pgen_bsseq_all_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 2407295 lines in total Total number of methylation call strings processed: 4814590 Final Cytosine Methylation Report ================================= Total number of C's analysed: 57096302 Total methylated C's in CpG context: 1913110 Total methylated C's in CHG context: 263570 Total methylated C's in CHH context: 456852 Total C to T conversions in CpG context: 6193715 Total C to T conversions in CHG context: 11614263 Total C to T conversions in CHH context: 36654792 C methylated in CpG context: 23.6% C methylated in CHG context: 2.2% C methylated in CHH context: 1.2%