/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 00:07 on 2019-02-24
Alignment
Sequence pairs analysed in total
2000000
Paired-end alignments with a unique best hit
1052373
Pairs without alignments under any condition
687821
Pairs that did not map uniquely
259806
Genomic sequence context not extractable (edges of chromosomes)
781
Cytosine Methylation
Total C's analysed
33880338
Methylated C's in CpG context
1069959
Methylated C's in CHG context
150462
Methylated C's in CHH context
265046
Methylated C's in Unknown context
4610
Unmethylated C's in CpG context
3718021
Unmethylated C's in CHG context
7022295
Unmethylated C's in CHH context
21654555
Unmethylated C's in Unknown context
70736
Percentage methylation (CpG context)
22.3%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
530687
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
520905
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions