/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 03:57 on 2019-02-24
Alignment
Sequence pairs analysed in total
1000000
Paired-end alignments with a unique best hit
480905
Pairs without alignments under any condition
402078
Pairs that did not map uniquely
117017
Genomic sequence context not extractable (edges of chromosomes)
271
Cytosine Methylation
Total C's analysed
15377482
Methylated C's in CpG context
502458
Methylated C's in CHG context
68191
Methylated C's in CHH context
122863
Methylated C's in Unknown context
2245
Unmethylated C's in CpG context
1680475
Unmethylated C's in CHG context
3160679
Unmethylated C's in CHH context
9842816
Unmethylated C's in Unknown context
29888
Percentage methylation (CpG context)
23.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
243113
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
237521
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions