/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 23:40 on 2019-02-23
Alignment
Sequence pairs analysed in total
1000000
Paired-end alignments with a unique best hit
525814
Pairs without alignments under any condition
344030
Pairs that did not map uniquely
130156
Genomic sequence context not extractable (edges of chromosomes)
373
Cytosine Methylation
Total C's analysed
16939037
Methylated C's in CpG context
534878
Methylated C's in CHG context
74913
Methylated C's in CHH context
132227
Methylated C's in Unknown context
2378
Unmethylated C's in CpG context
1860292
Unmethylated C's in CHG context
3511218
Unmethylated C's in CHH context
10825509
Unmethylated C's in Unknown context
35307
Percentage methylation (CpG context)
22.3%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
265258
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
260183
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions