pgen_bsseq_all_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 2630890 lines in total Total number of methylation call strings processed: 5261780 Final Cytosine Methylation Report ================================= Total number of C's analysed: 62788001 Total methylated C's in CpG context: 2036379 Total methylated C's in CHG context: 288895 Total methylated C's in CHH context: 494586 Total C to T conversions in CpG context: 6845506 Total C to T conversions in CHG context: 12880942 Total C to T conversions in CHH context: 40241693 C methylated in CpG context: 22.9% C methylated in CHG context: 2.2% C methylated in CHH context: 1.2%