/gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/outputs/20190312_cvir_gonad_bismark/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 16:35 on 2019-04-09
Alignment
Sequence pairs analysed in total
27591427
Paired-end alignments with a unique best hit
7964108
Pairs without alignments under any condition
15945689
Pairs that did not map uniquely
3681630
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
221887219
Methylated C's in CpG context
23206177
Methylated C's in CHG context
1030809
Methylated C's in CHH context
3473660
Methylated C's in Unknown context
127986
Unmethylated C's in CpG context
8314955
Unmethylated C's in CHG context
49507573
Unmethylated C's in CHH context
136354045
Unmethylated C's in Unknown context
700229
Percentage methylation (CpG context)
73.6%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
2.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2015219
original top strand
CTOT
1962001
complementary to original top strand
CTOB
1965430
complementary to original bottom strand
OB
2021458
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions