Bowtie seems to be working fine (tested command '/gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/bowtie2 --version' [2.3.4])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.9/samtools'
Reference genome folder provided is /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/	(absolute path is '/gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/)'
Processing sequences up to read no. 500000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4

Input files to be analysed (in current folder '/gscratch/scrubbed/samwhite/outputs/20190224_pgenerosa_rrbs_se_bismark/subset_Pgenerosa_v070_500000'):
/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Current working directory is: /gscratch/scrubbed/samwhite/outputs/20190224_pgenerosa_rrbs_se_bismark/subset_Pgenerosa_v070_500000

Now reading in and storing sequence information of the genome specified in: /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/

Single-core mode: setting pid to 1

Single-end alignments will be performed
=======================================

Input file is in FastQ format
Processing reads up to sequence no. 500000 from /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz
Writing a C -> T converted version of the input file pgen_bsseq_all_R1.fastq.gz to pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file pgen_bsseq_all_R1.fastq.gz (500001 sequences in total)

Input file is pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq (FastQ)

Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/ with the specified options: -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals

Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq with options -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --norc)
Using Bowtie 2 index: /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/Bisulfite_Genome/CT_conversion/BS_CT

Found first alignment:	SL-HBW:624:CAAWVANXX:5:2301:1512:1956_1:N:0:ATCACG	4	*	0	0	*	*	0	0	NGTTTATATGTATGTATTATATTTGTGTAGGTATTGTATTTGATAAGGAT	#<<<BBFFFFFFFFFFFF/BFFFFFFBFBFFFFFFFFFFFF/<BBF<FBF	YT:Z:UU
Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq with options -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --nofw)
Using Bowtie 2 index: /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/Bisulfite_Genome/GA_conversion/BS_GA

Found first alignment:	SL-HBW:624:CAAWVANXX:5:2301:1512:1956_1:N:0:ATCACG	4	*	0	0	*	*	0	0	NGTTTATATGTATGTATTATATTTGTGTAGGTATTGTATTTGATAAGGAT	#<<<BBFFFFFFFFFFFF/BFFFFFFBFBFFFFFFFFFFFF/<BBF<FBF	YT:Z:UU

>>> Writing bisulfite mapping results to pgen_bsseq_all_R1_bismark_bt2.bam <<<


Reading in the sequence file /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6416:3671_1:N:0:ATCACG	PGA_scaffold65532__1_contigs__length_13710	13610
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3206:3918_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3973:3828_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4047:4144_1:N:0:ATCACG	PGA_scaffold45488__1_contigs__length_1333	1237
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9092:4062_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20681:4212_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19035:4315_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14831:4639_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1348:4824_1:N:0:ATCACG	PGA_scaffold805__1_contigs__length_19754	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7675:6371_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19232:6308_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10646:7090_1:N:0:ATCACG	PGA_scaffold42185__1_contigs__length_1105	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3873:7275_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6313:7965_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13845:8879_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15388:9040_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12292:9405_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11678:9524_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6448:9781_1:N:0:ATCACG	PGA_scaffold19151__1_contigs__length_2082	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15972:9803_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13692:10097_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3195:10952_1:N:0:ATCACG	PGA_scaffold58363__1_contigs__length_1412	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13122:11093_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3974:11478_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10980:11552_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11522:11632_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4623:12077_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6489:12163_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7474:12098_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3330:12497_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9575:12310_1:N:0:ATCACG	PGA_scaffold21709__1_contigs__length_3695	3594
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19857:13678_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16275:14515_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1085
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2129:15188_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7236:15233_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6904:15435_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20447:15349_1:N:0:ATCACG	PGA_scaffold9226__1_contigs__length_1034	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8365:15800_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12413:15822_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14907:16248_1:N:0:ATCACG	PGA_scaffold56753__1_contigs__length_3010	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15434:16045_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5458:17408_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1516:17681_1:N:0:ATCACG	PGA_scaffold30867__1_contigs__length_1516	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20239:17664_1:N:0:ATCACG	PGA_scaffold52208__1_contigs__length_6200	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6312:18088_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6219:18857_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12907:19243_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18316:19453_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5161:19644_1:N:0:ATCACG	PGA_scaffold71558__1_contigs__length_10954	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1407:20205_1:N:0:ATCACG	PGA_scaffold68393__1_contigs__length_1425	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9301:20416_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7001:20835_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5607:21220_1:N:0:ATCACG	PGA_scaffold68634__1_contigs__length_8528	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4699:21694_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8101:21533_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4658:22456_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1678:23029_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6493:23041_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10912:23740_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18939:23977_1:N:0:ATCACG	PGA_scaffold21709__1_contigs__length_3695	3594
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3544:24190_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16206:24362_1:N:0:ATCACG	PGA_scaffold63966__1_contigs__length_6244	6144
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1652:24932_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15667:24962_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20145:24945_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18062:25125_1:N:0:ATCACG	PGA_scaffold46179__1_contigs__length_1326	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10797:25376_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20748:25294_1:N:0:ATCACG	PGA_scaffold52448__1_contigs__length_6871	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14270:26632_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3323:26853_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8904:26863_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11864:26806_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16067:26968_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8655:27251_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3640:27718_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12987:27564_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18374:27963_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989292
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20578:28801_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10338:29902_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4053:30305_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	960
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13490:30813_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19571:31179_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13110:31372_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17216:31410_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3159:31974_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13729:32029_1:N:0:ATCACG	PGA_scaffold48161__1_contigs__length_1209	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5855:32292_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11207:32870_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989292
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8418:33090_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17204:33331_1:N:0:ATCATG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2511:34933_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989292
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10237:34966_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10665:34864_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8382:35065_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3135:35429_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13399:35332_1:N:0:ATCACG	PGA_scaffold7695__1_contigs__length_2232	2135
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17569:35412_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3882:36460_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5437:36841_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14829:36769_1:N:0:ATCACG	PGA_scaffold48911__1_contigs__length_1808	1707
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14324:37124_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2379:37279_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2101:37716_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19473:38568_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11838:38805_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1090
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6010:39641_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	959
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20666:39512_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	960
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15933:40607_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10610:41002_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14367:42405_1:N:0:ATCACG	PGA_scaffold64880__1_contigs__length_1934	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15508:43151_1:N:0:ATCACG	PGA_scaffold12776__1_contigs__length_1086	985
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1419:44486_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14785:44495_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989303
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4210:44750_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4479:45035_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5548:45348_1:N:0:ATCACG	PGA_scaffold33753__1_contigs__length_1972	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10147:45294_1:N:0:ATCACG	PGA_scaffold842__1_contigs__length_6824	6744
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4363:46076_1:N:0:ATCACG	PGA_scaffold55977__1_contigs__length_5671	5570
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9205:46157_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19901:46259_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4011:46712_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2340:46814_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6878:47214_1:N:0:ATCACG	PGA_scaffold19818__1_contigs__length_1159	1059
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16301:47371_1:N:0:ATCACG	PGA_scaffold32302__1_contigs__length_3672	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9295:47828_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16038:48486_1:N:0:ATCACG	PGA_scaffold17225__1_contigs__length_1255	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18012:48374_1:N:0:ATCACG	PGA_scaffold71790__1_contigs__length_1978	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:21106:48323_1:N:0:ATCACG	PGA_scaffold47144__1_contigs__length_1542	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1769:48854_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4514:48762_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8461:48977_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10948:48763_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10675:49425_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17173:49578_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17775:49727_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5574:50057_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8947:50053_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15246:50527_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6342:50954_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8987:51161_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19654:51988_1:N:0:ATCACG	PGA_scaffold72572__1_contigs__length_10914	10817
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10934:52441_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16721:52277_1:N:0:ATCACT	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17346:53044_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13220:53499_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1187:53981_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19065:54233_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16185:54363_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18596:54468_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3717:54626_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7978:54614_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8641:54982_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19470:54849_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9456:55056_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10813:55003_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6417:55494_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10032:55319_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12261:55276_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6847:56302_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9812:56342_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19559:56658_1:N:0:ATCACG	PGA_scaffold8319__1_contigs__length_3854	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19602:56762_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6952:57636_1:N:0:ATCACG	PGA_scaffold11868__1_contigs__length_1142	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5992:57751_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10743:57926_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13118:57835_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2690:58327_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5666:58378_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10483:58427_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5370:59324_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3269:59533_1:N:0:ATCACG	PGA_scaffold19606__1_contigs__length_3441	3345
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13174:60819_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9851:61078_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9629:61816_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14294:61835_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9714:63346_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6241:63694_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18114:63590_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12306:63985_1:N:0:ATCACG	PGA_scaffold27759__1_contigs__length_5219	5124
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2488:64192_1:N:0:ATCACG	PGA_scaffold56906__1_contigs__length_3060	2968
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2973:64989_1:N:0:ATCACG	PGA_scaffold66893__1_contigs__length_28199	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19152:65486_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11332:65598_1:N:0:ATCACG	PGA_scaffold202335__1_contigs__length_3095	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12856:65874_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14112:66096_1:N:0:ATCACG	PGA_scaffold47727__1_contigs__length_1041	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5589:66635_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	943
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6440:66584_1:N:0:ATCACG	PGA_scaffold27275__1_contigs__length_9839	9741
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13011:67059_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3255:67394_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2669:67636_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989301
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15044:68278_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17415:69517_1:N:0:ATCACG	PGA_scaffold67484__1_contigs__length_6392	6297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3849:70722_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4503:70682_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7209:70630_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9914:70581_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15388:70853_1:N:0:ATCACG	PGA_scaffold58948__1_contigs__length_1574	1478
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14160:72250_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6743:72740_1:N:0:ATCACG	PGA_scaffold67306__1_contigs__length_2413	2315
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6451:73560_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1085
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11477:75731_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12754:76238_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1849:76300_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10932:76444_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15584:76736_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15862:76682_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18492:76693_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18425:76752_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16077:77838_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10850:78038_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19574:78139_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12971:78271_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18563:78263_1:N:0:ATCACG	PGA_scaffold187550__1_contigs__length_2533	2437
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13183:79132_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17426:80074_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:12296:80293_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3943:81210_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11329:81268_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3328:81619_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16763:82202_1:N:0:ATCACG	PGA_scaffold237833__1_contigs__length_3372	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7413:82454_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2147:82634_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11051:82651_1:N:0:ATCACG	PGA_scaffold21709__1_contigs__length_3695	3594
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19147:82724_1:N:0:ATCACG	PGA_scaffold11795__1_contigs__length_2325	2232
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18190:82796_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18833:82848_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6181:83001_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6797:84952_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18503:84959_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17753:85175_1:N:0:ATCACG	PGA_scaffold8553__1_contigs__length_4059	3965
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13670:85398_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15488:85331_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19214:85733_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:9792:85978_1:N:0:ATCACG	PGA_scaffold38376__1_contigs__length_3809	3754
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18795:85865_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7155:86433_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4993:86839_1:N:0:ATCACG	PGA_scaffold261067__1_contigs__length_1024	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:1697:87724_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:16622:87956_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19347:88052_1:N:0:ATCACG	PGA_scaffold62054__1_contigs__length_8475	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:3205:88449_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10919:88251_1:N:0:ATCACG	PGA_scaffold54741__1_contigs__length_2470	2378
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20298:88315_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19213:88748_1:N:0:ATCACG	PGA_scaffold12925__1_contigs__length_7152	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:19409:90171_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8279:91282_1:N:0:ATCACG	PGA_scaffold35705__1_contigs__length_2009	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:8228:91687_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1095
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2309:92007_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:13225:92517_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989292
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18048:92893_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11318:94263_1:N:0:ATCACG	PGA_scaffold59300__1_contigs__length_6746	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4050:95179_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:5880:95163_1:N:0:ATCACG	PGA_scaffold45889__1_contigs__length_3836	3746
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7891:95704_1:N:0:ATCACG	PGA_scaffold48012__1_contigs__length_5328	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:14253:96218_1:N:0:ATCACG	PGA_scaffold67687__1_contigs__length_62665	62568
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:7419:96484_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20282:96632_1:N:0:ATCACG	PGA_scaffold19253__1_contigs__length_4396	4297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:4839:97193_1:N:0:ATCACG	PGA_scaffold67599__1_contigs__length_4449	4348
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:15355:97313_1:N:0:ATCACG	PGA_scaffold72235__1_contigs__length_2564	2473
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18984:98044_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17403:98516_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:11415:98763_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:17526:98984_1:N:0:ATCACG	PGA_scaffold48068__1_contigs__length_2993	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:6605:99276_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:10388:99574_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:2735:100165_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:20403:100066_1:N:0:ATCACG	PGA_scaffold3305__1_contigs__length_2675	2580
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2301:18971:100678_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12533:2329_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20944:2371_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20728:2783_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13583:3248_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16763:3030_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14963:3261_1:N:0:ATCACG	PGA_scaffold66880__1_contigs__length_6661	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6249:3692_1:N:0:ATCACG	PGA_scaffold32403__1_contigs__length_2511	2411
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12393:3616_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15641:3757_1:N:0:ATCACG	PGA_scaffold290947__1_contigs__length_6787	6688
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9687:4394_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11736:4971_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15760:4875_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12527:6947_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17169:7826_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20475:7941_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6944:8634_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989296
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16450:8703_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10878:9383_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3050:9710_1:N:0:ATCACG	PGA_scaffold1080__1_contigs__length_1005	920
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9069:9853_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4418:10218_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10887:10461_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15457:10337_1:N:0:ATCACG	PGA_scaffold37692__1_contigs__length_1628	1530
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5103:12122_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7229:12519_1:N:0:ATCACG	PGA_scaffold69209__1_contigs__length_1182	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14889:12571_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17085:14885_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989292
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20148:15215_1:N:0:ATCACG	PGA_scaffold50593__1_contigs__length_7492	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3803:15313_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19660:17932_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16862:18098_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9160:18281_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7912:18686_1:N:0:ATCACG	PGA_scaffold32434__1_contigs__length_2346	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19748:18521_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8083:19196_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13330:19002_1:N:0:ATTACG	PGA_scaffold19684__1_contigs__length_1235	1183
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15206:19303_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17613:20332_1:N:0:ATCACG	PGA_scaffold20510__1_contigs__length_12130	12030
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14301:21559_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14831:21621_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18076:22281_1:N:0:ATCACG	PGA_scaffold300696__1_contigs__length_1038	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8852:22850_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4753:23281_1:N:0:ATCACG	PGA_scaffold23152__1_contigs__length_2193	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13914:23914_1:N:0:ATCACG	PGA_scaffold25330__1_contigs__length_1946	1845
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17855:25749_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13443:26425_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9398:26583_1:N:0:ATCACG	PGA_scaffold3751__1_contigs__length_1278	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9644:27237_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4306:27375_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8000:27260_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15984:27617_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17256:27784_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8620:28439_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16200:28469_1:N:0:GTCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11189:29532_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12039:29739_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16323:29650_1:N:0:ATCACG	PGA_scaffold47855__1_contigs__length_1557	1456
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9961:29961_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10340:30890_1:N:0:ATCACG	PGA_scaffold47299__1_contigs__length_1293	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18290:31442_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11250:33086_1:N:0:ATCACG	PGA_scaffold22811__1_contigs__length_1003	902
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5900:33644_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5741:34736_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17563:34844_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3441:36096_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12993:36029_1:N:0:ATCACG	PGA_scaffold38677__1_contigs__length_6643	6557
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12877:36967_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2775:37779_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9482:38546_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989296
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1489:38974_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10663:39095_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17516:39056_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19718:39004_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1637:39439_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11999:39461_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2485:39776_1:N:0:ATCACG	PGA_scaffold40003__1_contigs__length_6240	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20412:39755_1:N:0:ATAACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20577:39939_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8868:40996_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13368:41203_1:N:0:ATCACG	PGA_scaffold14436__1_contigs__length_1387	1323
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1297:41769_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989301
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10442:41920_1:N:0:ATCACG	PGA_scaffold13283__1_contigs__length_1211	1111
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9423:42904_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14179:42955_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4526:44219_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8454:44239_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14761:44750_1:N:0:ATCACG	PGA_scaffold32403__1_contigs__length_2511	2411
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10416:45520_1:N:0:ATCACG	PGA_scaffold46678__1_contigs__length_2559	2462
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11186:46408_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18076:47434_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7122:47640_1:N:0:ATCACG	PGA_scaffold17490__1_contigs__length_1309	1211
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9567:47751_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9920:47990_1:N:0:ATCACG	PGA_scaffold57422__1_contigs__length_21905	21807
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9531:48233_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5938:48363_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2602:48508_1:N:0:ATCACG	PGA_scaffold42004__1_contigs__length_1281	1186
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9567:48655_1:N:0:ATCACG	PGA_scaffold21709__1_contigs__length_3695	3600
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7902:48872_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18840:48821_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11920:49488_1:N:0:ATCACG	PGA_scaffold72273__1_contigs__length_3285	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10231:49684_1:N:0:ATCACG	PGA_scaffold35239__1_contigs__length_5873	5773
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11509:50250_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10615:50707_1:N:0:ATCACG	PGA_scaffold1008__1_contigs__length_1093	995
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10716:52208_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2444:52294_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8245:52307_1:N:0:ATCACG	PGA_scaffold50859__1_contigs__length_2931	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19320:52609_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4738:54380_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7096:54610_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9564:54836_1:N:0:ATCACG	PGA_scaffold54226__1_contigs__length_2778	2681
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16766:55653_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8286:55759_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13210:56327_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6317:56913_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10529:57815_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6696:58168_1:N:0:ATCACG	PGA_scaffold63075__1_contigs__length_16706	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17690:58193_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1514:58324_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7486:58430_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17683:58436_1:N:0:ATCACG	PGA_scaffold66868__1_contigs__length_2274	2173
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17107:59023_1:N:0:ATCACG	PGA_scaffold51652__1_contigs__length_2628	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12638:59285_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1430:59681_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6102:59941_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10427:59838_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10914:60508_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17190:60681_1:N:0:ATCACG	PGA_scaffold10807__1_contigs__length_8377	8287
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7308:60956_1:N:0:ATCACG	PGA_scaffold50673__1_contigs__length_1711	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16611:61316_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14737:62098_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	956
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16560:62190_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2516:62377_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	944
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3281:62272_1:N:0:ATCACG	PGA_scaffold35705__1_contigs__length_2009	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4838:62870_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10434:63284_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19371:63360_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16816:63550_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20046:63600_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989299
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14593:64309_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7196:64943_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6302:65236_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	956
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11964:65208_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15520:65730_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19300:65698_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4238:66121_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1095
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10079:68214_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7010:68359_1:N:0:ATCACG	PGA_scaffold59285__1_contigs__length_4660	4610
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8626:69427_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9428:69371_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18899:69268_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8116:69592_1:N:0:ATCACG	PGA_scaffold48962__1_contigs__length_1318	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11701:69788_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3358:70212_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20275:70454_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8699:70584_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18783:71877_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4221:72577_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11533:72660_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13743:72629_1:N:0:ATCACG	PGA_scaffold23848__1_contigs__length_2302	2206
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5069:72866_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6071:73121_1:N:0:ATCACG	PGA_scaffold25202__1_contigs__length_1156	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12584:73901_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989293
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19976:73781_1:N:0:ATCACG	PGA_scaffold2009__1_contigs__length_1083	980
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15093:74252_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10820:74680_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9850:75547_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14580:75541_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10180:76888_1:N:0:ATCACG	PGA_scaffold48260__1_contigs__length_1362	1266
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12994:77042_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12019:77457_1:N:0:ATCACG	PGA_scaffold55667__1_contigs__length_1987	1888
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19060:77670_1:N:0:ATCACG	PGA_scaffold14169__1_contigs__length_2624	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3229:77771_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989300
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13218:78833_1:N:0:ATCACG	PGA_scaffold25734__1_contigs__length_1430	1329
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19037:79062_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989301
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15066:79801_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19584:79910_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19306:80020_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6977:80902_1:N:0:ATCACG	PGA_scaffold42006__1_contigs__length_1695	1599
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4191:81135_1:N:0:ATCACG	PGA_scaffold51146__1_contigs__length_1541	1441
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9978:81185_1:N:0:ATCACG	PGA_scaffold70909__1_contigs__length_2936	2851
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:17861:81472_1:N:0:ATCACG	PGA_scaffold69147__1_contigs__length_5733	5632
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15921:82905_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15560:83197_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5158:83653_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989302
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3872:83869_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8853:84087_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4160:84992_1:N:0:ATCACG	PGA_scaffold21709__1_contigs__length_3695	3599
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15846:85198_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:11982:85464_1:N:0:ATCACG	PGA_scaffold70324__1_contigs__length_1452	1360
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15157:85281_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:15514:85519_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18061:85535_1:N:0:ATCACG	PGA_scaffold27563__1_contigs__length_1320	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1131:86144_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19828:86078_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:6470:86333_1:N:0:ATCACG	PGA_scaffold56574__1_contigs__length_17329	17233
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13491:87462_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2451:88259_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5354:89183_1:N:0:ATCACG	PGA_scaffold3751__1_contigs__length_1278	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10168:89147_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14082:89116_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14505:89702_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989301
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9827:89829_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16066:90059_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12939:90343_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7468:90908_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:14679:91235_1:N:0:ATCACG	PGA_scaffold8189__1_contigs__length_1080	979
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16563:91034_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12357:91384_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989301
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:3142:91933_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:10027:91983_1:N:0:ATCACG	PGA_scaffold287734__1_contigs__length_1770	1670
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9093:92249_1:N:0:ATCACG	PGA_scaffold55999__1_contigs__length_2764	2667
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:18364:93308_1:N:0:ATCACG	PGA_scaffold35187__1_contigs__length_3059	2959
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19407:93355_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:12016:93834_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:19070:94152_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20041:94424_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	943
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:13703:94727_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:7251:94823_1:N:0:ATCACG	PGA_scaffold17963__1_contigs__length_2299	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9551:94908_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:4002:95489_1:N:0:ATCACG	PGA_scaffold32285__1_contigs__length_1832	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5699:95324_1:N:0:ATCACG	PGA_scaffold270110__1_contigs__length_1076	975
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:8315:95341_1:N:0:ATCACG	PGA_scaffold49882__1_contigs__length_1026	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:16984:95790_1:N:0:ATCACG	PGA_scaffold36156__1_contigs__length_3020	2920
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:2151:96846_1:N:0:ATCACG	PGA_scaffold44297__1_contigs__length_8044	7945
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:5215:96874_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:1828:97656_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:20988:98741_1:N:0:ATCACG	PGA_scaffold1602__1_contigs__length_1072	975
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2304:9298:99390_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:15602:3205_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17998:5423_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5442:5747_1:N:0:ATCACG	PGA_scaffold47876__1_contigs__length_1242	1141
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7851:7728_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:9156:8884_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:19947:8931_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17477:9074_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5068:9389_1:N:0:ATCACG	PGA_scaffold298__1_contigs__length_47389	47298
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13274:9478_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13086:9804_1:N:0:ATCACG	PGA_scaffold60774__1_contigs__length_1105	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:20229:10178_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1087
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:6831:10632_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:14634:10600_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:12586:12370_1:N:0:ATCACG	PGA_scaffold53526__1_contigs__length_7661	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16334:13051_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:19667:14016_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:20017:14441_1:N:0:ATCACG	PGA_scaffold59244__1_contigs__length_6079	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:10225:15200_1:N:0:ATCACG	PGA_scaffold312267__1_contigs__length_6211	6111
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13612:16079_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17596:16141_1:N:0:ATCACG	PGA_scaffold33929__1_contigs__length_3544	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:8741:16496_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:12852:16739_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7299:17416_1:N:0:ATCACG	PGA_scaffold47339__1_contigs__length_2286	2187
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:1475:19926_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:3113:19774_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:18725:20173_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:18294:20398_1:N:0:ATCACG	PGA_scaffold63257__1_contigs__length_1801	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:8748:21667_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7519:21858_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17643:21811_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5437:22641_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:3024:22818_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7152:22777_1:N:0:ATCACG	PGA_scaffold62618__1_contigs__length_2536	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5311:23245_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5828:23397_1:N:0:ATCACG	PGA_scaffold59596__1_contigs__length_1405	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:10435:23720_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:18350:23727_1:N:0:ATAACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7977:23825_1:N:0:ATCACG	PGA_scaffold1602__1_contigs__length_1072	974
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:15154:24414_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:15492:24256_1:N:0:ATCACG	PGA_scaffold9825__1_contigs__length_7891	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:2100:24699_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:2809:24512_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:9743:24693_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989297
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:10140:24918_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13246:24784_1:N:0:ATCACG	PGA_scaffold48498__1_contigs__length_32874	32782
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:9583:25063_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:19594:25737_1:N:0:ATCACG	PGA_scaffold3093__1_contigs__length_1329	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:8549:25969_1:N:0:ATCACG	PGA_scaffold18559__1_contigs__length_1280	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:8422:26367_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:1335:26612_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17453:26556_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:12785:27035_1:N:0:ATCACG	PGA_scaffold34601__1_contigs__length_1043	946
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16200:27836_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:6395:28992_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5225:29968_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13051:29928_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13907:30027_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:19942:30874_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:2916:31521_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:1717:32098_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:4856:32045_1:N:0:ATCACG	PGA_scaffold64138__1_contigs__length_1258	1157
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:13630:32561_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:11673:32801_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:5874:33157_1:N:0:ATCACG	PGA_scaffold66162__1_contigs__length_25196	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:6063:33089_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17937:33444_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:9038:33925_1:N:0:ATCACG	PGA_scaffold65517__1_contigs__length_15888	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:8602:35134_1:N:0:ATCACG	PGA_scaffold37520__1_contigs__length_1228	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7852:36254_1:N:0:ATCACG	PGA_scaffold70512__1_contigs__length_8479	8386
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16306:36441_1:N:0:ATCACG	PGA_scaffold68460__1_contigs__length_7254	1
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16299:36791_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798926
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:20536:36823_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:4154:37211_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798927
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:12285:37392_1:N:0:ATCACG	PGA_scaffold35705__1_contigs__length_2009	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:6753:37707_1:N:0:ATCACG	PGA_scaffold20616__1_contigs__length_1183	1088
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17018:37634_1:N:0:ATCACG	PGA_scaffold39872__1_contigs__length_1171	1073
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17917:37522_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798929
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16165:38495_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:4418:38517_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798928
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:9878:39049_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:11681:39123_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989294
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:7912:39714_1:N:0:ATCACG	PGA_scaffold323__1_contigs__length_1799026	1798925
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:17147:39572_1:N:0:ATCACG	PGA_scaffold32302__1_contigs__length_3672	2
Chromosomal sequence could not be extracted for	SL-HBW:624:CAAWVANXX:5:2306:16435:40155_1:N:0:ATCACG	PGA_scaffold718__1_contigs__length_989392	989295
500000 reads; of these:
  500000 (100.00%) were unpaired; of these:
    197991 (39.60%) aligned 0 times
    106575 (21.32%) aligned exactly 1 time
    195434 (39.09%) aligned >1 times
60.40% overall alignment rate
500000 reads; of these:
  500000 (100.00%) were unpaired; of these:
    196615 (39.32%) aligned 0 times
    107703 (21.54%) aligned exactly 1 time
    195682 (39.14%) aligned >1 times
60.68% overall alignment rate

Successfully deleted the temporary file pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq

Final Alignment report
======================
Sequences analysed in total:	500000
Number of alignments with a unique best hit from the different alignments:	280278
Mapping efficiency:	56.1%

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	4524107

Total methylated C's in CpG context:	145463
Total methylated C's in CHG context:	23550
Total methylated C's in CHH context:	41977
Total methylated C's in Unknown context:	887

Total unmethylated C's in CpG context:	524273
Total unmethylated C's in CHG context:	934834
Total unmethylated C's in CHH context:	2854010
Total unmethylated C's in Unknown context:	10126

C methylated in CpG context:	21.7%
C methylated in CHG context:	2.5%
C methylated in CHH context:	1.4%
C methylated in Unknown context (CN or CHN):	8.1%


Bismark completed in 0d 0h 4m 19s

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Bismark run complete
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