/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 03:32 on 2019-02-24
Alignment
Sequence pairs analysed in total
10000000
Paired-end alignments with a unique best hit
5263641
Pairs without alignments under any condition
3432243
Pairs that did not map uniquely
1304116
Genomic sequence context not extractable (edges of chromosomes)
3772
Cytosine Methylation
Total C's analysed
169311978
Methylated C's in CpG context
5355450
Methylated C's in CHG context
754875
Methylated C's in CHH context
1313360
Methylated C's in Unknown context
22194
Unmethylated C's in CpG context
18559811
Unmethylated C's in CHG context
35098998
Unmethylated C's in CHH context
108229484
Unmethylated C's in Unknown context
353382
Percentage methylation (CpG context)
22.4%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2654212
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2605657
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions