olur_bsseq_all_R1_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 519351 lines in total Total number of methylation call strings processed: 519351 Final Cytosine Methylation Report ================================= Total number of C's analysed: 4581496 Total methylated C's in CpG context: 230089 Total methylated C's in CHG context: 26575 Total methylated C's in CHH context: 52778 Total C to T conversions in CpG context: 532103 Total C to T conversions in CHG context: 924915 Total C to T conversions in CHH context: 2815036 C methylated in CpG context: 30.2% C methylated in CHG context: 2.8% C methylated in CHH context: 1.8%