/gannet/Atumefaciens/20190224_pgenerosa_rrbs_se_bismark This is a quick and dirty (i.e. no adaptor/quality trimming) assessment of all of our Panopea generosa bisulfite sequencing efforts to date in order to get a rough idea of methylation mapping using Bismark. Run on Mox. --- FILES - 20190224_pgenerosa_rrbs_se_bismark.sh: SBATCH job script. - pgen_bsseq_all_R1.list: List of all R! FastQ input files used. - slurm-647215.out: SLURM output (i.e. stderr/stdout). - subset_Pgenerosa_v070_*: Directcory containing Bismark outputs from subset of specified number of reads of v070 genome. - subset_Pgenerosa_v071_*: Directcory containing Bismark outputs from subset of specified number of reads of v071 genome. - subset_Pgenerosa_v073_*: Directcory containing Bismark outputs from subset of specified number of reads of v073 genome. - system_path.log: Contents of Sam's system $PATH on Mox. --- Notebook: https://robertslab.github.io/sams-notebook/2019/02/22/Methylation-Analysis-P.generosa-Bismark-on-Mox.html