pgen_bsseq_all_R1_bismark_bt2.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.19.0
Bismark result file: single-end (SAM format)
Output specified: strand-specific (default)


Processed 894442 lines in total
Total number of methylation call strings processed: 894442

Final Cytosine Methylation Report
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Total number of C's analysed:	13937503

Total methylated C's in CpG context:	513281
Total methylated C's in CHG context:	73657
Total methylated C's in CHH context:	135560

Total C to T conversions in CpG context:	1472280
Total C to T conversions in CHG context:	2796947
Total C to T conversions in CHH context:	8945778

C methylated in CpG context:	25.9%
C methylated in CHG context:	2.6%
C methylated in CHH context:	1.5%