/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 05:26 on 2019-02-24
Alignment
Sequence pairs analysed in total
5000000
Paired-end alignments with a unique best hit
2408640
Pairs without alignments under any condition
2005491
Pairs that did not map uniquely
585869
Genomic sequence context not extractable (edges of chromosomes)
1345
Cytosine Methylation
Total C's analysed
76922203
Methylated C's in CpG context
2514490
Methylated C's in CHG context
344001
Methylated C's in CHH context
608941
Methylated C's in Unknown context
10413
Unmethylated C's in CpG context
8393164
Unmethylated C's in CHG context
15815955
Unmethylated C's in CHH context
49245652
Unmethylated C's in Unknown context
149595
Percentage methylation (CpG context)
23.1%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1217562
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
1189733
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions