CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 95804 193491 33.12 289295 2 86340 204152 29.72 290492 3 79795 172051 31.68 251846 4 80489 124286 39.31 204775 5 75212 109329 40.76 184541 6 74677 93739 44.34 168416 7 80992 91642 46.92 172634 8 38086 106810 26.29 144896 9 34674 104632 24.89 139306 10 35069 94226 27.12 129295 11 36363 100913 26.49 137276 12 35064 97205 26.51 132269 13 33375 100646 24.90 134021 14 31545 103590 23.34 135135 15 30199 101576 22.92 131775 16 28011 100331 21.83 128342 17 26459 98480 21.18 124939 18 27342 102871 21.00 130213 19 26866 101292 20.96 128158 20 27031 98177 21.59 125208 21 27746 98022 22.06 125768 22 27024 95949 21.98 122973 23 26573 95894 21.70 122467 24 26332 94791 21.74 121123 25 25284 95884 20.87 121168 26 25930 121541 17.58 147471 27 25736 104040 19.83 129776 28 26612 106018 20.06 132630 29 26148 104138 20.07 130286 30 25409 98761 20.46 124170 31 26107 96783 21.24 122890 32 25519 94274 21.30 119793 33 25944 97375 21.04 123319 34 26532 96685 21.53 123217 35 25582 98126 20.68 123708 36 25239 98859 20.34 124098 37 24635 96009 20.42 120644 38 24688 94909 20.64 119597 39 25077 95950 20.72 121027 40 25222 92828 21.37 118050 41 24838 91591 21.33 116429 42 25457 95772 21.00 121229 43 25362 94277 21.20 119639 44 25185 90194 21.83 115379 45 25491 89969 22.08 115460 46 26270 95194 21.63 121464 47 25352 91642 21.67 116994 48 25124 93916 21.11 119040 49 25789 91022 22.08 116811 50 25186 92808 21.35 117994 51 25209 90855 21.72 116064 52 25340 93920 21.25 119260 53 24563 89560 21.52 114123 54 24209 87270 21.72 111479 55 24612 91618 21.18 116230 56 24114 84956 22.11 109070 57 24593 86619 22.11 111212 58 25011 87932 22.14 112943 59 24644 88391 21.80 113035 60 23855 89913 20.97 113768 61 24669 92714 21.02 117383 62 23991 92969 20.51 116960 63 23841 89684 21.00 113525 64 23558 88760 20.97 112318 65 24290 90664 21.13 114954 66 24388 87887 21.72 112275 67 23955 85469 21.89 109424 68 23124 84133 21.56 107257 69 23251 84292 21.62 107543 70 22846 85318 21.12 108164 71 22603 81893 21.63 104496 72 22274 83640 21.03 105914 73 22332 82506 21.30 104838 74 22412 81405 21.59 103817 75 21577 82648 20.70 104225 76 21806 82324 20.94 104130 77 22003 79376 21.70 101379 78 22007 80300 21.51 102307 79 21432 105700 16.86 127132 80 21325 83284 20.39 104609 81 21179 85457 19.86 106636 82 21015 79383 20.93 100398 83 20953 78952 20.97 99905 84 20968 77360 21.32 98328 85 20929 76480 21.49 97409 86 20302 82098 19.83 102400 87 20114 80556 19.98 100670 88 20571 81625 20.13 102196 89 19621 75205 20.69 94826 90 19325 76828 20.10 96153 91 19425 79548 19.63 98973 92 18925 76136 19.91 95061 93 18983 73705 20.48 92688 94 19559 72525 21.24 92084 95 18863 74659 20.17 93522 96 19799 73802 21.15 93601 97 19137 101501 15.86 120638 98 17362 72017 19.43 89379 99 13713 57548 19.24 71261 100 17532 66624 20.83 84156 101 15813 65461 19.46 81274 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 154721 181539 46.01 336260 2 88501 157168 36.02 245669 3 32111 151268 17.51 183379 4 13995 167724 7.70 181719 5 8165 155476 4.99 163641 6 6628 148429 4.27 155057 7 5093 190848 2.60 195941 8 2213 201049 1.09 203262 9 2004 193315 1.03 195319 10 1823 181720 0.99 183543 11 1847 180901 1.01 182748 12 1893 183338 1.02 185231 13 1555 174748 0.88 176303 14 1472 172458 0.85 173930 15 1395 174375 0.79 175770 16 1235 176887 0.69 178122 17 1190 171529 0.69 172719 18 1152 169731 0.67 170883 19 1174 177215 0.66 178389 20 1222 185842 0.65 187064 21 1195 185182 0.64 186377 22 1249 182647 0.68 183896 23 1237 179940 0.68 181177 24 1205 181043 0.66 182248 25 1181 173580 0.68 174761 26 1265 179824 0.70 181089 27 1206 181205 0.66 182411 28 1215 180548 0.67 181763 29 1534 240733 0.63 242267 30 1265 194522 0.65 195787 31 1271 197456 0.64 198727 32 1246 183918 0.67 185164 33 1174 180721 0.65 181895 34 1196 183187 0.65 184383 35 1199 181430 0.66 182629 36 1252 184271 0.67 185523 37 1208 173616 0.69 174824 38 1248 179301 0.69 180549 39 1227 181074 0.67 182301 40 1210 177406 0.68 178616 41 1249 184980 0.67 186229 42 1253 178880 0.70 180133 43 1223 176253 0.69 177476 44 1273 180383 0.70 181656 45 1234 179193 0.68 180427 46 1338 180444 0.74 181782 47 1288 175955 0.73 177243 48 1441 238720 0.60 240161 49 1341 189960 0.70 191301 50 1450 188634 0.76 190084 51 1458 186609 0.78 188067 52 1405 181326 0.77 182731 53 1657 228708 0.72 230365 54 1428 192802 0.74 194230 55 1394 184821 0.75 186215 56 1388 176962 0.78 178350 57 1427 177358 0.80 178785 58 2297 235933 0.96 238230 59 1641 193703 0.84 195344 60 1531 191307 0.79 192838 61 1544 178952 0.86 180496 62 1548 175446 0.87 176994 63 1488 178458 0.83 179946 64 1463 179046 0.81 180509 65 1541 176633 0.86 178174 66 1530 169652 0.89 171182 67 1500 165610 0.90 167110 68 1874 221836 0.84 223710 69 1638 179988 0.90 181626 70 1651 176307 0.93 177958 71 1422 167805 0.84 169227 72 1506 165079 0.90 166585 73 1512 163884 0.91 165396 74 1577 165731 0.94 167308 75 1529 163035 0.93 164564 76 1345 156490 0.85 157835 77 1404 157732 0.88 159136 78 1542 161699 0.94 163241 79 1546 156097 0.98 157643 80 1563 166393 0.93 167956 81 1449 157975 0.91 159424 82 1473 154306 0.95 155779 83 1460 158524 0.91 159984 84 1429 157634 0.90 159063 85 1582 157930 0.99 159512 86 1475 154784 0.94 156259 87 1499 154826 0.96 156325 88 1536 147956 1.03 149492 89 1535 147164 1.03 148699 90 1489 149064 0.99 150553 91 1475 144768 1.01 146243 92 1631 147584 1.09 149215 93 1616 144669 1.10 146285 94 1603 143668 1.10 145271 95 1587 141454 1.11 143041 96 1640 141244 1.15 142884 97 1509 128297 1.16 129806 98 1364 116465 1.16 117829 99 900 75429 1.18 76329 100 940 77085 1.20 78025 101 2215 127269 1.71 129484 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 124268 184521 40.24 308789 2 54419 191139 22.16 245558 3 23764 256122 8.49 279886 4 18871 283635 6.24 302506 5 16095 351681 4.38 367776 6 12944 388364 3.23 401308 7 11556 507236 2.23 518792 8 6535 591756 1.09 598291 9 5175 507885 1.01 513060 10 4914 493746 0.99 498660 11 5221 490625 1.05 495846 12 4656 490860 0.94 495516 13 5008 495429 1.00 500437 14 4993 505639 0.98 510632 15 4668 523246 0.88 527914 16 4486 532811 0.83 537297 17 5202 603478 0.85 608680 18 4622 572623 0.80 577245 19 4497 575360 0.78 579857 20 4782 581461 0.82 586243 21 4565 584008 0.78 588573 22 4792 581399 0.82 586191 23 4917 591946 0.82 596863 24 4885 654475 0.74 659360 25 4952 610070 0.81 615022 26 5289 647739 0.81 653028 27 4947 627718 0.78 632665 28 4760 619033 0.76 623793 29 5110 606935 0.83 612045 30 4727 599384 0.78 604111 31 4519 586006 0.77 590525 32 5045 588227 0.85 593272 33 4558 583817 0.77 588375 34 4964 582480 0.85 587444 35 5005 586837 0.85 591842 36 4854 653111 0.74 657965 37 4842 613745 0.78 618587 38 5063 613801 0.82 618864 39 4850 659967 0.73 664817 40 4834 604300 0.79 609134 41 5031 598347 0.83 603378 42 4973 650146 0.76 655119 43 5247 601197 0.87 606444 44 5879 662951 0.88 668830 45 5307 658493 0.80 663800 46 5401 674533 0.79 679934 47 5334 624983 0.85 630317 48 5059 615498 0.82 620557 49 5098 595898 0.85 600996 50 5220 586919 0.88 592139 51 4793 578186 0.82 582979 52 4976 629512 0.78 634488 53 5188 583554 0.88 588742 54 4938 577384 0.85 582322 55 5031 574362 0.87 579393 56 5360 628056 0.85 633416 57 5017 658272 0.76 663289 58 6475 600307 1.07 606782 59 5358 593751 0.89 599109 60 4721 567933 0.82 572654 61 4792 565712 0.84 570504 62 4976 558105 0.88 563081 63 4706 551051 0.85 555757 64 5043 607427 0.82 612470 65 5084 559561 0.90 564645 66 4811 604086 0.79 608897 67 4963 615089 0.80 620052 68 5163 567625 0.90 572788 69 4665 557214 0.83 561879 70 4674 541403 0.86 546077 71 5130 542463 0.94 547593 72 4696 536647 0.87 541343 73 4934 530872 0.92 535806 74 4868 531940 0.91 536808 75 4588 528340 0.86 532928 76 4674 529732 0.87 534406 77 4838 522422 0.92 527260 78 4400 520178 0.84 524578 79 4391 519949 0.84 524340 80 4660 516965 0.89 521625 81 4412 507460 0.86 511872 82 4563 500328 0.90 504891 83 4847 507968 0.95 512815 84 4703 557327 0.84 562030 85 4387 502877 0.86 507264 86 4758 544027 0.87 548785 87 4174 490287 0.84 494461 88 4210 488574 0.85 492784 89 4485 488284 0.91 492769 90 4302 477437 0.89 481739 91 4236 471352 0.89 475588 92 4372 469325 0.92 473697 93 4516 464350 0.96 468866 94 4278 460160 0.92 464438 95 4563 454083 0.99 458646 96 4295 442762 0.96 447057 97 4206 433668 0.96 437874 98 4091 402933 1.01 407024 99 2750 283555 0.96 286305 100 2716 250295 1.07 253011 101 4325 439822 0.97 444147 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57467 85486 40.20 142953 2 52834 81696 39.27 134530 3 56667 89814 38.69 146481 4 54271 98957 35.42 153228 5 22831 124233 15.52 147064 6 12935 63647 16.89 76582 7 11798 68445 14.70 80243 8 12236 69585 14.95 81821 9 11273 63484 15.08 74757 10 12429 65810 15.89 78239 11 13304 69969 15.98 83273 12 13212 78817 14.36 92029 13 13326 59721 18.24 73047 14 14187 65729 17.75 79916 15 13549 56584 19.32 70133 16 13156 55906 19.05 69062 17 15653 64505 19.53 80158 18 14879 57101 20.67 71980 19 14466 61075 19.15 75541 20 13705 54874 19.98 68579 21 14270 51536 21.68 65806 22 14166 53762 20.85 67928 23 13341 49886 21.10 63227 24 13417 53675 20.00 67092 25 15485 55671 21.76 71156 26 13101 55462 19.11 68563 27 15586 51052 23.39 66638 28 13108 46030 22.17 59138 29 13292 49515 21.16 62807 30 12792 62339 17.03 75131 31 12295 48432 20.25 60727 32 11995 44373 21.28 56368 33 13091 44740 22.64 57831 34 13015 49683 20.76 62698 35 14810 50357 22.73 65167 36 13021 50686 20.44 63707 37 12968 44242 22.67 57210 38 12106 45122 21.15 57228 39 12314 44508 21.67 56822 40 12941 45087 22.30 58028 41 11916 49481 19.41 61397 42 12004 47022 20.34 59026 43 11953 42712 21.87 54665 44 11400 40537 21.95 51937 45 13064 57016 18.64 70080 46 11015 40322 21.46 51337 47 11243 39159 22.31 50402 48 11171 40612 21.57 51783 49 10850 42585 20.31 53435 50 10351 39130 20.92 49481 51 10420 36208 22.35 46628 52 10554 47567 18.16 58121 53 10710 49651 17.74 60361 54 10406 40734 20.35 51140 55 10703 39081 21.50 49784 56 9770 38941 20.06 48711 57 10592 37181 22.17 47773 58 9821 36400 21.25 46221 59 9522 37512 20.24 47034 60 9819 37455 20.77 47274 61 8684 33310 20.68 41994 62 8866 30963 22.26 39829 63 9093 30935 22.72 40028 64 8972 30970 22.46 39942 65 8699 28133 23.62 36832 66 9190 31868 22.38 41058 67 8473 34030 19.94 42503 68 9024 43232 17.27 52256 69 8333 30560 21.43 38893 70 8173 31754 20.47 39927 71 8213 27169 23.21 35382 72 7935 26336 23.15 34271 73 7820 27327 22.25 35147 74 7275 27763 20.76 35038 75 7643 28190 21.33 35833 76 7381 25569 22.40 32950 77 7379 25029 22.77 32408 78 7365 28093 20.77 35458 79 6952 24756 21.93 31708 80 6877 23907 22.34 30784 81 6931 24828 21.82 31759 82 6815 25334 21.20 32149 83 6866 23281 22.78 30147 84 7305 24774 22.77 32079 85 6912 23896 22.44 30808 86 6755 23718 22.17 30473 87 6579 22510 22.62 29089 88 6658 22029 23.21 28687 89 6652 22257 23.01 28909 90 6555 22840 22.30 29395 91 6415 21142 23.28 27557 92 6135 20856 22.73 26991 93 6306 21318 22.83 27624 94 6520 21125 23.58 27645 95 6219 20571 23.21 26790 96 5907 20225 22.60 26132 97 6378 21100 23.21 27478 98 5628 19073 22.78 24701 99 5064 0 100.00 5064 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20852 112890 15.59 133742 2 22627 120710 15.79 143337 3 20053 113924 14.97 133977 4 22980 123014 15.74 145994 5 1410 216321 0.65 217731 6 1195 290992 0.41 292187 7 690 142546 0.48 143236 8 790 151712 0.52 152502 9 666 143309 0.46 143975 10 722 141777 0.51 142499 11 861 154038 0.56 154899 12 708 131710 0.53 132418 13 826 155876 0.53 156702 14 684 130221 0.52 130905 15 688 124474 0.55 125162 16 630 114547 0.55 115177 17 926 136029 0.68 136955 18 646 106468 0.60 107114 19 666 108365 0.61 109031 20 583 108386 0.54 108969 21 689 111204 0.62 111893 22 678 122646 0.55 123324 23 628 106190 0.59 106818 24 624 100044 0.62 100668 25 572 101280 0.56 101852 26 645 109980 0.58 110625 27 606 98490 0.61 99096 28 631 100853 0.62 101484 29 625 111144 0.56 111769 30 582 99003 0.58 99585 31 609 96010 0.63 96619 32 590 98707 0.59 99297 33 624 120222 0.52 120846 34 552 94191 0.58 94743 35 581 97323 0.59 97904 36 576 106421 0.54 106997 37 543 103575 0.52 104118 38 564 92436 0.61 93000 39 527 97389 0.54 97916 40 616 94965 0.64 95581 41 483 81367 0.59 81850 42 475 75753 0.62 76228 43 499 80330 0.62 80829 44 457 82671 0.55 83128 45 481 73414 0.65 73895 46 477 76101 0.62 76578 47 488 76644 0.63 77132 48 457 73478 0.62 73935 49 461 74185 0.62 74646 50 445 77048 0.57 77493 51 405 73019 0.55 73424 52 456 71109 0.64 71565 53 451 74987 0.60 75438 54 474 70695 0.67 71169 55 455 69940 0.65 70395 56 430 69346 0.62 69776 57 440 66599 0.66 67039 58 437 69060 0.63 69497 59 415 71150 0.58 71565 60 450 78681 0.57 79131 61 435 69079 0.63 69514 62 422 66094 0.63 66516 63 517 66910 0.77 67427 64 344 60120 0.57 60464 65 421 62654 0.67 63075 66 360 57687 0.62 58047 67 363 62230 0.58 62593 68 379 60631 0.62 61010 69 328 60693 0.54 61021 70 337 60170 0.56 60507 71 368 61796 0.59 62164 72 346 56924 0.60 57270 73 332 55665 0.59 55997 74 288 57451 0.50 57739 75 316 54619 0.58 54935 76 307 52171 0.59 52478 77 314 55929 0.56 56243 78 336 53134 0.63 53470 79 334 52788 0.63 53122 80 296 50867 0.58 51163 81 327 50731 0.64 51058 82 299 48938 0.61 49237 83 304 51078 0.59 51382 84 336 48191 0.69 48527 85 295 50744 0.58 51039 86 289 46157 0.62 46446 87 305 46934 0.65 47239 88 307 46330 0.66 46637 89 337 48241 0.69 48578 90 320 48272 0.66 48592 91 287 49273 0.58 49560 92 237 46088 0.51 46325 93 306 42290 0.72 42596 94 284 42567 0.66 42851 95 273 43139 0.63 43412 96 245 42499 0.57 42744 97 285 41458 0.68 41743 98 197 39337 0.50 39534 99 164 0 100.00 164 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28640 152082 15.85 180722 2 22285 125638 15.07 147923 3 23053 130021 15.06 153074 4 23594 127632 15.60 151226 5 2236 245046 0.90 247282 6 2189 343089 0.63 345278 7 2652 457938 0.58 460590 8 2700 456806 0.59 459506 9 2817 432041 0.65 434858 10 2668 429323 0.62 431991 11 2667 423277 0.63 425944 12 2812 388362 0.72 391174 13 2675 407843 0.65 410518 14 2761 411140 0.67 413901 15 2609 402584 0.64 405193 16 2563 391826 0.65 394389 17 2645 387374 0.68 390019 18 2761 413306 0.66 416067 19 2524 380173 0.66 382697 20 2616 417722 0.62 420338 21 2457 370874 0.66 373331 22 2545 373082 0.68 375627 23 2369 356611 0.66 358980 24 2316 348779 0.66 351095 25 2332 342333 0.68 344665 26 2283 336683 0.67 338966 27 2501 364430 0.68 366931 28 2319 344815 0.67 347134 29 2266 339335 0.66 341601 30 2264 326019 0.69 328283 31 2221 325992 0.68 328213 32 2142 332447 0.64 334589 33 2113 311962 0.67 314075 34 2160 310190 0.69 312350 35 2340 313974 0.74 316314 36 2218 318084 0.69 320302 37 2340 307009 0.76 309349 38 2328 332045 0.70 334373 39 2135 307938 0.69 310073 40 2166 314053 0.68 316219 41 2068 309337 0.66 311405 42 2131 302246 0.70 304377 43 2068 291320 0.70 293388 44 1969 288722 0.68 290691 45 2098 294361 0.71 296459 46 2068 295238 0.70 297306 47 1956 294856 0.66 296812 48 2000 280926 0.71 282926 49 1873 272456 0.68 274329 50 1809 267040 0.67 268849 51 1802 259540 0.69 261342 52 1683 248096 0.67 249779 53 1659 252490 0.65 254149 54 1755 246823 0.71 248578 55 1863 259041 0.71 260904 56 1677 247334 0.67 249011 57 1629 249232 0.65 250861 58 1687 241759 0.69 243446 59 1660 238030 0.69 239690 60 1689 245753 0.68 247442 61 1609 241969 0.66 243578 62 1627 228059 0.71 229686 63 1557 230238 0.67 231795 64 1494 222828 0.67 224322 65 1558 225385 0.69 226943 66 1536 221720 0.69 223256 67 1458 215072 0.67 216530 68 1528 218632 0.69 220160 69 1501 215324 0.69 216825 70 1495 212403 0.70 213898 71 1450 215237 0.67 216687 72 1436 206406 0.69 207842 73 1392 202209 0.68 203601 74 1322 199811 0.66 201133 75 1402 200267 0.70 201669 76 1335 194559 0.68 195894 77 1343 191520 0.70 192863 78 1320 194464 0.67 195784 79 1328 196436 0.67 197764 80 1290 189222 0.68 190512 81 1296 188380 0.68 189676 82 1269 185426 0.68 186695 83 1225 183942 0.66 185167 84 1207 183659 0.65 184866 85 1211 181809 0.66 183020 86 1234 180120 0.68 181354 87 1269 173442 0.73 174711 88 1182 173208 0.68 174390 89 1158 169489 0.68 170647 90 1270 168085 0.75 169355 91 1194 167575 0.71 168769 92 1165 172290 0.67 173455 93 1099 164926 0.66 166025 94 1132 158637 0.71 159769 95 1143 156692 0.72 157835 96 1065 155544 0.68 156609 97 1211 154679 0.78 155890 98 864 146138 0.59 147002 99 662 0 100.00 662