#-----Location of Executables Used by MAKER/EVALUATOR makeblastdb=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/blast/bin/makeblastdb #location of NCBI+ makeblastdb executable blastn=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/blast/bin/blastn #location of NCBI+ blastn executable blastx=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/blast/bin/blastx #location of NCBI+ blastx executable tblastx=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/blast/bin/tblastx #location of NCBI+ tblastx executable formatdb= #location of NCBI formatdb executable blastall= #location of NCBI blastall executable xdformat= #location of WUBLAST xdformat executable blasta= #location of WUBLAST blasta executable RepeatMasker=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/RepeatMasker/RepeatMasker #location of RepeatMasker executable exonerate=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/exonerate/bin/exonerate #location of exonerate executable #-----Ab-initio Gene Prediction Algorithms snap=/gscratch/srlab/programs/maker-2.31.10/bin/../exe/snap/snap #location of snap executable gmhmme3= #location of eukaryotic genemark executable gmhmmp= #location of prokaryotic genemark executable augustus=/gscratch/srlab/programs/Augustus-3.3.2/bin/augustus #location of augustus executable fgenesh= #location of fgenesh executable tRNAscan-SE= #location of trnascan executable snoscan= #location of snoscan executable #-----Other Algorithms probuild= #location of probuild executable (required for genemark)