CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19082 38825 32.95 57907 2 17464 40930 29.91 58394 3 16015 34421 31.75 50436 4 16034 24930 39.14 40964 5 15023 21872 40.72 36895 6 14738 18930 43.77 33668 7 16473 18184 47.53 34657 8 7473 21428 25.86 28901 9 6978 21081 24.87 28059 10 6890 18716 26.91 25606 11 7187 20320 26.13 27507 12 6911 19404 26.26 26315 13 6637 20307 24.63 26944 14 6255 20537 23.35 26792 15 6060 20530 22.79 26590 16 5710 19963 22.24 25673 17 5284 19794 21.07 25078 18 5391 20571 20.76 25962 19 5325 20210 20.85 25535 20 5419 19656 21.61 25075 21 5476 19625 21.82 25101 22 5382 19060 22.02 24442 23 5314 19091 21.77 24405 24 5325 19062 21.84 24387 25 4988 19152 20.66 24140 26 5172 24128 17.65 29300 27 5167 20608 20.05 25775 28 5317 21204 20.05 26521 29 5198 21037 19.81 26235 30 5102 19805 20.48 24907 31 5174 19413 21.04 24587 32 5245 18916 21.71 24161 33 5264 19243 21.48 24507 34 5267 19696 21.10 24963 35 5003 19645 20.30 24648 36 5073 19654 20.52 24727 37 4949 19328 20.39 24277 38 4906 18868 20.64 23774 39 4806 19107 20.10 23913 40 5211 18596 21.89 23807 41 4964 18271 21.36 23235 42 5200 19253 21.27 24453 43 4979 18736 21.00 23715 44 5007 18166 21.61 23173 45 5036 17929 21.93 22965 46 5286 19012 21.75 24298 47 5213 18337 22.14 23550 48 5016 18833 21.03 23849 49 5142 18239 21.99 23381 50 5013 18745 21.10 23758 51 4877 18226 21.11 23103 52 5176 18788 21.60 23964 53 4932 17848 21.65 22780 54 4777 17461 21.48 22238 55 4926 18069 21.42 22995 56 4739 17125 21.67 21864 57 5016 17510 22.27 22526 58 5021 17768 22.03 22789 59 4862 17684 21.56 22546 60 4875 17957 21.35 22832 61 4899 18482 20.95 23381 62 4731 18545 20.33 23276 63 4772 17823 21.12 22595 64 4727 17826 20.96 22553 65 4864 18203 21.09 23067 66 4932 17456 22.03 22388 67 4820 17385 21.71 22205 68 4511 16959 21.01 21470 69 4665 16706 21.83 21371 70 4596 17135 21.15 21731 71 4568 16473 21.71 21041 72 4449 16788 20.95 21237 73 4443 16609 21.10 21052 74 4390 16296 21.22 20686 75 4412 16606 20.99 21018 76 4395 16352 21.18 20747 77 4388 15855 21.68 20243 78 4406 16140 21.44 20546 79 4396 21057 17.27 25453 80 4184 16524 20.20 20708 81 4173 17120 19.60 21293 82 4205 16014 20.80 20219 83 4325 15874 21.41 20199 84 4216 15466 21.42 19682 85 4157 15266 21.40 19423 86 4124 16465 20.03 20589 87 3998 16137 19.86 20135 88 4074 16294 20.00 20368 89 3962 14910 20.99 18872 90 3854 15217 20.21 19071 91 3790 15986 19.16 19776 92 3683 15180 19.52 18863 93 3874 14839 20.70 18713 94 3848 14725 20.72 18573 95 3837 14940 20.43 18777 96 3907 14855 20.82 18762 97 3782 20399 15.64 24181 98 3430 14359 19.28 17789 99 2771 11849 18.95 14620 100 3633 13264 21.50 16897 101 3112 13240 19.03 16352 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31247 36456 46.15 67703 2 17745 31650 35.92 49395 3 6484 30327 17.61 36811 4 2649 33489 7.33 36138 5 1629 31423 4.93 33052 6 1285 29631 4.16 30916 7 1013 38404 2.57 39417 8 439 40188 1.08 40627 9 417 38484 1.07 38901 10 360 36188 0.99 36548 11 335 36400 0.91 36735 12 380 36761 1.02 37141 13 289 34849 0.82 35138 14 290 34673 0.83 34963 15 277 34899 0.79 35176 16 270 35289 0.76 35559 17 233 34423 0.67 34656 18 226 33938 0.66 34164 19 226 35478 0.63 35704 20 246 37053 0.66 37299 21 235 36990 0.63 37225 22 249 36439 0.68 36688 23 236 36197 0.65 36433 24 262 36290 0.72 36552 25 233 34792 0.67 35025 26 252 35900 0.70 36152 27 241 36391 0.66 36632 28 232 36165 0.64 36397 29 326 48088 0.67 48414 30 251 38847 0.64 39098 31 256 39711 0.64 39967 32 249 36738 0.67 36987 33 235 36523 0.64 36758 34 212 36901 0.57 37113 35 251 36114 0.69 36365 36 250 36742 0.68 36992 37 235 34854 0.67 35089 38 249 35561 0.70 35810 39 255 36257 0.70 36512 40 262 35344 0.74 35606 41 251 36979 0.67 37230 42 228 35716 0.63 35944 43 238 35289 0.67 35527 44 247 36046 0.68 36293 45 251 35635 0.70 35886 46 274 36031 0.75 36305 47 243 34993 0.69 35236 48 301 47567 0.63 47868 49 242 38015 0.63 38257 50 284 38176 0.74 38460 51 270 37217 0.72 37487 52 286 36179 0.78 36465 53 322 45433 0.70 45755 54 290 38482 0.75 38772 55 255 37289 0.68 37544 56 279 35294 0.78 35573 57 254 35531 0.71 35785 58 332 47428 0.70 47760 59 346 38886 0.88 39232 60 331 38716 0.85 39047 61 298 35955 0.82 36253 62 311 34897 0.88 35208 63 270 35943 0.75 36213 64 276 35785 0.77 36061 65 306 35231 0.86 35537 66 322 34136 0.93 34458 67 273 33031 0.82 33304 68 346 44495 0.77 44841 69 344 35801 0.95 36145 70 336 35090 0.95 35426 71 282 33764 0.83 34046 72 300 33130 0.90 33430 73 297 32555 0.90 32852 74 310 33042 0.93 33352 75 304 32703 0.92 33007 76 299 31323 0.95 31622 77 289 31500 0.91 31789 78 320 32580 0.97 32900 79 296 31243 0.94 31539 80 295 33541 0.87 33836 81 277 31487 0.87 31764 82 280 30755 0.90 31035 83 305 31596 0.96 31901 84 284 31506 0.89 31790 85 300 31326 0.95 31626 86 300 31017 0.96 31317 87 278 30667 0.90 30945 88 279 30004 0.92 30283 89 265 29400 0.89 29665 90 306 29786 1.02 30092 91 289 29282 0.98 29571 92 339 29577 1.13 29916 93 321 29108 1.09 29429 94 319 28496 1.11 28815 95 322 28317 1.12 28639 96 320 28055 1.13 28375 97 314 25547 1.21 25861 98 298 23541 1.25 23839 99 191 15104 1.25 15295 100 191 15442 1.22 15633 101 417 25614 1.60 26031 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 24980 36995 40.31 61975 2 10884 38008 22.26 48892 3 4761 51198 8.51 55959 4 3750 56999 6.17 60749 5 3269 70360 4.44 73629 6 2615 77714 3.26 80329 7 2342 101327 2.26 103669 8 1316 117901 1.10 119217 9 1066 101318 1.04 102384 10 978 98681 0.98 99659 11 1082 98036 1.09 99118 12 903 98229 0.91 99132 13 1021 98690 1.02 99711 14 1016 101167 0.99 102183 15 950 104408 0.90 105358 16 989 106458 0.92 107447 17 1035 120816 0.85 121851 18 904 114204 0.79 115108 19 912 115228 0.79 116140 20 967 115989 0.83 116956 21 914 117027 0.77 117941 22 986 116405 0.84 117391 23 1011 118421 0.85 119432 24 982 130654 0.75 131636 25 1005 121778 0.82 122783 26 1076 129479 0.82 130555 27 1025 125519 0.81 126544 28 964 123838 0.77 124802 29 1027 121029 0.84 122056 30 956 119951 0.79 120907 31 943 117219 0.80 118162 32 982 117663 0.83 118645 33 910 116551 0.77 117461 34 1007 115945 0.86 116952 35 1039 117139 0.88 118178 36 960 130650 0.73 131610 37 961 122666 0.78 123627 38 1052 122677 0.85 123729 39 967 131903 0.73 132870 40 1012 120448 0.83 121460 41 1001 119440 0.83 120441 42 982 129682 0.75 130664 43 1153 120356 0.95 121509 44 1211 133135 0.90 134346 45 1021 132033 0.77 133054 46 1102 134121 0.81 135223 47 1119 124929 0.89 126048 48 1018 122834 0.82 123852 49 1032 118939 0.86 119971 50 1069 117429 0.90 118498 51 935 115152 0.81 116087 52 981 125545 0.78 126526 53 1067 116859 0.90 117926 54 978 115769 0.84 116747 55 1018 114577 0.88 115595 56 1143 126029 0.90 127172 57 950 131271 0.72 132221 58 1080 120924 0.89 122004 59 1092 118821 0.91 119913 60 972 113435 0.85 114407 61 995 113520 0.87 114515 62 987 112104 0.87 113091 63 938 110256 0.84 111194 64 1008 121513 0.82 122521 65 1038 112285 0.92 113323 66 978 120369 0.81 121347 67 998 122659 0.81 123657 68 1075 113054 0.94 114129 69 925 111489 0.82 112414 70 936 108721 0.85 109657 71 1026 108532 0.94 109558 72 958 107124 0.89 108082 73 1027 106118 0.96 107145 74 996 106252 0.93 107248 75 891 106363 0.83 107254 76 991 106184 0.92 107175 77 981 104190 0.93 105171 78 909 104911 0.86 105820 79 888 104117 0.85 105005 80 933 103457 0.89 104390 81 882 101576 0.86 102458 82 920 99876 0.91 100796 83 1050 101611 1.02 102661 84 925 111209 0.82 112134 85 866 100700 0.85 101566 86 966 108561 0.88 109527 87 806 98110 0.81 98916 88 836 98164 0.84 99000 89 889 98107 0.90 98996 90 895 95504 0.93 96399 91 856 94625 0.90 95481 92 898 94122 0.95 95020 93 865 93108 0.92 93973 94 844 91610 0.91 92454 95 961 91224 1.04 92185 96 870 88079 0.98 88949 97 892 87422 1.01 88314 98 836 81244 1.02 82080 99 537 57029 0.93 57566 100 531 50523 1.04 51054 101 887 88063 1.00 88950 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11537 17186 40.17 28723 2 10528 16278 39.27 26806 3 11325 18099 38.49 29424 4 10908 20089 35.19 30997 5 4668 24998 15.74 29666 6 2566 12644 16.87 15210 7 2392 13867 14.71 16259 8 2410 13981 14.70 16391 9 2236 12862 14.81 15098 10 2409 13320 15.32 15729 11 2634 14114 15.73 16748 12 2600 15848 14.09 18448 13 2578 11885 17.82 14463 14 2855 13164 17.82 16019 15 2712 11452 19.15 14164 16 2586 11169 18.80 13755 17 3113 12820 19.54 15933 18 3025 11372 21.01 14397 19 2852 12207 18.94 15059 20 2754 11001 20.02 13755 21 2776 10337 21.17 13113 22 2836 10794 20.81 13630 23 2688 9918 21.32 12606 24 2656 10809 19.73 13465 25 3051 11088 21.58 14139 26 2555 11144 18.65 13699 27 3140 10344 23.29 13484 28 2564 9297 21.62 11861 29 2687 10113 20.99 12800 30 2528 12724 16.57 15252 31 2496 9833 20.24 12329 32 2412 9063 21.02 11475 33 2584 8939 22.42 11523 34 2701 10021 21.23 12722 35 3009 10139 22.89 13148 36 2628 10053 20.72 12681 37 2688 8812 23.37 11500 38 2468 9128 21.28 11596 39 2400 9000 21.05 11400 40 2594 8999 22.38 11593 41 2433 10039 19.51 12472 42 2471 9527 20.60 11998 43 2359 8384 21.96 10743 44 2311 8113 22.17 10424 45 2620 11609 18.41 14229 46 2140 8082 20.94 10222 47 2286 7865 22.52 10151 48 2205 8115 21.37 10320 49 2214 8603 20.47 10817 50 2111 7800 21.30 9911 51 2041 7183 22.13 9224 52 2139 9592 18.23 11731 53 2115 10072 17.35 12187 54 2035 8282 19.72 10317 55 2216 8034 21.62 10250 56 2047 7897 20.59 9944 57 2194 7460 22.73 9654 58 1980 7244 21.47 9224 59 1954 7581 20.49 9535 60 1965 7636 20.47 9601 61 1727 6674 20.56 8401 62 1779 6208 22.27 7987 63 1801 6273 22.31 8074 64 1800 6281 22.27 8081 65 1733 5522 23.89 7255 66 1746 6493 21.19 8239 67 1752 6838 20.40 8590 68 1859 8629 17.73 10488 69 1638 6109 21.14 7747 70 1637 6436 20.28 8073 71 1676 5529 23.26 7205 72 1638 5301 23.61 6939 73 1536 5534 21.73 7070 74 1448 5575 20.62 7023 75 1422 5626 20.18 7048 76 1483 5135 22.41 6618 77 1457 5123 22.14 6580 78 1463 5606 20.70 7069 79 1382 4955 21.81 6337 80 1354 4858 21.80 6212 81 1420 4982 22.18 6402 82 1376 5083 21.30 6459 83 1348 4747 22.12 6095 84 1482 5005 22.85 6487 85 1377 4747 22.49 6124 86 1342 4845 21.69 6187 87 1367 4655 22.70 6022 88 1384 4419 23.85 5803 89 1369 4453 23.51 5822 90 1368 4725 22.45 6093 91 1252 4220 22.88 5472 92 1240 4192 22.83 5432 93 1306 4310 23.25 5616 94 1336 4217 24.06 5553 95 1232 4161 22.84 5393 96 1171 4082 22.29 5253 97 1248 4193 22.94 5441 98 1124 3881 22.46 5005 99 1035 0 100.00 1035 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4063 22321 15.40 26384 2 4504 24409 15.58 28913 3 4100 22830 15.22 26930 4 4639 24421 15.96 29060 5 301 43562 0.69 43863 6 245 58260 0.42 58505 7 132 28479 0.46 28611 8 179 30165 0.59 30344 9 128 28618 0.45 28746 10 136 28599 0.47 28735 11 188 30840 0.61 31028 12 135 26477 0.51 26612 13 157 31555 0.50 31712 14 122 26125 0.46 26247 15 153 24893 0.61 25046 16 131 23009 0.57 23140 17 200 27380 0.73 27580 18 136 21451 0.63 21587 19 139 21564 0.64 21703 20 115 21767 0.53 21882 21 141 22242 0.63 22383 22 148 24497 0.60 24645 23 121 21207 0.57 21328 24 128 20045 0.63 20173 25 112 20190 0.55 20302 26 115 21928 0.52 22043 27 129 19851 0.65 19980 28 125 20132 0.62 20257 29 108 22099 0.49 22207 30 129 19794 0.65 19923 31 122 19251 0.63 19373 32 123 19582 0.62 19705 33 106 24162 0.44 24268 34 104 18799 0.55 18903 35 125 19336 0.64 19461 36 109 21302 0.51 21411 37 122 20811 0.58 20933 38 118 18728 0.63 18846 39 99 19551 0.50 19650 40 134 18862 0.71 18996 41 108 16534 0.65 16642 42 94 15224 0.61 15318 43 112 16106 0.69 16218 44 82 16512 0.49 16594 45 83 14825 0.56 14908 46 98 15286 0.64 15384 47 103 15165 0.67 15268 48 89 14658 0.60 14747 49 91 14867 0.61 14958 50 95 15561 0.61 15656 51 77 14670 0.52 14747 52 105 14328 0.73 14433 53 94 14886 0.63 14980 54 91 14233 0.64 14324 55 95 14133 0.67 14228 56 81 13902 0.58 13983 57 83 13390 0.62 13473 58 95 13824 0.68 13919 59 78 14275 0.54 14353 60 90 16082 0.56 16172 61 85 13949 0.61 14034 62 67 13295 0.50 13362 63 103 13597 0.75 13700 64 67 12325 0.54 12392 65 74 12620 0.58 12694 66 74 11613 0.63 11687 67 70 12437 0.56 12507 68 76 11913 0.63 11989 69 65 12422 0.52 12487 70 74 12226 0.60 12300 71 73 12465 0.58 12538 72 72 11417 0.63 11489 73 68 11273 0.60 11341 74 65 11466 0.56 11531 75 65 10956 0.59 11021 76 61 10545 0.58 10606 77 52 11375 0.46 11427 78 60 10620 0.56 10680 79 64 10493 0.61 10557 80 55 10094 0.54 10149 81 56 10337 0.54 10393 82 51 9910 0.51 9961 83 57 10322 0.55 10379 84 59 9823 0.60 9882 85 62 10279 0.60 10341 86 50 9284 0.54 9334 87 55 9564 0.57 9619 88 71 9365 0.75 9436 89 59 9656 0.61 9715 90 68 9681 0.70 9749 91 69 9939 0.69 10008 92 49 9367 0.52 9416 93 68 8539 0.79 8607 94 61 8548 0.71 8609 95 58 8695 0.66 8753 96 45 8511 0.53 8556 97 56 8491 0.66 8547 98 41 7923 0.51 7964 99 36 0 100.00 36 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5702 30498 15.75 36200 2 4512 25293 15.14 29805 3 4618 26154 15.01 30772 4 4826 25854 15.73 30680 5 457 49107 0.92 49564 6 444 69034 0.64 69478 7 537 92122 0.58 92659 8 559 91708 0.61 92267 9 557 86459 0.64 87016 10 558 85994 0.64 86552 11 529 84509 0.62 85038 12 591 78389 0.75 78980 13 566 81842 0.69 82408 14 584 82790 0.70 83374 15 516 80837 0.63 81353 16 520 78717 0.66 79237 17 547 77855 0.70 78402 18 541 82887 0.65 83428 19 525 76158 0.68 76683 20 550 83979 0.65 84529 21 501 74613 0.67 75114 22 503 75291 0.66 75794 23 483 72165 0.66 72648 24 484 69808 0.69 70292 25 501 68487 0.73 68988 26 463 67495 0.68 67958 27 466 73309 0.63 73775 28 443 69042 0.64 69485 29 473 68158 0.69 68631 30 455 65842 0.69 66297 31 458 65543 0.69 66001 32 438 67052 0.65 67490 33 404 63115 0.64 63519 34 449 62125 0.72 62574 35 479 63451 0.75 63930 36 411 63935 0.64 64346 37 477 61596 0.77 62073 38 467 67028 0.69 67495 39 440 62206 0.70 62646 40 454 63206 0.71 63660 41 450 62290 0.72 62740 42 413 60618 0.68 61031 43 426 58164 0.73 58590 44 409 58239 0.70 58648 45 405 59223 0.68 59628 46 403 59361 0.67 59764 47 388 59448 0.65 59836 48 383 56494 0.67 56877 49 391 55167 0.70 55558 50 357 54087 0.66 54444 51 337 52213 0.64 52550 52 381 50468 0.75 50849 53 326 50793 0.64 51119 54 347 49597 0.69 49944 55 374 52206 0.71 52580 56 363 49851 0.72 50214 57 317 50058 0.63 50375 58 356 48798 0.72 49154 59 360 47634 0.75 47994 60 337 49256 0.68 49593 61 342 48897 0.69 49239 62 350 45964 0.76 46314 63 296 46394 0.63 46690 64 316 44885 0.70 45201 65 278 45456 0.61 45734 66 309 45266 0.68 45575 67 276 43462 0.63 43738 68 292 43924 0.66 44216 69 291 43252 0.67 43543 70 326 42791 0.76 43117 71 300 43503 0.68 43803 72 291 41550 0.70 41841 73 284 40567 0.70 40851 74 271 40057 0.67 40328 75 305 40314 0.75 40619 76 269 38940 0.69 39209 77 279 38527 0.72 38806 78 273 39482 0.69 39755 79 252 39506 0.63 39758 80 275 38031 0.72 38306 81 264 37923 0.69 38187 82 263 37445 0.70 37708 83 260 37131 0.70 37391 84 245 36864 0.66 37109 85 277 36606 0.75 36883 86 243 36447 0.66 36690 87 259 35089 0.73 35348 88 248 34856 0.71 35104 89 233 34198 0.68 34431 90 263 33855 0.77 34118 91 258 33668 0.76 33926 92 250 34838 0.71 35088 93 229 33454 0.68 33683 94 243 31813 0.76 32056 95 246 31786 0.77 32032 96 217 31381 0.69 31598 97 257 31353 0.81 31610 98 201 29641 0.67 29842 99 148 0 100.00 148