olur_bsseq_all_R1_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 1015676 lines in total Total number of methylation call strings processed: 1015676 Final Cytosine Methylation Report ================================= Total number of C's analysed: 8975662 Total methylated C's in CpG context: 451855 Total methylated C's in CHG context: 52371 Total methylated C's in CHH context: 104552 Total C to T conversions in CpG context: 1040164 Total C to T conversions in CHG context: 1812972 Total C to T conversions in CHH context: 5513748 C methylated in CpG context: 30.3% C methylated in CHG context: 2.8% C methylated in CHH context: 1.9%