Bowtie seems to be working fine (tested command '/gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/bowtie2 --version' [2.3.4])
Output format is BAM (default)
Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.9/samtools'
Reference genome folder provided is /gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/	(absolute path is '/gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/)'
Processing sequences up to read no. 2000000 from the input file
Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4

Input files to be analysed (in current folder '/gscratch/scrubbed/samwhite/outputs/20190224_olurida_se_bismark/subset_2000000'):
/gscratch/scrubbed/samwhite/data/O_lurida/BSseq/olur_bsseq_all_R1.fastq.gz
Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!)
Setting parallelization to single-threaded (default)

Current working directory is: /gscratch/scrubbed/samwhite/outputs/20190224_olurida_se_bismark/subset_2000000

Now reading in and storing sequence information of the genome specified in: /gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/

Single-core mode: setting pid to 1

Single-end alignments will be performed
=======================================

Input file is in FastQ format
Processing reads up to sequence no. 2000000 from /gscratch/scrubbed/samwhite/data/O_lurida/BSseq/olur_bsseq_all_R1.fastq.gz
Writing a C -> T converted version of the input file olur_bsseq_all_R1.fastq.gz to olur_bsseq_all_R1.fastq.gz_C_to_T.fastq

Created C -> T converted version of the FastQ file olur_bsseq_all_R1.fastq.gz (2000001 sequences in total)

Input file is olur_bsseq_all_R1.fastq.gz_C_to_T.fastq (FastQ)

Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/ with the specified options: -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals

Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from olur_bsseq_all_R1.fastq.gz_C_to_T.fastq with options -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --norc)
Using Bowtie 2 index: /gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/Bisulfite_Genome/CT_conversion/BS_CT

Found first alignment:	HWI-D00743:54:C8MOMACXX:1:1101:1413:2213_1:N:0:GGCTAC	0	Contig68945_CT_converted	3260	40	51M	*	0	0	AGATGGATTTTTTTTGGAATAAATTTGATTGTTATTGTTTTTGATATTTTA	CCCFFFFFHHHHHJJHJIIJIIIJJJJIJJJJJGIJIIIIJJIGIGIJJJI	AS:i:-6	XN:i:0	XM:i:1	XO:i:0	XG:i:0	NM:i:1	MD:Z:15A35	YT:Z:UU
Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from olur_bsseq_all_R1.fastq.gz_C_to_T.fastq with options -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --nofw)
Using Bowtie 2 index: /gscratch/srlab/sam/data/O_lurida/genomes/Olurida_v081/oly_v081_bismark_genome/Bisulfite_Genome/GA_conversion/BS_GA

Found first alignment:	HWI-D00743:54:C8MOMACXX:1:1101:1413:2213_1:N:0:GGCTAC	4	*	0	0	*	*	0	0	AGATGGATTTTTTTTGGAATAAATTTGATTGTTATTGTTTTTGATATTTTA	CCCFFFFFHHHHHJJHJIIJIIIJJJJIJJJJJGIJIIIIJJIGIGIJJJI	YT:Z:UU

>>> Writing bisulfite mapping results to olur_bsseq_all_R1_bismark_bt2.bam <<<


Reading in the sequence file /gscratch/scrubbed/samwhite/data/O_lurida/BSseq/olur_bsseq_all_R1.fastq.gz
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:4347:2281_1:N:0:GGCTAC	Contig150331	1132
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:5376:3134_1:N:0:GGCTAC	Contig91563	4015
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:17166:4061_1:N:0:GGCTAC	Contig137622	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:5908:8127_1:N:0:GGCTAC	Contig62700	12542
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:15584:10948_1:N:0:GGCTAC	Contig136606	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:20895:11557_1:N:0:GGCTAC	Contig61059	13263
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:16834:12905_1:N:0:GGCTAC	Contig103061	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:13764:15530_1:N:0:GGCTAC	Contig58471	12756
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:5252:17437_1:N:0:GGCTAC	Contig64696	1930
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:4688:18123_1:N:0:GGCTAC	Contig58295	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:9031:21273_1:N:0:GGCTAC	Contig81887	7685
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:11541:23175_1:N:0:GGCTAC	Contig31194	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:4494:28672_1:N:0:GGCTAC	Contig86549	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:1455:32979_1:N:0:GGCTAC	Contig89321	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:13971:35149_1:N:0:GGCTAC	Contig8342	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:20218:35803_1:N:0:GGCTAC	Contig4243	4822
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:8283:36165_1:N:0:GGCTAC	Contig91786	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:19453:43618_1:N:0:GGCTAC	Contig73061	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:3706:48640_1:N:0:GGCTAC	Contig61175	21107
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:11593:48655_1:N:0:GGCTAC	Contig7889	4048
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:2939:50408_1:N:0:GGCTAC	Contig85771	3766
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:6515:51728_1:N:0:GGCTAC	Contig170236	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:18033:53654_1:N:0:GGCTAC	Contig155853	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:4646:54966_1:N:0:GGCTAC	Contig95638	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:4910:55470_1:N:0:GGCTAC	Contig273050	2048
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:18569:55548_1:N:0:GGCTAC	Contig151615	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:1532:60430_1:N:0:GGCTAC	Contig198517	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:3845:61407_1:N:0:GGCTAC	Contig140986	5961
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:18023:64092_1:N:0:GGCTAC	Contig136884	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:17964:68817_1:N:0:GGCTAC	Contig147984	3646
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:7470:74674_1:N:0:GGCTAC	Contig73164	4170
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:13391:83918_1:N:0:GGCTAC	Contig50092	14727
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:12498:85448_1:N:0:GGCTAC	Contig77238	1311
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1101:8953:94533_1:N:0:GGCTAC	Contig68181	2475
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:15772:4429_1:N:0:GGCTAC	Contig97752	7990
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:3321:4677_1:N:0:GGCTAC	Contig114458	2272
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:6273:7840_1:N:0:GGCTAC	Contig123727	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:21017:7890_1:N:0:GGCTAC	Contig33816	21218
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:5176:8223_1:N:0:GGCTAC	Contig556401	1014
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:12079:12646_1:N:0:GGCTAC	Contig77554	4667
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:17607:14045_1:N:0:GGCTAC	Contig81818	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:1819:17979_1:N:0:GGCTAC	Contig114505	4631
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:5847:20131_1:N:0:GGCTAC	Contig149964	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:12424:23388_1:N:0:GGCTAC	Contig46164	2603
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:5841:25217_1:N:0:GGCTAC	Contig127394	5030
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:2570:25922_1:N:0:GGCTAC	Contig24992	2193
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:3167:35049_1:N:0:GGCTAC	Contig111992	1806
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:2648:36615_1:N:0:GGCTAC	Contig121514	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:8099:37675_1:N:0:GGCTAC	Contig194027	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:6216:38455_1:N:0:GGCTAC	Contig107186	1310
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:19081:38525_1:N:0:GGCTAC	Contig134324	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:18954:38781_1:N:0:GGCTAC	Contig109433	4007
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:13755:39923_1:N:0:GGCTAC	Contig68297	3711
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:8788:41696_1:N:0:GGCTAC	Contig62739	10345
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:11430:44806_1:N:0:GGCTAC	Contig8535	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:14607:45785_1:N:0:GGCTAC	Contig126469	3513
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:6724:48048_1:N:0:GGCTAC	Contig127062	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:14390:52873_1:N:0:GGCTAC	Contig650	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:9078:53112_1:N:0:GGCTAC	Contig46651	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:11107:53125_1:N:0:GGCTAC	Contig198911	1122
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:16570:53767_1:N:0:GGCTAC	Contig64786	25154
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:20708:54777_1:N:0:GGCTAC	Contig101805	1365
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:5643:55915_1:N:0:GGCTAC	Contig96536	3416
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:3997:61528_1:N:0:GGCTAC	Contig91261	7142
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:6382:62705_1:N:0:GGCTAC	Contig74658	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:13854:66869_1:N:0:GGCTAC	Contig211510	1143
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:2343:72750_1:N:0:GGCTAC	Contig16586	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:10448:73575_1:N:0:GGCTAC	Contig1091	23957
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:6298:74422_1:N:0:GGCTAC	Contig137459	985
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:9736:79930_1:N:0:GGCTAC	Contig65230	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:15928:80672_1:N:0:GGCTAC	Contig1994	17848
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:20752:85792_1:N:0:GGCTAC	Contig418836	1074
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:10938:86965_1:N:0:GGCTAC	Contig128222	1197
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:10527:87362_1:N:0:GGCTAC	Contig23361	1427
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:18067:94594_1:N:0:GGCTAC	Contig120994	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:2470:95310_1:N:0:GGCTAC	Contig88172	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:5618:95600_1:N:0:GGCTAC	Contig189411	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:10794:100257_1:N:0:GGCTAC	Contig206446	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1102:15573:101022_1:N:0:GGCTAC	Contig345869	1166
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:6036:5254_1:N:0:GGCTAC	Contig193606	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:15817:6057_1:N:0:GGCTAC	Contig30194	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:12364:9882_1:N:0:GGCTAC	Contig98011	3408
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:1678:18353_1:N:0:GGCTAC	Contig65230	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:17282:22648_1:N:0:GGCTAC	Contig8057	8167
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:19746:22654_1:N:0:GGCTAC	Contig111317	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:17334:23314_1:N:0:GGCTAC	Contig7028	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:4673:25988_1:N:0:GGCTAC	Contig213444	4112
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:18367:26160_1:N:0:GGCTAC	Contig110263	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:19007:27419_1:N:0:GGCTAC	Contig90762	3368
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:12801:30895_1:N:0:GGCTAC	Contig16235	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:5112:35398_1:N:0:GGCTAC	Contig85061	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:5890:36562_1:N:0:GGCTAC	Contig67597	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:4934:37574_1:N:0:GGCTAC	Contig95763	1374
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:14929:42044_1:N:0:GGCTAC	Contig7930	3379
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:13418:42617_1:N:0:GGCTAC	Contig49094	2904
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:15033:43782_1:N:0:GGCTAC	Contig32939	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:15778:43874_1:N:0:GGCTAC	Contig97652	5228
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:15760:46002_1:N:0:GGCTAC	Contig204217	7743
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:18210:53520_1:N:0:GGCTAC	Contig36106	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:11654:56663_1:N:0:GGCTAC	Contig93947	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:1338:57142_1:N:0:GGCTAC	Contig67	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:10331:57742_1:N:0:GGCTAC	Contig64786	25155
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:17827:58655_1:N:0:GGCTAC	Contig72382	12231
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:11735:62087_1:N:0:GGCTAC	Contig39678	4941
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:13004:65617_1:N:0:GGCTAC	Contig62375	9700
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:9833:65975_1:N:0:GGCTAC	Contig103734	1366
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:14848:67897_1:N:0:GGCTAC	Contig36582	4635
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:12965:70136_1:N:0:GGCTAC	Contig157976	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:4308:73258_1:N:0:GGCTAC	Contig50564	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:8499:74655_1:N:0:GGCTAC	Contig413	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:16836:75844_1:N:0:GGCTAC	Contig86765	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:18623:76961_1:N:0:GGCTAC	Contig213835	1407
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:16022:77894_1:N:0:GGCTAC	Contig66428	6742
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:10286:78382_1:N:0:GGCTAC	Contig2813	17268
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:16386:79815_1:N:0:GGCTAC	Contig38293	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:15793:82499_1:N:0:GGCTAC	Contig32939	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:6237:83094_1:N:0:GGCTAC	Contig75451	2622
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:8553:84252_1:N:0:GGCTAC	Contig38333	26945
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:16694:86692_1:N:0:GGCTAC	Contig147984	3647
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:21154:87123_1:N:0:GGCTAC	Contig128854	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:2395:88314_1:N:0:GGCTAC	Contig83012	3554
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:5759:90844_1:N:0:GGCTAC	Contig51466	10978
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:9745:91779_1:N:0:GGCTAC	Contig118742	3820
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:17758:92828_1:N:0:GGCTAC	Contig70667	3887
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:14299:93925_1:N:0:GGCTAC	Contig57650	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:4189:95750_1:N:0:GGCTAC	Contig9137	6876
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1103:12447:100451_1:N:0:GGCTAC	Contig208557	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:19544:4462_1:N:0:GGCTAC	Contig179264	3782
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:17823:5999_1:N:0:GGCTAC	Contig151615	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:1699:7087_1:N:0:GGCTAC	Contig93675	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:14987:7899_1:N:0:GGCTAC	Contig41004	31798
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:2483:10322_1:N:0:GGCTAC	Contig148895	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:2901:16538_1:N:0:GGCTAC	Contig171315	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:14181:16977_1:N:0:GGCTAC	Contig16086	20557
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:8919:17339_1:N:0:GGCTAC	Contig102373	1663
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:2941:17665_1:N:0:GGCTAC	Contig127398	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:16281:18385_1:N:0:GGCTAC	Contig290	36246
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:4149:19352_1:N:0:GGCTAC	Contig84697	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:14371:25216_1:N:0:GGCTAC	Contig17041	8271
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:15579:26480_1:N:0:GGCTAC	Contig1349	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:17031:29505_1:N:0:GGCTAC	Contig110389	1664
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:17720:29948_1:N:0:GGCTAC	Contig206614	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:11833:30884_1:N:0:GGCTAC	Contig52426	7827
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:10923:34077_1:N:0:GGCTAC	Contig59187	1690
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:8581:39185_1:N:0:GGCTAC	Contig90228	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:6831:39343_1:N:0:GGCTAC	Contig166943	2342
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:9360:41827_1:N:0:GGCTAC	Contig24480	2499
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:18914:42070_1:N:0:GGCTAC	Contig107422	1855
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:18333:43149_1:N:0:GGCTAC	Contig205100	10565
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:13885:58267_1:N:0:GGCTAC	Contig196877	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:9090:69308_1:N:0:GGCTAC	Contig31255	10100
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:12952:70101_1:N:0:GGCTAC	Contig131711	9645
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:8168:72224_1:N:0:GGCTAC	Contig118248	7930
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:7754:72865_1:N:0:GGCTAC	Contig33842	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:12673:73821_1:N:0:GGCTAC	Contig6585	5507
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:19238:75099_1:N:0:GGCTAC	Contig131517	3002
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:19604:79031_1:N:0:GGCTAC	Contig89262	1263
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:17542:80478_1:N:0:GGCTAC	Contig6714	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:2563:81240_1:N:0:GGCTAC	Contig48296	10890
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:4160:88033_1:N:0:GGCTAC	Contig20637	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:6657:88109_1:N:0:GGCTAC	Contig95655	2322
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:18923:89867_1:N:0:GGCTAC	Contig86018	9276
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:14698:92671_1:N:0:GGCTAC	Contig23469	11586
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:7283:93433_1:N:0:GGCTAC	Contig133242	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:13707:93649_1:N:0:GGCTAC	Contig45942	12254
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:9414:94760_1:N:0:GGCTAC	Contig57641	5469
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1104:15313:98529_1:N:0:GGCTAC	Contig188808	1269
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:1348:2547_1:N:0:GGCTAC	Contig9137	6876
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:2877:2590_1:N:0:GGCTAC	Contig39302	12483
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:10137:4390_1:N:0:GGCTAC	Contig57162	11486
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:6676:4738_1:N:0:GGCTAC	Contig157738	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:17436:6235_1:N:0:GGCTAC	Contig41280	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:12454:7373_1:N:0:GGCTAC	Contig207431	1743
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:18377:10351_1:N:0:GGCTAC	Contig109879	2095
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:7533:11575_1:N:0:GGCTAC	Contig73872	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:20490:13736_1:N:0:GGCTAC	Contig28227	54605
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:18759:16576_1:N:0:GGCTAC	Contig8057	8167
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:1652:21903_1:N:0:GGCTAC	Contig112610	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:15386:25680_1:N:0:GGCTAC	Contig65111	12336
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:2697:27461_1:N:0:GGCTAC	Contig4832	2969
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:4285:27719_1:N:0:GGCTAC	Contig117132	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:5911:27817_1:N:0:GGCTAC	Contig23140	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:13013:28459_1:N:0:GGCTAC	Contig84887	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:19702:30587_1:N:0:GGCTAC	Contig148373	6480
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:5977:31466_1:N:0:GGCTAC	Contig126469	3513
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:8218:35433_1:N:0:GGCTAC	Contig100414	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:16055:36626_1:N:0:GGCTAC	Contig93047	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:8325:43624_1:N:0:GGCTAC	Contig35960	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:14875:44375_1:N:0:GGCTAC	Contig173239	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:8631:45772_1:N:0:AGCTAC	Contig128293	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:17139:47046_1:N:0:GGCTAC	Contig199767	7404
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:9669:52618_1:N:0:GGCTAT	Contig32939	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:19149:61639_1:N:0:GGCTAC	Contig123907	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:1575:62781_1:N:0:GGCTAC	Contig63594	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:5292:65122_1:N:0:GGCTAC	Contig203883	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:1837:65724_1:N:0:GGCTAC	Contig41141	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:11776:72310_1:N:0:GGCTAC	Contig61683	2980
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:20053:73877_1:N:0:GGCTAC	Contig137678	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:8866:75850_1:N:0:GGCTAC	Contig119262	5588
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:3263:78249_1:N:0:GGCTAC	Contig36147	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:6526:78009_1:N:0:GGCTAC	Contig42324	21142
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:16175:83763_1:N:0:GGCTAC	Contig61983	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:16894:86290_1:N:0:GGCTAC	Contig104651	1095
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:5184:88127_1:N:0:GGCTAC	Contig180633	1251
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:17837:95727_1:N:0:GGCTAC	Contig2617	12614
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1105:13731:97021_1:N:0:GGCTAC	Contig156590	11001
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:10921:2649_1:N:0:GGCTAC	Contig48246	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:18224:3250_1:N:0:GGCTAC	Contig37273	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:14330:3632_1:N:0:GGCTAC	Contig47473	6623
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:18964:4779_1:N:0:GGCTAC	Contig130046	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:8680:11493_1:N:0:GGCTAC	Contig91741	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:5619:12648_1:N:0:GGCTAC	Contig81827	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:13811:13704_1:N:0:GGCTAC	Contig3092	10073
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:8369:14428_1:N:0:GGCTAC	Contig209860	949
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:1130:19669_1:N:0:GGCTAC	Contig90470	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:18599:21311_1:N:0:GGCTAC	Contig173764	4968
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:8578:33017_1:N:0:GGCTAC	Contig25359	19525
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:7330:33419_1:N:0:GGCTAC	Contig137767	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:8540:34936_1:N:0:GGCTAC	Contig196303	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:18524:35206_1:N:0:GGCTAC	Contig207472	4279
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:14923:42113_1:N:0:GGCTAC	Contig41227	4546
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:3582:42554_1:N:0:GGCTAC	Contig49624	20987
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:5322:43011_1:N:0:GGCTAC	Contig66921	11546
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:13409:43082_1:N:0:GGCTAC	Contig8416	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:4722:47517_1:N:0:GGCTAC	Contig123599	6157
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:19981:48597_1:N:0:GGCTAC	Contig2617	12613
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:1931:53023_1:N:0:GGCTAC	Contig90228	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:8727:53936_1:N:0:GGCTAC	Contig145722	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:9537:53840_1:N:0:GGCTAC	Contig55969	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:17791:55833_1:N:0:GGCTAC	Contig92778	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:3284:56798_1:N:0:GGCTAC	Contig6691	13041
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:4904:59525_1:N:0:GGCTAC	Contig72295	29909
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:17227:59693_1:N:0:GGCTAC	Contig115781	1505
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:12689:64107_1:N:0:GGCTAC	Contig66462	6789
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:17437:64558_1:N:0:GGCTAC	Contig90228	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:12915:64753_1:N:0:GGCTAC	Contig136606	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:11426:68071_1:N:0:GGCTAC	Contig62710	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:7433:68810_1:N:0:GGCTAC	Contig26352	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:19813:69339_1:N:0:GGCTAC	Contig96879	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:7152:72964_1:N:0:GGCTAC	Contig39341	11943
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:12016:74342_1:N:0:GGCTAC	Contig9137	6876
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:11813:74949_1:N:0:GGCTAC	Contig173159	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:14493:79407_1:N:0:GGCTAC	Contig139148	1485
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:13070:81936_1:N:0:GGCTAC	Contig33284	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:11649:82799_1:N:0:GGCTAC	Contig630886	7074
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:11054:83189_1:N:0:GGCTAC	Contig47556	26304
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:5816:87480_1:N:0:GGCTAC	Contig27574	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:4491:87616_1:N:0:GGCTAC	Contig119316	1675
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:17900:90589_1:N:0:GGCTAC	Contig29753	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:10707:94027_1:N:0:GGCTAC	Contig8663	2292
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:12920:94811_1:N:0:GGCTAC	Contig148105	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:7418:95221_1:N:0:GGCTAC	Contig47095	6077
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1106:19235:97716_1:N:0:GGCTAC	Contig99098	5091
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:9365:5222_1:N:0:GGCTAC	Contig62712	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:7812:8852_1:N:0:GGCTAC	Contig71648	2039
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:5840:10206_1:N:0:GGCTAC	Contig133125	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:10271:10263_1:N:0:GGCTAC	Contig66804	18354
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18622:16775_1:N:0:GGCTAC	Contig196877	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:14831:17144_1:N:0:GGCTAC	Contig98561	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2018:19274_1:N:0:GGCTAC	Contig89993	3781
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:4937:19480_1:N:0:GGCTAC	Contig142059	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:8589:20190_1:N:0:GGCTAC	Contig99068	2734
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:1995:20401_1:N:0:GGCTAC	Contig62092	7186
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2547:22528_1:N:0:GGCTAC	Contig148416	2204
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:5644:25669_1:N:0:GGCTAC	Contig1281	24130
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:4137:25754_1:N:0:GGCTAC	Contig189032	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:19566:28987_1:N:0:GGCTAC	Contig5365	3509
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:11623:31948_1:N:0:GGCTAC	Contig43261	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:7057:33473_1:N:0:GGCTAC	Contig89854	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:1816:33762_1:N:0:GGCTAC	Contig68105	5326
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:11387:33891_1:N:0:GGCTAC	Contig158187	2533
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:19667:34880_1:N:0:GGCTAC	Contig144013	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:20941:37871_1:N:0:GGCTAC	Contig110429	2068
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:15916:38312_1:N:0:GGCTAC	Contig98989	2027
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:19972:40264_1:N:0:GGCTAC	Contig56583	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:21125:44607_1:N:0:GGCTAC	Contig8416	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:9958:45553_1:N:0:GGCTAC	Contig23033	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:3208:51624_1:N:0:GGCTAC	Contig55427	2843
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:3427:51706_1:N:0:GGCTAC	Contig108457	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:11751:52444_1:N:0:GGCTAC	Contig110007	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2908:53027_1:N:0:GGCTAC	Contig82469	1411
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:13115:56749_1:N:0:GGCTAC	Contig64125	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:7695:56855_1:N:0:GGCTAC	Contig142286	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:13133:56753_1:N:0:GGCTAC	Contig64125	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:15297:57680_1:N:0:GGCTAC	Contig78973	4002
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18146:58921_1:N:0:GGCTAC	Contig88136	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:7536:61910_1:N:0:GGCTAC	Contig97816	9622
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:6697:62242_1:N:0:GGCTAC	Contig91350	1688
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:3167:66371_1:N:0:GGCTAC	Contig61841	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18713:67039_1:N:0:GGCTAC	Contig138552	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:11648:67395_1:N:0:GGCTAC	Contig59148	9662
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2540:68711_1:N:0:GGCTAC	Contig56887	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18990:68835_1:N:0:GGCTAC	Contig116697	2826
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:7460:71023_1:N:0:GGCTAC	Contig86987	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:14029:72994_1:N:0:GGCTAC	Contig129602	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:8431:73334_1:N:0:GGCTAC	Contig81079	1464
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:13648:73422_1:N:0:GGCTAC	Contig115301	3161
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:17381:77184_1:N:0:GGCTAC	Contig228704	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18759:78569_1:N:0:GGCTAC	Contig121917	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2119:79414_1:N:0:GGCTAC	Contig170236	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:17760:82971_1:N:0:GGCTAC	Contig406070	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:19043:83328_1:N:0:GGCTAC	Contig207708	6789
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:16640:83805_1:N:0:GGCTAC	Contig83826	2611
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:2540:86575_1:N:0:GGCTAC	Contig127394	5034
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:14225:92270_1:N:0:GGCTAC	Contig42420	2152
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:16060:92310_1:N:0:GGCTAC	Contig75547	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:5651:93633_1:N:0:GGCTAC	Contig136014	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1107:18525:96954_1:N:0:GGCTAC	Contig88941	2994
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:11053:3243_1:N:0:GGCTAC	Contig511367	1032
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:4305:5108_1:N:0:GGCTAC	Contig107057	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10746:6726_1:N:0:GGCTAC	Contig27714	40106
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10555:9399_1:N:0:GGCTAC	Contig52161	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:12839:10468_1:N:0:GGCTAC	Contig19048	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:7965:14663_1:N:0:GGCTAC	Contig194503	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1681:17451_1:N:0:GGCTAC	Contig109787	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:21104:18197_1:N:0:GGCTAC	Contig100464	14315
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:11896:22224_1:N:0:GGCTAC	Contig4371	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:6509:25261_1:N:0:GGCTAC	Contig122713	11724
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:17289:27335_1:N:0:GGCTAC	Contig45274	10457
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:12545:28489_1:N:0:GGCTAC	Contig95417	6865
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:12570:28515_1:N:0:GGCTAC	Contig95417	6865
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10737:28787_1:N:0:GGCTAC	Contig116905	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:11068:30916_1:N:0:GGCTAC	Contig146637	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:21146:33049_1:N:0:GGCTAC	Contig166792	7295
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:2551:37360_1:N:0:GGCTAC	Contig106883	2323
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:17956:38195_1:N:0:GGCTAC	Contig127062	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:17630:38802_1:N:0:GGCTAC	Contig133675	2901
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1457:42554_1:N:0:GGCTAC	Contig163104	2545
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:16930:42563_1:N:0:GGCTAC	Contig32328	1066
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10307:45186_1:N:0:GGCTAC	Contig29352	4680
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1228:45409_1:N:0:GGCTAC	Contig90762	3373
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:14965:47401_1:N:0:GGCTAC	Contig43591	13438
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:2148:48332_1:N:0:GGCTAC	Contig8484	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:6725:51116_1:N:0:GGCTAC	Contig1160	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10149:53245_1:N:0:GGCTAC	Contig37671	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:6909:53768_1:N:0:GGCTAC	Contig61983	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:13508:55868_1:N:0:GGCTAC	Contig34910	42156
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:17466:57705_1:N:0:GGCTAC	Contig16497	17612
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:2458:58261_1:N:0:GGCTAA	Contig63767	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10358:64760_1:N:0:GGCTAC	Contig15404	6577
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:2801:68919_1:N:0:GGCTAC	Contig155981	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1840:70801_1:N:0:GGCTAC	Contig84096	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:9453:72891_1:N:0:GGCTAC	Contig218481	19405
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:9960:73044_1:N:0:GGCTAC	Contig17358	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:13551:74314_1:N:0:GGCTAC	Contig128034	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:15603:77240_1:N:0:GGCTAC	Contig199604	1413
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:13278:78607_1:N:0:GGCTAC	Contig64001	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:14136:79608_1:N:0:GGCTAC	Contig202466	4695
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1715:82629_1:N:0:GGCTAC	Contig64	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:10122:82691_1:N:0:GGCTAC	Contig58022	1139
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1405:82853_1:N:0:GGCTAC	Contig145352	1543
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:6296:85521_1:N:0:GGCTAC	Contig71397	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:2764:86626_1:N:0:GGCTAC	Contig115512	1895
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:16994:92463_1:N:0:GGCTAC	Contig75707	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:4993:93354_1:N:0:GGCTAC	Contig47662	17678
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:1353:96348_1:N:0:GGCTAC	Contig239362	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:4158:98462_1:N:0:GGCTAC	Contig148681	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1108:18704:98970_1:N:0:GGCTAC	Contig61457	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:3716:3008_1:N:0:GGCTAC	Contig196877	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:1668:8694_1:N:0:GGCTAC	Contig74619	4104
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:8384:9182_1:N:0:GGCTAC	Contig108503	3177
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4479:11384_1:N:0:GGCTAC	Contig118962	1910
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:13448:12776_1:N:0:GGCTAC	Contig97156	2613
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:13468:12781_1:N:0:GGCTAC	Contig97156	2613
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6136:16977_1:N:0:GGCTAC	Contig167531	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:3552:19531_1:N:0:GGCTAC	Contig8484	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:2735:23827_1:N:0:GGCTAC	Contig165585	11280
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:20548:24585_1:N:0:GGCTAC	Contig111658	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:1479:24850_1:N:0:GGCTAC	Contig53243	7717
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6956:25153_1:N:0:GGCTAC	Contig10508	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6160:26542_1:N:0:GGCTAC	Contig92718	1234
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:18956:28346_1:N:0:GGCTAC	Contig77095	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6060:28839_1:N:0:GGCTAC	Contig361	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:7494:32570_1:N:0:GGCAAC	Contig318	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:10055:33300_1:N:0:GGCTAC	Contig95684	2446
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:19394:33720_1:N:0:GGCTAC	Contig50701	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:19945:35051_1:N:0:GGCTAC	Contig113391	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:8508:39380_1:N:0:GGCTAC	Contig15069	1467
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:18838:39302_1:N:0:GGCTAC	Contig100381	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:20834:40766_1:N:0:GGCTAC	Contig196877	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:5355:41972_1:N:0:GGCTAC	Contig145063	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:18671:41879_1:N:0:GGCTAC	Contig20989	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:15493:43076_1:N:0:GGCTAC	Contig71457	3885
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:14472:43993_1:N:0:GGCTAC	Contig147872	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:12535:46229_1:N:0:GGCTAC	Contig99763	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4693:50021_1:N:0:GGCTAC	Contig51616	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:17287:57852_1:N:0:GGCTAC	Contig1184	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4557:59826_1:N:0:GGCTAC	Contig70761	5161
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:16310:62749_1:N:0:GGCTAC	Contig47232	19659
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:5297:63533_1:N:0:GGCTAC	Contig686969	1558
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:16899:64892_1:N:0:GGCTAC	Contig209263	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:1648:66407_1:N:0:GGCTAC	Contig602905	1609
Processed 1000000 sequences so far
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:14178:70269_1:N:0:GGCTAC	Contig85217	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:5308:71292_1:N:0:GGCTAC	Contig150552	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:15609:71507_1:N:0:GGCTAC	Contig117883	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:14020:76142_1:N:0:GGCTAC	Contig175238	964
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6126:76300_1:N:0:GGCTAC	Contig99371	1901
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:16775:79497_1:N:0:GGCTAC	Contig17225	15088
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:7386:79821_1:N:0:GGCTAC	Contig153437	2293
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:17727:80574_1:N:0:GGCTAC	Contig131668	7147
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:5289:86328_1:N:0:GGCTAC	Contig144915	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:3166:86883_1:N:0:GGCTAC	Contig125275	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:6560:86803_1:N:0:GGCTAC	Contig118105	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:7110:88113_1:N:0:GGCTAC	Contig72775	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4751:89527_1:N:0:GGCTAC	Contig30371	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:18972:90152_1:N:0:GGCTAC	Contig142059	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4055:92764_1:N:0:GGCTAC	Contig39078	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:3423:93012_1:N:0:GGCTAC	Contig87394	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:10353:93698_1:N:0:GGCTAC	Contig101087	1672
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:13118:94574_1:N:0:GGCTAC	Contig7643	2085
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:11026:96859_1:N:0:GGCTAC	Contig127591	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:7507:97574_1:N:0:GGCTAC	Contig8619	1094
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:7816:98955_1:N:0:GGCTAC	Contig21658	46418
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:5964:100379_1:N:0:GGCTAC	Contig677049	2952
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1109:4895:100759_1:N:0:GGCTAC	Contig119895	2217
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:18755:2985_1:N:0:GGCTAC	Contig134251	1046
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:16644:3558_1:N:0:GGCTAC	Contig7540	1806
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:14089:4527_1:N:0:GGCTAC	Contig37626	1537
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:4971:6087_1:N:0:GGCTAC	Contig28778	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:12912:7357_1:N:0:GGCTAC	Contig34687	13718
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:14395:11757_1:N:0:GGCTAC	Contig3145	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:5176:15187_1:N:0:GGCTAC	Contig189238	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:6733:15418_1:N:0:GGCTAC	Contig90973	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:15582:16637_1:N:0:GGCTAC	Contig102530	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:5512:17321_1:N:0:GGCTAC	Contig78216	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:16304:18457_1:N:0:GGCTAC	Contig31204	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:1269:24836_1:N:0:GGCTAC	Contig48248	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:13194:28855_1:N:0:GGCTAC	Contig5404	7238
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:2324:29288_1:N:0:GGCTAC	Contig98856	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:18241:30282_1:N:0:GGCTAC	Contig54518	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:7326:31170_1:N:0:GGCTAC	Contig104660	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:16997:31914_1:N:0:GGCTAC	Contig219359	1220
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:2593:32614_1:N:0:GGCTAC	Contig193434	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:16176:34017_1:N:0:GGCTAC	Contig71612	2038
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:6988:35587_1:N:0:GGCTAC	Contig43255	2000
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:18893:37676_1:N:0:GGCTAC	Contig143892	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:12076:39171_1:N:0:GGCTAC	Contig21104	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:7530:45650_1:N:0:GGCTAC	Contig8057	8167
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:9204:46617_1:N:0:GGCTAC	Contig92992	37261
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:3241:52156_1:N:0:GGCTAC	Contig2520	40070
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:5551:57334_1:N:0:GGCTAC	Contig175955	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:17543:59986_1:N:0:GGCTAC	Contig27113	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:6158:61914_1:N:0:GGCTAC	Contig95980	17438
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:5961:62735_1:N:0:GGCTAC	Contig90228	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:20967:63757_1:N:0:GGCTAC	Contig10838	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:1840:65788_1:N:0:GGCTAC	Contig130862	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:8593:67455_1:N:0:GGCTAC	Contig59667	9613
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:17083:70399_1:N:0:GGCTAC	Contig193468	1295
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:19799:71365_1:N:0:GGCTAC	Contig5952	3407
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:10472:72190_1:N:0:GGCTAC	Contig101577	3456
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:13060:73044_1:N:0:GGCTAC	Contig375744	4840
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:11560:77268_1:N:0:GGCTAC	Contig96642	3877
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:15983:78209_1:N:0:GGCTAC	Contig56458	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:9973:81127_1:N:0:GGCTAC	Contig145862	2807
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:20857:84224_1:N:0:GGCTAC	Contig50996	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:4908:84480_1:N:0:GGCTAC	Contig117096	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:11904:84914_1:N:0:GGCTAC	Contig112725	2512
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:10029:86917_1:N:0:GGCTAC	Contig127290	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:7359:89508_1:N:0:GGCTAC	Contig105277	2001
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:7623:89883_1:N:0:GGCTAC	Contig100637	10402
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:10208:91821_1:N:0:GGCTAC	Contig5969	1732
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:17525:93235_1:N:0:GGCTAC	Contig20167	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:18120:93252_1:N:0:GGCTAC	Contig307613	1824
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:11669:93732_1:N:0:GGCTAC	Contig133384	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:11161:95765_1:N:0:GGCTAC	Contig25542	2511
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:1673:96978_1:N:0:GGCTAC	Contig76854	2311
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:10239:96962_1:N:0:GGCTAC	Contig44216	4224
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:16016:98502_1:N:0:GGCTAC	Contig189848	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1110:14973:99516_1:N:0:GGCTAC	Contig61090	7675
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:19537:3147_1:N:0:GGCTAC	Contig37166	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:19179:4283_1:N:0:GGCTAC	Contig93734	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:15106:5658_1:N:0:GGCTAC	Contig183659	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:3829:5825_1:N:0:GGCTAC	Contig68528	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:3825:7679_1:N:0:GGCTAC	Contig188477	16650
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:2793:8165_1:N:0:GGCTAC	Contig85251	2236
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:5068:10393_1:N:0:GGCTAC	Contig4304	6800
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:8243:11512_1:N:0:GGCTAC	Contig29959	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16265:12546_1:N:0:GGCTAC	Contig225807	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10986:13437_1:N:0:GGCTAC	Contig64778	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4308:14907_1:N:0:GGCTAC	Contig99341	9560
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4022:15014_1:N:0:GGCTAC	Contig211231	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16111:16074_1:N:0:GGCTAC	Contig5194	5199
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:8983:17902_1:N:0:GGCTAC	Contig65941	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:8355:19913_1:N:0:GGCTAC	Contig120305	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4730:22479_1:N:0:GGCTAC	Contig19585	24863
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:6799:25230_1:N:0:GGCTAC	Contig8767	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9956:27774_1:N:0:GGCTAC	Contig149764	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9313:31483_1:N:0:GGCTAC	Contig15404	6574
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14250:31388_1:N:0:GGCTAC	Contig167723	9194
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14298:31709_1:N:0:GGCTAC	Contig19580	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:18448:32971_1:N:0:GGCTAC	Contig16061	1076
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14984:34437_1:N:0:GGCTAC	Contig216593	3617
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:6729:39795_1:N:0:GGCTAC	Contig90489	5422
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14617:44586_1:N:0:GGCTAC	Contig33861	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9854:45406_1:N:0:GGCTAC	Contig24690	1100
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4958:47428_1:N:0:GGCTAC	Contig60743	5228
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9199:50276_1:N:0:GGCTAC	Contig143655	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16965:50742_1:N:0:GGCTAC	Contig58777	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:18164:51346_1:N:0:GGCTAC	Contig137767	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:7047:51842_1:N:0:GGCTAC	Contig119377	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:15292:54284_1:N:0:GGCTAC	Contig61396	1891
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:7532:56363_1:N:0:GGCTAC	Contig7468	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:1784:58200_1:N:0:GGCTAC	Contig388720	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:20470:60678_1:N:0:GGCTAC	Contig45613	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16307:62104_1:N:0:GGCTAC	Contig31545	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16443:62573_1:N:0:GGCTAC	Contig47895	18216
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:20997:65535_1:N:0:GGCTAC	Contig134834	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:2650:66331_1:N:0:GGCTAC	Contig16362	5541
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9348:67220_1:N:0:GGCTAC	Contig134577	1567
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:3570:67446_1:N:0:GGCTAC	Contig2927	7593
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10347:68189_1:N:0:GGCTAC	Contig123716	1073
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:16123:70692_1:N:0:GGCTAC	Contig6110	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14981:71087_1:N:0:GGCTAC	Contig181644	1939
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10478:73379_1:N:0:GGCTAC	Contig116981	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4932:75421_1:N:0:GGCTAC	Contig102343	5020
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9238:75695_1:N:0:GGCTAC	Contig68989	5217
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:3798:77112_1:N:0:GGCTAC	Contig74047	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:5003:80653_1:N:0:GGCTAC	Contig109870	2906
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4899:80960_1:N:0:GGCTAC	Contig128601	1653
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:2863:81309_1:N:0:GGCTAC	Contig123208	1662
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4615:81717_1:N:0:GTCTAC	Contig45137	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:12062:81568_1:N:0:GGCTAC	Contig76263	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:12098:81703_1:N:0:GGCTAC	Contig33626	21640
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10060:81796_1:N:0:GGCTAC	Contig95763	1376
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:6166:86556_1:N:0:GGCTAC	Contig152685	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:15316:87324_1:N:0:GGCTAC	Contig113868	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:1746:88859_1:N:0:GGCTAC	Contig72617	12948
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:6341:90715_1:N:0:GGCTAC	Contig133094	1239
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14186:90812_1:N:0:GGCTAC	Contig98561	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:9596:95063_1:N:0:GGCTAC	Contig25985	26287
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:1500:96385_1:N:0:GGCTAC	Contig206121	1908
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:3829:96988_1:N:0:GGCTAC	Contig166932	1078
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:4378:97817_1:N:0:GGCTAC	Contig645415	10987
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10867:98978_1:N:0:GGCTAC	Contig127018	16043
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:10918:98991_1:N:0:GGCTAC	Contig127018	16043
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:11395:99013_1:N:0:GGCTAC	Contig41295	7587
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1111:14223:100348_1:N:0:GGCTAC	Contig72295	29909
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10484:2152_1:N:0:GGCTAC	Contig63238	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10122:2905_1:N:0:GGCTAC	Contig140848	3333
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:8829:4277_1:N:0:GGCTAC	Contig31326	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15065:5650_1:N:0:GGGTAC	Contig67672	20186
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15488:6034_1:N:0:GGCTAC	Contig146219	1849
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12763:6485_1:N:0:GGCTAC	Contig131219	2464
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:3255:7108_1:N:0:GGCTAC	Contig90228	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10975:7969_1:N:0:GGCTAC	Contig10988	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:3638:9202_1:N:0:GGCTAC	Contig138245	1707
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:6229:12318_1:N:0:GGCTAC	Contig57450	4529
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:18310:14553_1:N:0:GGCTAC	Contig126417	1579
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:6033:17898_1:N:0:GGCTAC	Contig16849	12290
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12872:18976_1:N:0:GGCTAC	Contig17961	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:9021:19356_1:N:0:GGCTAC	Contig203423	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15811:20452_1:N:0:GGCTAC	Contig142429	5598
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:9797:25354_1:N:0:GGCTAC	Contig9568	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:1554:26216_1:N:0:GGCTAC	Contig4757	9981
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:6420:29732_1:N:0:GGCTAC	Contig126293	4529
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:3743:30992_1:N:0:GGCTAC	Contig181863	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15703:34232_1:N:0:GGCTAC	Contig114335	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:16363:34550_1:N:0:GGCTAC	Contig84109	1550
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:14068:36753_1:N:0:GGCTAC	Contig546720	2754
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:6810:40775_1:N:0:GGCTAC	Contig50141	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12372:42758_1:N:0:GGCTAC	Contig163273	1343
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12869:48778_1:N:0:GGCTAC	Contig133199	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:17704:55070_1:N:0:GGCTAC	Contig399	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10012:55306_1:N:0:GGCTAC	Contig114737	1023
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:7732:55565_1:N:0:GGCTAC	Contig45670	2640
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15612:55820_1:N:0:GGCTAC	Contig189238	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12961:60178_1:N:0:GGCTAC	Contig94365	6805
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:17788:60086_1:N:0:GGCTAC	Contig219323	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:5298:61308_1:N:0:GGCTAC	Contig56950	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:2714:61685_1:N:0:GGCTAC	Contig96142	1333
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:7249:62171_1:N:0:GGCTAC	Contig125691	12750
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:4912:64859_1:N:0:GGCTAC	Contig110718	4315
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:16375:65449_1:N:0:GGCTAC	Contig114335	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:13898:72430_1:N:0:GGCTAC	Contig6530	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:4604:72941_1:N:0:GGCTAC	Contig188274	1032
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:17092:74006_1:N:0:GGCTAC	Contig110899	15377
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:19542:74227_1:N:0:GGCTAC	Contig10934	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:4816:76533_1:N:0:GGCTAC	Contig114070	2606
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:18917:79877_1:N:0:GGCTAC	Contig86905	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15123:80733_1:N:0:GGCTAC	Contig6414	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:15518:82052_1:N:0:GGCTAC	Contig131711	9645
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:7290:82640_1:N:0:GGCTAC	Contig6438	2132
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:5511:85764_1:N:0:GGCTAC	Contig110511	1653
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:7485:85940_1:N:0:GGCTAC	Contig15044	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:12707:86864_1:N:0:GGCTAC	Contig84109	1550
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:19203:87037_1:N:0:GGCTAC	Contig106939	9545
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:9276:91967_1:N:0:GGCTAC	Contig8839	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:14416:92445_1:N:0:GGCTAC	Contig71593	3014
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:19220:92530_1:N:0:GGCTAC	Contig93476	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:11448:93443_1:N:0:GGCTAC	Contig22093	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:13265:93549_1:N:0:GGCTAC	Contig136629	2641
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:7784:97159_1:N:0:GGCTAC	Contig120808	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10786:97402_1:N:0:GGCTAC	Contig61578	4080
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10785:100446_1:N:0:GGCTAC	Contig4479	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1112:10820:100459_1:N:0:GGCTAC	Contig4479	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:17360:3702_1:N:0:GGCTAC	Contig7149	8553
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9057:7465_1:N:0:GGCTAC	Contig71542	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:16499:7731_1:N:0:GGCTAC	Contig37332	9320
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:4942:8229_1:N:0:GGCTAC	Contig186541	1085
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:14711:9906_1:N:0:GGCTAC	Contig7140	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:12264:14063_1:N:0:GGCTAC	Contig63243	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:5653:14648_1:N:0:GGCTAC	Contig78323	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:11635:14694_1:N:0:GGCTAC	Contig128936	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:10566:17979_1:N:0:GGCTAC	Contig102452	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13771:18755_1:N:0:GGCTAC	Contig73970	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:10758:20679_1:N:0:GGCTAC	Contig55859	6872
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:12334:20589_1:N:0:GGCTAC	Contig89678	5787
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13114:24396_1:N:0:GGCTAC	Contig146754	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13149:25533_1:N:0:GGCTAC	Contig7777	7309
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13992:26187_1:N:0:GGCTAC	Contig81720	3877
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:18722:26361_1:N:0:GGCTAC	Contig73565	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:8401:27991_1:N:0:GGCTAC	Contig39662	5039
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:8802:31503_1:N:0:GGCTAC	Contig112668	1903
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:15442:34528_1:N:0:GGCTAC	Contig74833	7963
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:15080:35345_1:N:0:GGCTAC	Contig145510	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:2832:41725_1:N:0:GGCTAC	Contig50097	5564
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9208:43911_1:N:0:GGCTAC	Contig147594	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:12303:45592_1:N:0:GGCTAC	Contig1201	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:4082:45927_1:N:0:GGCTAC	Contig32854	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:18581:46682_1:N:0:GGCTAC	Contig122791	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:3691:46977_1:N:0:GGCTAC	Contig75323	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:5671:47870_1:N:0:GGCTAC	Contig35845	15685
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:4490:53064_1:N:0:GGCTAC	Contig56507	9745
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:14670:55731_1:N:0:GGCTAC	Contig138	37921
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9152:55919_1:N:0:GGCTAC	Contig114928	1371
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:1224:56195_1:N:0:GGCTAC	Contig87694	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:7977:56997_1:N:0:GGCTAC	Contig49846	6934
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:19594:57371_1:N:0:GGCTAC	Contig49391	4814
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:11762:60244_1:N:0:GGCTAC	Contig198052	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:14077:60868_1:N:0:GGCTAC	Contig6521	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:17982:60966_1:N:0:GGCTAC	Contig68585	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:12729:61312_1:N:0:GGCTAC	Contig116106	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:16137:64160_1:N:0:GGCTAC	Contig104454	2688
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9456:66410_1:N:0:GGCTAC	Contig74558	5048
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9901:66979_1:N:0:GGCTAC	Contig97649	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:6601:68157_1:N:0:GGCTAC	Contig89795	1484
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13452:68333_1:N:0:GGCTAC	Contig134978	1222
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:6781:68561_1:N:0:GGCTAC	Contig186354	3969
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:15534:70539_1:N:0:GGCTAC	Contig80717	12336
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:17865:73414_1:N:0:GGCTAC	Contig64813	14092
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:18070:74929_1:N:0:GGCTAC	Contig88618	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:7450:77903_1:N:0:GGCTAC	Contig61488	1683
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:19190:78193_1:N:0:GGCTAC	Contig71264	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:7014:80578_1:N:0:GGCTAC	Contig8057	8167
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:14443:81941_1:N:0:GGCTAC	Contig153437	2293
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:15156:81927_1:N:0:GGCTAC	Contig127350	1592
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:15374:82569_1:N:0:GGCTAC	Contig126517	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:8679:87968_1:N:0:GGCTAC	Contig34150	5128
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:11541:88131_1:N:0:GGCTAC	Contig1683	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:8341:88797_1:N:0:GGCTAC	Contig54598	5814
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:9023:89332_1:N:0:GGCTAC	Contig121879	1087
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:5060:92379_1:N:0:GGCTAC	Contig29403	7838
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:2011:96049_1:N:0:GGCTAC	Contig196212	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:2207:96586_1:N:0:GGCTAC	Contig149637	5111
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1113:13832:99196_1:N:0:GGCTAC	Contig217077	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:4440:4036_1:N:0:GGCTAC	Contig52087	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:16203:6612_1:N:0:GGCTAC	Contig58508	14763
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:7411:9336_1:N:0:GGCTAC	Contig56312	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:6479:18776_1:N:0:GGCTAC	Contig91563	4015
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:9293:19222_1:N:0:GGCTAC	Contig122347	1186
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:2676:20185_1:N:0:GGCTAC	Contig2617	12614
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:19864:24024_1:N:0:GGCTAC	Contig216768	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8307:26266_1:N:0:GGCTAC	Contig59187	1690
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:3930:31445_1:N:0:GGCTAC	Contig127544	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:5401:33299_1:N:0:GGCTAC	Contig124997	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:5225:34362_1:N:0:GGCTAC	Contig45613	5509
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:9400:36511_1:N:0:GGCTAC	Contig55426	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:14905:36890_1:N:0:GGCTAC	Contig85993	3527
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:5443:37032_1:N:0:GGCTAC	Contig46423	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:16965:38498_1:N:0:GGCTAC	Contig3788	17305
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:11480:40062_1:N:0:GGCTAC	Contig83767	1781
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:9588:40693_1:N:0:GGCTAC	Contig214030	1156
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:11441:43219_1:N:0:GGCTAC	Contig113794	1881
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:12863:43471_1:N:0:GGCTAC	Contig83844	1462
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:4358:46013_1:N:0:GGCTAC	Contig145014	4757
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8725:46295_1:N:0:GGCTAC	Contig260078	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13171:47804_1:N:0:GGCTAC	Contig15783	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:3665:49069_1:N:0:GGCTAC	Contig6226	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8544:49592_1:N:0:GGCTAC	Contig98383	1663
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:4563:51589_1:N:0:GGCTAC	Contig92992	37261
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:19355:51535_1:N:0:GGCTAC	Contig111491	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:12775:51946_1:N:0:GGCTAC	Contig6438	2132
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:7627:52966_1:N:0:GGCTAC	Contig200447	967
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13726:52916_1:N:0:GGCTAC	Contig184016	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:18114:54950_1:N:0:GGCTAC	Contig218610	1922
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8613:55443_1:N:0:GGCTAC	Contig3749	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:7372:55734_1:N:0:GGCTAC	Contig130735	14270
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8770:58208_1:N:0:GGCTAC	Contig12444	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:3213:58625_1:N:0:GGCTAC	Contig135738	9758
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13326:59804_1:N:0:GGCTAC	Contig165592	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:7843:61274_1:N:0:GGCTAC	Contig79803	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:8032:61860_1:N:0:GGCTAC	Contig23485	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:12202:62745_1:N:0:GGCTAC	Contig59064	6122
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:10050:63779_1:N:0:GGCTAC	Contig178528	10973
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:1310:66839_1:N:0:GGCTAC	Contig181853	1243
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:20552:66815_1:N:0:GGCTAC	Contig65561	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:3141:67701_1:N:0:GGCTAC	Contig48205	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:2675:67885_1:N:0:GGCTAC	Contig170895	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:19885:68141_1:N:0:GGCTAC	Contig119497	1025
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:17104:69025_1:N:0:GGCTAC	Contig126522	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:10141:71375_1:N:0:GGCTAC	Contig67831	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:6490:71768_1:N:0:GGCTAC	Contig120495	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:17055:72136_1:N:0:GGCTAC	Contig3145	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13225:72772_1:N:0:GGCTAC	Contig37412	1218
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:18494:72898_1:N:0:GGCTAC	Contig167634	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13415:73332_1:N:0:GGCTAC	Contig114179	1193
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:15589:74245_1:N:0:GGCTAC	Contig105069	3686
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:15742:74932_1:N:0:GGCTAC	Contig92992	37261
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:13681:76108_1:N:0:GGCTAC	Contig53683	3546
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:1969:76702_1:N:0:GGCTAC	Contig6438	2132
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:1932:77012_1:N:0:GGCTAC	Contig102898	10846
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:15168:80717_1:N:0:GGCTAC	Contig131711	9645
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:9174:83457_1:N:0:GGCTAC	Contig31075	2495
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:14802:83434_1:N:0:GGCTAC	Contig87386	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:5037:83915_1:N:0:GGCTAC	Contig148049	1304
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:9464:85027_1:N:0:GGCTAC	Contig86946	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:20014:85495_1:N:0:GGCTAC	Contig62387	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:20575:85355_1:N:0:GGCTAC	Contig84627	1848
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:14784:85969_1:N:0:GGCTAC	Contig35969	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:1850:88720_1:N:0:GGCTAC	Contig57102	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:19413:90623_1:N:0:GGCTAC	Contig112725	2509
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:12559:94880_1:N:0:GGCTAC	Contig183764	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:14945:96780_1:N:0:GGCTAC	Contig67402	5599
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:2841:98411_1:N:0:GGCTAC	Contig9880	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1114:17780:99821_1:N:0:GGCTAC	Contig52748	1569
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:12218:3203_1:N:0:GGCTAC	Contig62212	4092
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:14472:3674_1:N:0:GGCTAC	Contig54334	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:4363:5212_1:N:0:GGCTAC	Contig69467	3327
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:9909:8828_1:N:0:GGCTAC	Contig219410	3004
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:10556:10754_1:N:0:GGCTAC	Contig110690	4607
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20817:11539_1:N:0:GGCTAC	Contig124338	1734
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:12373:14227_1:N:0:GGCTAC	Contig42509	12133
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:14655:15586_1:N:0:GGCTAC	Contig74009	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20290:16208_1:N:0:GGCTAC	Contig74333	7133
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:3329:17254_1:N:0:GGCTAC	Contig218623	1417
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:18073:18687_1:N:0:GGCTAC	Contig154469	1232
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:5155:19833_1:N:0:GGCTAC	Contig99098	5086
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20445:22436_1:N:0:GGCTAC	Contig34270	19220
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:14894:26305_1:N:0:GGCTAC	Contig139683	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:18757:27299_1:N:0:GGCTAC	Contig456942	1002
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:10985:27928_1:N:0:GGCTAC	Contig44123	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:5886:30062_1:N:0:GGCTAC	Contig108467	1255
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:18964:33157_1:N:0:GGCTAC	Contig65230	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20772:33824_1:N:0:GGCTAC	Contig146158	10477
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:19248:34679_1:N:0:GGCTAC	Contig91563	4017
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:2216:38780_1:N:0:GGCTAC	Contig64427	9237
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:3697:44251_1:N:0:GGCTAC	Contig198702	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:8087:46897_1:N:0:GGCTAC	Contig115117	2970
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:16091:47704_1:N:0:GGCTAC	Contig200318	5126
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:1197:51475_1:N:0:GGCTAC	Contig59948	7735
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:16692:51743_1:N:0:GGCTAC	Contig29319	21662
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:16066:53883_1:N:0:GGCTAC	Contig146627	10983
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:8939:55499_1:N:0:GGCTAC	Contig53263	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:4311:59545_1:N:0:GGCTAC	Contig75013	1717
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20092:60438_1:N:0:GGCTAC	Contig23252	13666
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:1970:60689_1:N:0:GGCTAC	Contig59723	14445
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:9566:62074_1:N:0:GGCTAC	Contig249652	1232
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:4476:66305_1:N:0:GGCTAC	Contig51230	19233
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20586:71857_1:N:0:GGCTAC	Contig206796	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:4090:72084_1:N:0:GGCTAC	Contig137459	987
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:2293:72947_1:N:0:GGCTAC	Contig679387	1025
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:2953:76527_1:N:0:GGCTAC	Contig77834	5705
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:3285:77416_1:N:0:GGCTAC	Contig76834	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:10224:79456_1:N:0:GGCTAC	Contig41102	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:11713:79998_1:N:0:GGCTAC	Contig99249	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:11949:83498_1:N:0:GGCTAC	Contig72160	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:5390:84499_1:N:0:GGATAC	Contig108393	4585
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:13588:84359_1:N:0:GGCTAC	Contig23588	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:17912:90090_1:N:0:GGCTAC	Contig166307	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:13941:91199_1:N:0:GGCTAC	Contig52742	9873
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:17764:91343_1:N:0:GGCTGC	Contig93072	4548
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:6601:92239_1:N:0:GGCTAC	Contig53925	3061
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:11354:94117_1:N:0:GGCTAC	Contig124992	1108
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:20575:94773_1:N:0:GGCTAC	Contig146443	10525
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:1449:95710_1:N:0:GGCTAC	Contig108412	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:7631:96031_1:N:0:GGCTAC	Contig188750	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:9710:96999_1:N:0:GGCTAC	Contig6097	5314
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:16323:98350_1:N:0:GGCTAC	Contig112668	1903
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:7430:99928_1:N:0:GGCTAC	Contig108954	5154
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1115:7293:100880_1:N:0:GGCTAC	Contig36769	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:10814:3550_1:N:0:GGCTAC	Contig5902	12379
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:3231:7009_1:N:0:GGCTAC	Contig111858	1037
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:11470:7101_1:N:0:GGCTAC	Contig514612	2
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:7616:10364_1:N:0:GGCTAC	Contig58942	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:2204:11378_1:N:0:GGCTAC	Contig79093	14718
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:15929:17288_1:N:0:GGCTAC	Contig39102	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:12864:18792_1:N:0:GGCTAC	Contig100381	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:10352:20120_1:N:0:GGGTAC	Contig44890	16079
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:6291:21458_1:N:0:GGCTAC	Contig88010	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:4448:30724_1:N:0:GGCTAC	Contig39158	1
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:10170:34421_1:N:0:GGCTAC	Contig2622	1
2000000 reads; of these:
  2000000 (100.00%) were unpaired; of these:
    745008 (37.25%) aligned 0 times
    410119 (20.51%) aligned exactly 1 time
    844873 (42.24%) aligned >1 times
62.75% overall alignment rate
2000000 reads; of these:
  2000000 (100.00%) were unpaired; of these:
    746458 (37.32%) aligned 0 times
    411770 (20.59%) aligned exactly 1 time
    841772 (42.09%) aligned >1 times
62.68% overall alignment rate
Chromosomal sequence could not be extracted for	HWI-D00743:54:C8MOMACXX:1:1116:6705:36529_1:N:0:GGCTAC	Contig47896	1
Processed 2000000 sequences so far

Successfully deleted the temporary file olur_bsseq_all_R1.fastq.gz_C_to_T.fastq

Final Alignment report
======================
Sequences analysed in total:	2000000
Number of alignments with a unique best hit from the different alignments:	1087693
Mapping efficiency:	54.4%

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	9569425

Total methylated C's in CpG context:	488699
Total methylated C's in CHG context:	55998
Total methylated C's in CHH context:	109662
Total methylated C's in Unknown context:	2939

Total unmethylated C's in CpG context:	1119419
Total unmethylated C's in CHG context:	1963491
Total unmethylated C's in CHH context:	5832156
Total unmethylated C's in Unknown context:	34902

C methylated in CpG context:	30.4%
C methylated in CHG context:	2.8%
C methylated in CHH context:	1.8%
C methylated in Unknown context (CN or CHN):	7.8%


Bismark completed in 0d 0h 10m 49s

====================
Bismark run complete
====================