/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 03:43 on 2019-02-24
Alignment
Sequence pairs analysed in total
500000
Paired-end alignments with a unique best hit
240349
Pairs without alignments under any condition
201346
Pairs that did not map uniquely
58305
Genomic sequence context not extractable (edges of chromosomes)
135
Cytosine Methylation
Total C's analysed
7681712
Methylated C's in CpG context
250800
Methylated C's in CHG context
34031
Methylated C's in CHH context
61819
Methylated C's in Unknown context
1183
Unmethylated C's in CpG context
839840
Unmethylated C's in CHG context
1579285
Unmethylated C's in CHH context
4915937
Unmethylated C's in Unknown context
14929
Percentage methylation (CpG context)
23.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
121506
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
118708
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions