/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 03:36 on 2019-02-24
Alignment
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
48184
Pairs without alignments under any condition
40187
Pairs that did not map uniquely
11629
Genomic sequence context not extractable (edges of chromosomes)
36
Cytosine Methylation
Total C's analysed
1536187
Methylated C's in CpG context
49738
Methylated C's in CHG context
6801
Methylated C's in CHH context
11943
Methylated C's in Unknown context
218
Unmethylated C's in CpG context
167533
Unmethylated C's in CHG context
314808
Unmethylated C's in CHH context
985364
Unmethylated C's in Unknown context
3050
Percentage methylation (CpG context)
22.9%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
24377
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
23771
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions