CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47866 97342 32.96 145208 2 43317 102841 29.64 146158 3 39551 86129 31.47 125680 4 40188 62339 39.20 102527 5 37385 54735 40.58 92120 6 37279 47153 44.15 84432 7 40690 45782 47.06 86472 8 19019 53590 26.19 72609 9 17188 52716 24.59 69904 10 17409 47112 26.98 64521 11 18097 50516 26.38 68613 12 17519 48616 26.49 66135 13 16687 50168 24.96 66855 14 15653 51672 23.25 67325 15 15121 51020 22.86 66141 16 14036 49930 21.94 63966 17 13256 49138 21.25 62394 18 13559 51303 20.90 64862 19 13349 50736 20.83 64085 20 13439 49304 21.42 62743 21 13851 49161 21.98 63012 22 13538 47777 22.08 61315 23 13183 47826 21.61 61009 24 13140 47619 21.63 60759 25 12648 47991 20.86 60639 26 12932 60819 17.53 73751 27 12976 51904 20.00 64880 28 13419 52961 20.22 66380 29 13127 52180 20.10 65307 30 12799 49421 20.57 62220 31 13040 48561 21.17 61601 32 12821 47438 21.28 60259 33 13055 48383 21.25 61438 34 13229 48708 21.36 61937 35 12800 49184 20.65 61984 36 12546 49537 20.21 62083 37 12169 48167 20.17 60336 38 12470 47518 20.79 59988 39 12369 48108 20.45 60477 40 12758 46504 21.53 59262 41 12302 45910 21.13 58212 42 12762 48106 20.97 60868 43 12521 47014 21.03 59535 44 12540 45041 21.78 57581 45 12684 44743 22.09 57427 46 13207 47787 21.65 60994 47 12735 45901 21.72 58636 48 12533 47081 21.02 59614 49 12833 45711 21.92 58544 50 12613 46634 21.29 59247 51 12571 45245 21.74 57816 52 12749 47106 21.30 59855 53 12219 44731 21.46 56950 54 12007 43419 21.66 55426 55 12203 45534 21.14 57737 56 11962 42346 22.03 54308 57 12328 43494 22.08 55822 58 12507 44092 22.10 56599 59 12269 44050 21.78 56319 60 12075 44972 21.17 57047 61 12341 46252 21.06 58593 62 11882 46423 20.38 58305 63 11816 45059 20.78 56875 64 11794 44342 21.01 56136 65 12233 45456 21.21 57689 66 12276 43944 21.84 56220 67 11922 42801 21.79 54723 68 11477 42160 21.40 53637 69 11725 41992 21.83 53717 70 11454 42836 21.10 54290 71 11307 40971 21.63 52278 72 11126 41802 21.02 52928 73 11103 41169 21.24 52272 74 11303 40708 21.73 52011 75 10862 41397 20.78 52259 76 10886 41106 20.94 51992 77 11050 39645 21.80 50695 78 11034 39991 21.62 51025 79 10748 52743 16.93 63491 80 10591 41462 20.35 52053 81 10511 42879 19.69 53390 82 10481 39740 20.87 50221 83 10587 39402 21.18 49989 84 10584 38643 21.50 49227 85 10421 37961 21.54 48382 86 10231 41197 19.89 51428 87 10087 40181 20.07 50268 88 10266 40517 20.22 50783 89 9804 37489 20.73 47293 90 9718 38110 20.32 47828 91 9678 39750 19.58 49428 92 9398 38186 19.75 47584 93 9573 36982 20.56 46555 94 9797 36431 21.19 46228 95 9521 37342 20.32 46863 96 9957 36782 21.30 46739 97 9579 50806 15.86 60385 98 8528 35859 19.21 44387 99 6807 28815 19.11 35622 100 8711 33141 20.81 41852 101 7824 32699 19.31 40523 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 77630 91163 45.99 168793 2 44483 79145 35.98 123628 3 16025 75743 17.46 91768 4 6879 84142 7.56 91021 5 4096 78264 4.97 82360 6 3274 74212 4.23 77486 7 2552 95657 2.60 98209 8 1112 100633 1.09 101745 9 981 96520 1.01 97501 10 883 90866 0.96 91749 11 921 90774 1.00 91695 12 942 91785 1.02 92727 13 737 87680 0.83 88417 14 723 86409 0.83 87132 15 699 87114 0.80 87813 16 625 88395 0.70 89020 17 593 85735 0.69 86328 18 570 84989 0.67 85559 19 575 88692 0.64 89267 20 610 93088 0.65 93698 21 640 92435 0.69 93075 22 629 91096 0.69 91725 23 621 90581 0.68 91202 24 605 90463 0.66 91068 25 595 86999 0.68 87594 26 626 89993 0.69 90619 27 619 90874 0.68 91493 28 593 90598 0.65 91191 29 772 120698 0.64 121470 30 637 97750 0.65 98387 31 611 98895 0.61 99506 32 630 92034 0.68 92664 33 585 90609 0.64 91194 34 602 91988 0.65 92590 35 611 90636 0.67 91247 36 602 91874 0.65 92476 37 593 86876 0.68 87469 38 632 89303 0.70 89935 39 604 90580 0.66 91184 40 629 89008 0.70 89637 41 621 92339 0.67 92960 42 600 89409 0.67 90009 43 624 87972 0.70 88596 44 630 90005 0.70 90635 45 629 89700 0.70 90329 46 686 89928 0.76 90614 47 653 87968 0.74 88621 48 776 119427 0.65 120203 49 662 94963 0.69 95625 50 715 94445 0.75 95160 51 723 93202 0.77 93925 52 716 91032 0.78 91748 53 840 114395 0.73 115235 54 719 96453 0.74 97172 55 660 92692 0.71 93352 56 746 88447 0.84 89193 57 719 88698 0.80 89417 58 1088 118394 0.91 119482 59 833 96808 0.85 97641 60 768 95953 0.79 96721 61 758 89334 0.84 90092 62 778 87611 0.88 88389 63 766 89668 0.85 90434 64 728 89485 0.81 90213 65 764 88419 0.86 89183 66 782 84929 0.91 85711 67 742 82777 0.89 83519 68 906 111139 0.81 112045 69 850 89995 0.94 90845 70 807 87654 0.91 88461 71 718 84035 0.85 84753 72 761 82343 0.92 83104 73 736 81735 0.89 82471 74 822 83258 0.98 84080 75 777 81420 0.95 82197 76 734 78243 0.93 78977 77 714 78625 0.90 79339 78 765 81105 0.93 81870 79 784 78210 0.99 78994 80 771 83298 0.92 84069 81 713 78609 0.90 79322 82 715 77419 0.92 78134 83 710 79190 0.89 79900 84 709 78536 0.89 79245 85 809 78472 1.02 79281 86 725 77643 0.93 78368 87 759 77128 0.97 77887 88 747 74169 1.00 74916 89 749 73707 1.01 74456 90 728 74201 0.97 74929 91 707 72987 0.96 73694 92 798 73791 1.07 74589 93 809 72466 1.10 73275 94 771 71912 1.06 72683 95 801 70620 1.12 71421 96 834 70473 1.17 71307 97 764 64039 1.18 64803 98 686 58396 1.16 59082 99 468 37526 1.23 37994 100 477 38563 1.22 39040 101 1084 63741 1.67 64825 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 62129 92037 40.30 154166 2 27235 95912 22.12 123147 3 11794 128125 8.43 139919 4 9339 142082 6.17 151421 5 8047 175962 4.37 184009 6 6482 194542 3.22 201024 7 5788 253733 2.23 259521 8 3305 295592 1.11 298897 9 2607 253978 1.02 256585 10 2507 247044 1.00 249551 11 2594 245498 1.05 248092 12 2328 245385 0.94 247713 13 2477 247664 0.99 250141 14 2485 252792 0.97 255277 15 2304 261616 0.87 263920 16 2286 266528 0.85 268814 17 2568 301936 0.84 304504 18 2352 286582 0.81 288934 19 2231 287937 0.77 290168 20 2354 290978 0.80 293332 21 2285 292218 0.78 294503 22 2388 290846 0.81 293234 23 2473 296638 0.83 299111 24 2447 327346 0.74 329793 25 2504 305139 0.81 307643 26 2639 324357 0.81 326996 27 2484 314036 0.78 316520 28 2334 309200 0.75 311534 29 2571 303210 0.84 305781 30 2377 300011 0.79 302388 31 2287 292944 0.77 295231 32 2489 294896 0.84 297385 33 2297 291759 0.78 294056 34 2480 291258 0.84 293738 35 2536 293642 0.86 296178 36 2439 326675 0.74 329114 37 2429 306783 0.79 309212 38 2599 306831 0.84 309430 39 2433 330122 0.73 332555 40 2386 301451 0.79 303837 41 2536 299244 0.84 301780 42 2480 325571 0.76 328051 43 2676 301018 0.88 303694 44 2930 332090 0.87 335020 45 2689 329906 0.81 332595 46 2719 337227 0.80 339946 47 2655 312689 0.84 315344 48 2512 307677 0.81 310189 49 2583 297609 0.86 300192 50 2645 292831 0.90 295476 51 2345 288996 0.80 291341 52 2450 314453 0.77 316903 53 2646 291648 0.90 294294 54 2473 288946 0.85 291419 55 2525 286798 0.87 289323 56 2748 314813 0.87 317561 57 2482 328768 0.75 331250 58 3147 300164 1.04 303311 59 2712 296714 0.91 299426 60 2354 283544 0.82 285898 61 2405 282825 0.84 285230 62 2491 279203 0.88 281694 63 2396 275687 0.86 278083 64 2538 303608 0.83 306146 65 2551 279839 0.90 282390 66 2431 302128 0.80 304559 67 2499 307473 0.81 309972 68 2609 283830 0.91 286439 69 2336 279250 0.83 281586 70 2308 270751 0.85 273059 71 2566 270928 0.94 273494 72 2346 268048 0.87 270394 73 2493 265361 0.93 267854 74 2457 265002 0.92 267459 75 2284 264530 0.86 266814 76 2368 264816 0.89 267184 77 2405 260798 0.91 263203 78 2209 260183 0.84 262392 79 2231 259746 0.85 261977 80 2365 258040 0.91 260405 81 2234 253031 0.88 255265 82 2324 249264 0.92 251588 83 2483 253283 0.97 255766 84 2366 278830 0.84 281196 85 2218 251818 0.87 254036 86 2405 271684 0.88 274089 87 2083 244791 0.84 246874 88 2137 243979 0.87 246116 89 2302 243937 0.93 246239 90 2157 238621 0.90 240778 91 2111 235328 0.89 237439 92 2219 234345 0.94 236564 93 2225 231903 0.95 234128 94 2113 229398 0.91 231511 95 2331 227022 1.02 229353 96 2158 220952 0.97 223110 97 2108 217175 0.96 219283 98 2025 201713 0.99 203738 99 1348 142136 0.94 143484 100 1341 125320 1.06 126661 101 2125 219830 0.96 221955 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28847 42523 40.42 71370 2 26288 40934 39.11 67222 3 28293 44854 38.68 73147 4 27140 49755 35.29 76895 5 11369 62056 15.48 73425 6 6437 31832 16.82 38269 7 5928 34195 14.77 40123 8 6095 34514 15.01 40609 9 5640 31813 15.06 37453 10 6167 32749 15.85 38916 11 6569 34934 15.83 41503 12 6533 39452 14.21 45985 13 6646 29920 18.18 36566 14 7103 32702 17.84 39805 15 6908 28195 19.68 35103 16 6567 28105 18.94 34672 17 7762 32222 19.41 39984 18 7464 28542 20.73 36006 19 7194 30328 19.17 37522 20 6839 27456 19.94 34295 21 7094 25847 21.54 32941 22 7020 26807 20.75 33827 23 6675 24879 21.15 31554 24 6685 26751 19.99 33436 25 7689 27590 21.79 35279 26 6569 27718 19.16 34287 27 7827 25600 23.42 33427 28 6471 22923 22.01 29394 29 6715 24790 21.31 31505 30 6364 31275 16.91 37639 31 6169 24109 20.37 30278 32 5974 22468 21.00 28442 33 6497 22162 22.67 28659 34 6544 24847 20.85 31391 35 7463 25128 22.90 32591 36 6539 25305 20.53 31844 37 6523 22022 22.85 28545 38 6134 22664 21.30 28798 39 6131 22211 21.63 28342 40 6518 22501 22.46 29019 41 6035 24852 19.54 30887 42 5994 23514 20.31 29508 43 5875 21315 21.61 27190 44 5739 20290 22.05 26029 45 6476 28758 18.38 35234 46 5512 19998 21.61 25510 47 5611 19629 22.23 25240 48 5628 20524 21.52 26152 49 5402 21262 20.26 26664 50 5254 19484 21.24 24738 51 5182 18064 22.29 23246 52 5301 23862 18.18 29163 53 5340 24960 17.62 30300 54 5174 20368 20.26 25542 55 5334 19650 21.35 24984 56 4911 19400 20.20 24311 57 5347 18553 22.37 23900 58 4866 18099 21.19 22965 59 4763 18865 20.16 23628 60 4921 18692 20.84 23613 61 4332 16635 20.66 20967 62 4427 15413 22.31 19840 63 4558 15467 22.76 20025 64 4478 15493 22.42 19971 65 4352 14015 23.69 18367 66 4552 15956 22.20 20508 67 4302 17124 20.08 21426 68 4509 21553 17.30 26062 69 4148 15176 21.47 19324 70 4040 15801 20.36 19841 71 4095 13657 23.07 17752 72 3995 13224 23.20 17219 73 3903 13561 22.35 17464 74 3625 13873 20.72 17498 75 3740 14139 20.92 17879 76 3753 12758 22.73 16511 77 3756 12507 23.10 16263 78 3636 13988 20.63 17624 79 3453 12244 22.00 15697 80 3342 11968 21.83 15310 81 3545 12392 22.24 15937 82 3402 12654 21.19 16056 83 3379 11550 22.63 14929 84 3643 12247 22.93 15890 85 3388 11893 22.17 15281 86 3397 11910 22.19 15307 87 3303 11269 22.67 14572 88 3326 11094 23.07 14420 89 3350 11135 23.13 14485 90 3284 11448 22.29 14732 91 3231 10532 23.48 13763 92 3071 10406 22.79 13477 93 3090 10688 22.43 13778 94 3325 10563 23.94 13888 95 3034 10234 22.87 13268 96 2949 10116 22.57 13065 97 3101 10432 22.91 13533 98 2819 9577 22.74 12396 99 2600 0 100.00 2600 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10207 56466 15.31 66673 2 11271 60611 15.68 71882 3 10112 57066 15.05 67178 4 11431 61220 15.73 72651 5 700 108100 0.64 108800 6 589 145382 0.40 145971 7 333 71358 0.46 71691 8 379 75633 0.50 76012 9 317 71211 0.44 71528 10 353 71234 0.49 71587 11 438 76721 0.57 77159 12 361 65757 0.55 66118 13 374 78199 0.48 78573 14 329 65117 0.50 65446 15 319 61911 0.51 62230 16 328 57276 0.57 57604 17 485 68412 0.70 68897 18 335 53053 0.63 53388 19 349 54042 0.64 54391 20 306 54095 0.56 54401 21 354 55520 0.63 55874 22 345 61166 0.56 61511 23 303 52798 0.57 53101 24 305 49817 0.61 50122 25 267 50620 0.52 50887 26 296 54786 0.54 55082 27 313 49155 0.63 49468 28 307 50502 0.60 50809 29 315 55265 0.57 55580 30 304 49584 0.61 49888 31 300 47986 0.62 48286 32 314 49088 0.64 49402 33 305 60177 0.50 60482 34 284 46964 0.60 47248 35 293 48263 0.60 48556 36 278 53051 0.52 53329 37 302 51728 0.58 52030 38 283 46420 0.61 46703 39 264 48548 0.54 48812 40 314 47562 0.66 47876 41 251 40839 0.61 41090 42 225 37866 0.59 38091 43 260 40132 0.64 40392 44 221 41224 0.53 41445 45 228 36793 0.62 37021 46 242 37947 0.63 38189 47 244 38078 0.64 38322 48 221 36711 0.60 36932 49 234 36990 0.63 37224 50 230 38781 0.59 39011 51 196 36578 0.53 36774 52 235 35382 0.66 35617 53 211 37399 0.56 37610 54 229 35343 0.64 35572 55 239 34966 0.68 35205 56 204 34454 0.59 34658 57 216 33230 0.65 33446 58 216 34489 0.62 34705 59 184 35472 0.52 35656 60 211 39708 0.53 39919 61 218 34576 0.63 34794 62 200 32884 0.60 33084 63 247 33480 0.73 33727 64 177 30158 0.58 30335 65 187 31353 0.59 31540 66 191 28787 0.66 28978 67 185 31156 0.59 31341 68 204 30048 0.67 30252 69 171 30400 0.56 30571 70 173 30065 0.57 30238 71 192 30969 0.62 31161 72 170 28299 0.60 28469 73 170 27881 0.61 28051 74 142 28513 0.50 28655 75 168 27092 0.62 27260 76 147 26091 0.56 26238 77 146 27924 0.52 28070 78 157 26469 0.59 26626 79 173 26273 0.65 26446 80 150 25348 0.59 25498 81 157 25477 0.61 25634 82 136 24386 0.55 24522 83 145 25528 0.56 25673 84 166 24139 0.68 24305 85 145 25309 0.57 25454 86 131 23011 0.57 23142 87 159 23375 0.68 23534 88 163 23160 0.70 23323 89 167 23958 0.69 24125 90 172 24063 0.71 24235 91 148 24423 0.60 24571 92 119 23263 0.51 23382 93 154 21016 0.73 21170 94 150 21159 0.70 21309 95 137 21459 0.63 21596 96 120 21221 0.56 21341 97 133 20871 0.63 21004 98 94 19715 0.47 19809 99 92 0 100.00 92 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14350 75996 15.88 90346 2 11117 62554 15.09 73671 3 11697 65180 15.22 76877 4 11961 63920 15.76 75881 5 1152 122135 0.93 123287 6 1127 171194 0.65 172321 7 1331 229344 0.58 230675 8 1329 228489 0.58 229818 9 1415 215825 0.65 217240 10 1355 214384 0.63 215739 11 1329 211794 0.62 213123 12 1413 193688 0.72 195101 13 1329 204233 0.65 205562 14 1437 205690 0.69 207127 15 1297 201072 0.64 202369 16 1278 195465 0.65 196743 17 1288 193410 0.66 194698 18 1326 206404 0.64 207730 19 1277 189898 0.67 191175 20 1318 208691 0.63 210009 21 1253 185761 0.67 187014 22 1317 187129 0.70 188446 23 1184 178941 0.66 180125 24 1133 174056 0.65 175189 25 1160 170760 0.67 171920 26 1161 168206 0.69 169367 27 1219 181996 0.67 183215 28 1140 172814 0.66 173954 29 1137 169545 0.67 170682 30 1121 163074 0.68 164195 31 1079 162742 0.66 163821 32 1104 166317 0.66 167421 33 1033 156517 0.66 157550 34 1082 154632 0.69 155714 35 1168 156530 0.74 157698 36 1107 158932 0.69 160039 37 1204 153335 0.78 154539 38 1167 166001 0.70 167168 39 1062 153961 0.69 155023 40 1081 156942 0.68 158023 41 1049 154562 0.67 155611 42 1062 150600 0.70 151662 43 1048 145639 0.71 146687 44 1005 144703 0.69 145708 45 1019 146829 0.69 147848 46 974 147791 0.65 148765 47 972 147348 0.66 148320 48 981 140720 0.69 141701 49 924 136375 0.67 137299 50 894 133679 0.66 134573 51 922 129649 0.71 130571 52 884 124487 0.71 125371 53 850 126335 0.67 127185 54 858 123575 0.69 124433 55 912 129401 0.70 130313 56 844 123887 0.68 124731 57 813 124389 0.65 125202 58 841 120496 0.69 121337 59 833 118760 0.70 119593 60 859 122584 0.70 123443 61 773 120947 0.64 121720 62 806 114052 0.70 114858 63 773 114970 0.67 115743 64 744 111262 0.66 112006 65 781 112506 0.69 113287 66 773 111114 0.69 111887 67 713 107269 0.66 107982 68 770 108771 0.70 109541 69 737 107485 0.68 108222 70 748 106132 0.70 106880 71 755 107342 0.70 108097 72 703 103293 0.68 103996 73 711 100727 0.70 101438 74 640 99512 0.64 100152 75 709 100000 0.70 100709 76 670 97064 0.69 97734 77 674 95202 0.70 95876 78 684 97414 0.70 98098 79 635 97973 0.64 98608 80 655 94561 0.69 95216 81 628 94223 0.66 94851 82 632 92790 0.68 93422 83 646 92186 0.70 92832 84 595 91772 0.64 92367 85 611 91025 0.67 91636 86 607 90233 0.67 90840 87 636 86820 0.73 87456 88 590 86680 0.68 87270 89 588 85037 0.69 85625 90 644 83920 0.76 84564 91 622 83821 0.74 84443 92 565 86425 0.65 86990 93 583 82255 0.70 82838 94 574 79131 0.72 79705 95 569 78415 0.72 78984 96 554 77521 0.71 78075 97 601 77037 0.77 77638 98 465 73043 0.63 73508 99 343 0 100.00 343