/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 04:23 on 2019-02-24
Alignment
Sequence pairs analysed in total
2000000
Paired-end alignments with a unique best hit
962267
Pairs without alignments under any condition
803983
Pairs that did not map uniquely
233750
Genomic sequence context not extractable (edges of chromosomes)
574
Cytosine Methylation
Total C's analysed
30758601
Methylated C's in CpG context
1004824
Methylated C's in CHG context
136756
Methylated C's in CHH context
244031
Methylated C's in Unknown context
4330
Unmethylated C's in CpG context
3357987
Unmethylated C's in CHG context
6321788
Unmethylated C's in CHH context
19693215
Unmethylated C's in Unknown context
59714
Percentage methylation (CpG context)
23.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
486592
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
475101
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions