/gannet/Atumefaciens/20190228_pgen_busco_metazoa_augustus

Run BUSCO on Pgenerosa_v071 (scaffolds >10kbp) genome assembly using the BUSCO metazoa database and Augustus human database on Mox.


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FILES

- 20190228_pgen_busco_metazoa_augustus.sh: SBATCH script for job submission on Mox.

- augustus: Directory structure generated/used by Augustus.

- config.ini: BUSCO configuration file. See SBATCH script for how this was modified.

- run_Pgenerosa_v071_genome_snap02.all.makershort_summary_Pgenerosa_v071_genome_snap02.all.maker.txt: BUSCO output file.

- slurm-652846.out: SLURM output file (i.e. stderr/stdout).

- system_path.log: Contents of Sam's Mox system $PATH.

- tmp_opt_BUSCO_Pgenerosa_v071_genome_snap02.all.maker_1223389482: Temporary BUSCO folder generated during processing. Can probably be deleted...


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Notebook:

https://robertslab.github.io/sams-notebook/2019/03/02/Genome-Assessment-BUSCO-Metazoa-on-P.generosa-v071-on-Mox.html