 354880 11 7995 348670 2.24 356665 12 7465 353382 2.07 360847 13 7298 350395 2.04 357693 14 7410 350862 2.07 358272 15 7260 360475 1.97 367735 16 7034 357431 1.93 364465 17 7301 353024 2.03 360325 18 6917 361885 1.88 368802 19 6836 357193 1.88 364029 20 6854 355902 1.89 362756 21 6692 360685 1.82 367377 22 6925 357012 1.90 363937 23 6914 358537 1.89 365451 24 6684 363400 1.81 370084 25 6799 358086 1.86 364885 26 6946 353894 1.92 360840 27 6840 362115 1.85 368955 28 6645 357142 1.83 363787 29 6913 359675 1.89 366588 30 6725 354332 1.86 361057 31 6541 356558 1.80 363099 32 6650 353405 1.85 360055 33 6664 356846 1.83 363510 34 6551 349801 1.84 356352 35 6647 345691 1.89 352338 36 6428 347214 1.82 353642 37 6468 340246 1.87 346714 38 6727 338542 1.95 345269 39 6247 344714 1.78 350961 40 6180 339603 1.79 345783 41 6227 336484 1.82 342711 42 5901 338207 1.71 344108 43 5880 330629 1.75 336509 44 6036 324461 1.83 330497 45 5950 331037 1.77 336987 46 5776 322672 1.76 328448 47 5949 320103 1.82 326052 48 5731 318787 1.77 324518 49 5711 314414 1.78 320125 50 6440 307383 2.05 313823 51 5825 311824 1.83 317649 52 5991 303534 1.94 309525 53 5663 300237 1.85 305900 54 5390 300750 1.76 306140 55 5517 295350 1.83 300867 56 5506 291936 1.85 297442 57 5249 293762 1.76 299011 58 5085 284526 1.76 289611 59 5270 281706 1.84 286976 60 5072 281634 1.77 286706 61 5061 272549 1.82 277610 62 5042 266790 1.85 271832 63 4869 267570 1.79 272439 64 4862 261757 1.82 266619 65 4751 256636 1.82 261387 66 4747 255149 1.83 259896 67 4579 249265 1.80 253844 68 4608 245095 1.85 249703 69 4479 241998 1.82 246477 70 4563 236824 1.89 241387 71 4406 232961 1.86 237367 72 4294 230498 1.83 234792 73 4275 224002 1.87 228277 74 4341 218580 1.95 222921 75 4116 217518 1.86 221634 76 3946 208575 1.86 212521 77 4021 197849 1.99 201870 78 3682 182575 1.98 186257 79 2970 144989 2.01 147959 80 1403 66449 2.07 67852 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 51156 986803 4.93 1037959 2 47157 979737 4.59 1026894 3 42843 994410 4.13 1037253 4 38761 992892 3.76 1031653 5 37598 969574 3.73 1007172 6 38087 948568 3.86 986655 7 33856 953658 3.43 987514 8 32701 945148 3.34 977849 9 34287 958134 3.45 992421 10 34401 970485 3.42 1004886 11 32420 949621 3.30 982041 12 31736 952085 3.23 983821 13 31151 966779 3.12 997930 14 30546 959664 3.08 990210 15 30533 970040 3.05 1000573 16 30483 981017 3.01 1011500 17 29632 970314 2.96 999946 18 29286 979605 2.90 1008891 19 29463 988482 2.89 1017945 20 28507 976390 2.84 1004897 21 29240 981885 2.89 1011125 22 29420 977091 2.92 1006511 23 28015 973426 2.80 1001441 24 27662 974425 2.76 1002087 25 27823 974511 2.78 1002334 26 26481 965381 2.67 991862 27 26454 968003 2.66 994457 28 25883 969020 2.60 994903 29 24924 954653 2.54 979577 30 23918 953453 2.45 977371 31 23693 972511 2.38 996204 32 22421 948094 2.31 970515 33 22105 942984 2.29 965089 34 21330 948130 2.20 969460 35 20417 940096 2.13 960513 36 19657 937566 2.05 957223 37 19537 938884 2.04 958421 38 18617 925528 1.97 944145 39 18259 925212 1.94 943471 40 18554 928435 1.96 946989 41 17705 914728 1.90 932433 42 17239 910890 1.86 928129 43 17180 911680 1.85 928860 44 16919 894404 1.86 911323 45 16607 887851 1.84 904458 46 16558 892242 1.82 908800 47 16530 880550 1.84 897080 48 16290 881595 1.81 897885 49 16426 880997 1.83 897423 50 17595 849242 2.03 866837 51 15631 850176 1.81 865807 52 16339 850272 1.89 866611 53 15532 825863 1.85 841395 54 15090 816579 1.81 831669 55 15238 815732 1.83 830970 56 14666 802837 1.79 817503 57 14779 803080 1.81 817859 58 14405 789388 1.79 803793 59 14512 782311 1.82 796823 60 14365 768620 1.83 782985 61 14112 758782 1.83 772894 62 13871 745232 1.83 759103 63 13889 740901 1.84 754790 64 13724 740539 1.82 754263 65 13258 719389 1.81 732647 66 12958 705728 1.80 718686 67 12987 702107 1.82 715094 68 12774 696268 1.80 709042 69 12682 682009 1.83 694691 70 12412 666766 1.83 679178 71 12245 654900 1.84 667145 72 12071 645528 1.84 657599 73 11914 629340 1.86 641254 74 11731 611997 1.88 623728 75 11479 598601 1.88 610080 76 11278 585365 1.89 596643 77 11029 555434 1.95 566463 78 10178 512949 1.95 523127 79 8588 413655 2.03 422243 80 3640 181456 1.97 185096 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 102220 48293 67.91 150513 2 96827 40055 70.74 136882 3 90381 37204 70.84 127585 4 79498 34640 69.65 114138 5 77774 32926 70.26 110700 6 77032 32770 70.16 109802 7 77988 34874 69.10 112862 8 76242 31314 70.89 107556 9 74822 30079 71.33 104901 10 75977 30348 71.46 106325 11 75652 30138 71.51 105790 12 72336 28710 71.59 101046 13 72592 27836 72.28 100428 14 71603 27853 71.99 99456 15 70901 26643 72.69 97544 16 70026 26122 72.83 96148 17 67540 25782 72.37 93322 18 65136 24707 72.50 89843 19 64429 23521 73.26 87950 20 62164 23257 72.77 85421 21 61199 22751 72.90 83950 22 59294 21967 72.97 81261 23 58496 21722 72.92 80218 24 57704 20930 73.38 78634 25 56915 20895 73.15 77810 26 54854 20571 72.73 75425 27 53058 19523 73.10 72581 28 52746 19343 73.17 72089 29 51240 18689 73.27 69929 30 49411 18281 72.99 67692 31 49264 18172 73.05 67436 32 48040 17473 73.33 65513 33 46507 17172 73.03 63679 34 46281 17213 72.89 63494 35 44614 16449 73.06 61063 36 43175 15730 73.30 58905 37 42183 15892 72.64 58075 38 41324 15374 72.88 56698 39 40630 15085 72.92 55715 40 40258 14880 73.01 55138 41 37932 14332 72.58 52264 42 36444 13745 72.61 50189 43 36169 13279 73.15 49448 44 35386 13196 72.84 48582 45 34157 12763 72.80 46920 46 33395 12752 72.37 46147 47 32893 12639 72.24 45532 48 31798 11912 72.75 43710 49 31122 11755 72.58 42877 50 30244 11470 72.50 41714 51 28909 10866 72.68 39775 52 28550 10925 72.32 39475 53 27818 10541 72.52 38359 54 26995 10312 72.36 37307 55 26448 10008 72.55 36456 56 26089 9969 72.35 36058 57 25553 9839 72.20 35392 58 24491 9525 72.00 34016 59 23787 9117 72.29 32904 60 22969 9030 71.78 31999 61 22619 8901 71.76 31520 62 21845 8587 71.78 30432 63 21388 8293 72.06 29681 64 20922 8043 72.23 28965 65 20234 7809 72.15 28043 66 19232 7494 71.96 26726 67 18978 7445 71.82 26423 68 18452 7401 71.37 25853 69 18020 7132 71.64 25152 70 17583 7027 71.45 24610 71 17460 6887 71.71 24347 72 16368 6683 71.01 23051 73 16119 6598 70.96 22717 74 15616 6486 70.65 22102 75 14900 6115 70.90 21015 76 14458 5866 71.14 20324 77 13535 5650 70.55 19185 78 12529 5398 69.89 17927 79 10731 4723 69.44 15454 80 7083 3205 68.85 10288 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 16951 241017 6.57 257968 2 8923 204863 4.17 213786 3 9086 200090 4.34 209176 4 5311 191481 2.70 196792 5 6209 176586 3.40 182795 6 7531 174943 4.13 182474 7 4633 176548 2.56 181181 8 4927 180278 2.66 185205 9 4036 167592 2.35 171628 10 4007 165430 2.36 169437 11 3773 162999 2.26 166772 12 3450 162452 2.08 165902 13 3306 158178 2.05 161484 14 3295 154166 2.09 157461 15 3155 155512 1.99 158667 16 2967 151466 1.92 154433 17 2886 145439 1.95 148325 18 2797 144143 1.90 146940 19 2637 139763 1.85 142400 20 2559 134599 1.87 137158 21 2459 133184 1.81 135643 22 2360 128612 1.80 130972 23 2360 127410 1.82 129770 24 2369 125766 1.85 128135 25 2266 120927 1.84 123193 26 2193 117414 1.83 119607 27 2153 117735 1.80 119888 28 2096 113220 1.82 115316 29 2161 112957 1.88 115118 30 1951 107965 1.77 109916 31 1858 106312 1.72 108170 32 1876 102856 1.79 104732 33 1806 101880 1.74 103686 34 1796 97557 1.81 99353 35 1719 94949 1.78 96668 36 1681 93081 1.77 94762 37 1616 89559 1.77 91175 38 1592 87291 1.79 88883 39 1618 87267 1.82 88885 40 1470 84698 1.71 86168 41 1508 82437 1.80 83945 42 1437 80261 1.76 81698 43 1403 78218 1.76 79621 44 1426 74823 1.87 76249 45 1302 74814 1.71 76116 46 1261 72117 1.72 73378 47 1275 70473 1.78 71748 48 1224 68582 1.75 69806 49 1142 66810 1.68 67952 50 1238 64775 1.88 66013 51 1122 63703 1.73 64825 52 1039 61926 1.65 62965 53 1113 59489 1.84 60602 54 1006 58928 1.68 59934 55 979 57437 1.68 58416 56 1015 55822 1.79 56837 57 1017 55996 1.78 57013 58 896 53186 1.66 54082 59 886 51954 1.68 52840 60 897 51005 1.73 51902 61 932 48995 1.87 49927 62 831 47856 1.71 48687 63 796 46498 1.68 47294 64 824 45486 1.78 46310 65 822 43971 1.84 44793 66 742 43215 1.69 43957 67 769 41543 1.82 42312 68 763 40391 1.85 41154 69 753 39755 1.86 40508 70 692 38952 1.75 39644 71 733 37490 1.92 38223 72 674 36791 1.80 37465 73 662 35799 1.82 36461 74 683 34455 1.94 35138 75 617 34097 1.78 34714 76 642 32068 1.96 32710 77 573 30701 1.83 31274 78 518 28227 1.80 28745 79 397 24376 1.60 24773 80 293 16291 1.77 16584 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39562 747146 5.03 786708 2 30654 610852 4.78 641506 3 22766 580932 3.77 603698 4 18168 551397 3.19 569565 5 19049 527237 3.49 546286 6 20824 500726 3.99 521550 7 14060 494160 2.77 508220 8 13834 482816 2.79 496650 9 13357 483288 2.69 496645 10 12536 478967 2.55 491503 11 11758 460925 2.49 472683 12 10564 453180 2.28 463744 13 10341 451936 2.24 462277 14 9846 441916 2.18 451762 15 9233 438675 2.06 447908 16 8747 433202 1.98 441949 17 8291 418447 1.94 426738 18 7865 413451 1.87 421316 19 7508 402798 1.83 410306 20 7156 389649 1.80 396805 21 7005 382476 1.80 389481 22 6646 371484 1.76 378130 23 6647 363218 1.80 369865 24 6170 354947 1.71 361117 25 6042 347325 1.71 353367 26 6059 337114 1.77 343173 27 5882 331937 1.74 337819 28 5650 324190 1.71 329840 29 5443 314052 1.70 319495 30 5409 307376 1.73 312785 31 5182 307115 1.66 312297 32 5100 293450 1.71 298550 33 5048 285223 1.74 290271 34 4859 281924 1.69 286783 35 4755 274590 1.70 279345 36 4696 269597 1.71 274293 37 4571 264577 1.70 269148 38 4397 255659 1.69 260056 39 4399 250629 1.72 255028 40 4294 247305 1.71 251599 41 4234 240265 1.73 244499 42 3999 233662 1.68 237661 43 3967 229896 1.70 233863 44 3832 222093 1.70 225925 45 3795 216238 1.72 220033 46 3793 214255 1.74 218048 47 3609 209432 1.69 213041 48 3503 207382 1.66 210885 49 3453 204126 1.66 207579 50 3338 193678 1.69 197016 51 3278 190262 1.69 193540 52 3194 188264 1.67 191458 53 3146 179136 1.73 182282 54 3042 175067 1.71 178109 55 2993 172554 1.70 175547 56 2874 167547 1.69 170421 57 2957 166113 1.75 169070 58 2758 160024 1.69 162782 59 2703 158195 1.68 160898 60 2564 152281 1.66 154845 61 2607 148726 1.72 151333 62 2492 144387 1.70 146879 63 2593 141684 1.80 144277 64 2551 140579 1.78 143130 65 2371 134935 1.73 137306 66 2284 130717 1.72 133001 67 2214 128921 1.69 131135 68 2189 128039 1.68 130228 69 2386 124274 1.88 126660 70 2063 119754 1.69 121817 71 1988 116399 1.68 118387 72 1995 114699 1.71 116694 73 1898 110045 1.70 111943 74 1906 105852 1.77 107758 75 1770 103568 1.68 105338 76 1878 100228 1.84 102106 77 1696 95484 1.75 97180 78 1542 88521 1.71 90063 79 1286 77716 1.63 79002 80 887 51262 1.70 52149