CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 49160 109233 31.04 158393 2 44337 114190 27.97 158527 3 40526 94327 30.05 134853 4 41153 68314 37.59 109467 5 38218 60405 38.75 98623 6 38114 50959 42.79 89073 7 41650 50839 45.03 92489 8 19498 60335 24.42 79833 9 17804 58077 23.46 75881 10 17817 55259 24.38 73076 11 18536 57181 24.48 75717 12 17880 55085 24.50 72965 13 17156 56246 23.37 73402 14 16381 58875 21.77 75256 15 15666 55769 21.93 71435 16 14590 54669 21.07 69259 17 13751 54204 20.24 67955 18 14001 56542 19.85 70543 19 13816 55529 19.92 69345 20 13850 57656 19.37 71506 21 14189 55765 20.28 69954 22 13744 53747 20.36 67491 23 13519 53450 20.19 66969 24 13493 52492 20.45 65985 25 13035 53428 19.61 66463 26 13366 75861 14.98 89227 27 13416 59589 18.38 73005 28 13792 58865 18.98 72657 29 13502 60343 18.28 73845 30 13174 56064 19.03 69238 31 13412 53975 19.90 67387 32 13165 52699 19.99 65864 33 13357 54738 19.62 68095 34 13503 53676 20.10 67179 35 13251 54140 19.66 67391 36 12956 55408 18.95 68364 37 12611 53818 18.98 66429 38 12825 53153 19.44 65978 39 12899 52595 19.69 65494 40 13203 52055 20.23 65258 41 12722 52523 19.50 65245 42 13147 54816 19.34 67963 43 12847 53753 19.29 66600 44 12924 50996 20.22 63920 45 13121 51562 20.29 64683 46 13472 54004 19.97 67476 47 12944 51318 20.14 64262 48 12911 52740 19.67 65651 49 13154 51014 20.50 64168 50 12975 51736 20.05 64711 51 13022 50204 20.60 63226 52 13062 54822 19.24 67884 53 12476 50089 19.94 62565 54 12358 51142 19.46 63500 55 12550 49866 20.11 62416 56 12403 51178 19.51 63581 57 12693 48805 20.64 61498 58 12897 49624 20.63 62521 59 12723 48619 20.74 61342 60 12408 49239 20.13 61647 61 12580 49628 20.22 62208 62 12286 50521 19.56 62807 63 12113 50025 19.49 62138 64 12133 49774 19.60 61907 65 12321 49257 20.01 61578 66 12576 48098 20.73 60674 67 12194 46689 20.71 58883 68 11777 46007 20.38 57784 69 12015 46184 20.64 58199 70 11772 46985 20.04 58757 71 11546 44584 20.57 56130 72 11526 46582 19.84 58108 73 11521 44963 20.40 56484 74 11609 46725 19.90 58334 75 11118 45889 19.50 57007 76 11321 47459 19.26 58780 77 11420 43777 20.69 55197 78 11204 44463 20.13 55667 79 11009 55552 16.54 66561 80 10890 46604 18.94 57494 81 10778 47728 18.42 58506 82 10711 44507 19.40 55218 83 10889 44829 19.54 55718 84 10889 46275 19.05 57164 85 10741 43343 19.86 54084 86 10471 48192 17.85 58663 87 10231 45663 18.30 55894 88 10515 45010 18.94 55525 89 10076 42532 19.15 52608 90 10123 42436 19.26 52559 91 10085 44020 18.64 54105 92 9605 42505 18.43 52110 93 9903 40875 19.50 50778 94 10024 39745 20.14 49769 95 9694 40376 19.36 50070 96 10058 40777 19.79 50835 97 9782 52909 15.60 62691 98 8830 39566 18.25 48396 99 7101 31058 18.61 38159 100 8966 36845 19.57 45811 101 8090 35957 18.37 44047 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 82953 95441 46.50 178394 2 47265 83388 36.18 130653 3 17212 79577 17.78 96789 4 7376 87633 7.76 95009 5 4309 82956 4.94 87265 6 3517 78071 4.31 81588 7 2654 101857 2.54 104511 8 1141 107473 1.05 108614 9 975 102253 0.94 103228 10 919 97015 0.94 97934 11 900 95918 0.93 96818 12 941 98794 0.94 99735 13 790 94344 0.83 95134 14 740 92299 0.80 93039 15 694 93216 0.74 93910 16 627 93086 0.67 93713 17 610 91481 0.66 92091 18 601 91950 0.65 92551 19 596 94532 0.63 95128 20 604 99533 0.60 100137 21 658 98789 0.66 99447 22 639 97298 0.65 97937 23 630 97570 0.64 98200 24 625 98445 0.63 99070 25 603 95193 0.63 95796 26 635 97289 0.65 97924 27 625 98703 0.63 99328 28 621 101968 0.61 102589 29 774 126091 0.61 126865 30 663 104134 0.63 104797 31 630 103344 0.61 103974 32 642 99133 0.64 99775 33 600 95995 0.62 96595 34 642 98184 0.65 98826 35 659 97522 0.67 98181 36 661 97665 0.67 98326 37 598 92573 0.64 93171 38 638 94959 0.67 95597 39 632 97060 0.65 97692 40 689 97622 0.70 98311 41 673 101509 0.66 102182 42 632 97280 0.65 97912 43 655 94331 0.69 94986 44 652 97091 0.67 97743 45 645 96202 0.67 96847 46 698 95636 0.72 96334 47 679 93913 0.72 94592 48 750 124201 0.60 124951 49 682 100245 0.68 100927 50 748 99416 0.75 100164 51 715 98320 0.72 99035 52 720 97903 0.73 98623 53 825 118365 0.69 119190 54 723 103633 0.69 104356 55 693 99055 0.69 99748 56 761 94171 0.80 94932 57 765 94520 0.80 95285 58 1124 124407 0.90 125531 59 844 103890 0.81 104734 60 766 102216 0.74 102982 61 775 96474 0.80 97249 62 771 94999 0.81 95770 63 787 96365 0.81 97152 64 739 96015 0.76 96754 65 826 95457 0.86 96283 66 809 92467 0.87 93276 67 798 90022 0.88 90820 68 923 116829 0.78 117752 69 866 95943 0.89 96809 70 822 94748 0.86 95570 71 754 91127 0.82 91881 72 809 88982 0.90 89791 73 739 88182 0.83 88921 74 836 89282 0.93 90118 75 807 87641 0.91 88448 76 755 83696 0.89 84451 77 735 84685 0.86 85420 78 800 86909 0.91 87709 79 833 84617 0.97 85450 80 809 89384 0.90 90193 81 747 85264 0.87 86011 82 750 82945 0.90 83695 83 755 86006 0.87 86761 84 734 84941 0.86 85675 85 807 86017 0.93 86824 86 725 84204 0.85 84929 87 789 83049 0.94 83838 88 721 80370 0.89 81091 89 783 80279 0.97 81062 90 771 89740 0.85 90511 91 741 81512 0.90 82253 92 790 81277 0.96 82067 93 853 78908 1.07 79761 94 803 78037 1.02 78840 95 838 75988 1.09 76826 96 830 75601 1.09 76431 97 779 69226 1.11 70005 98 720 62877 1.13 63597 99 503 41081 1.21 41584 100 500 41608 1.19 42108 101 1079 69105 1.54 70184 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64436 94487 40.55 158923 2 28401 98329 22.41 126730 3 12492 133418 8.56 145910 4 9852 148328 6.23 158180 5 8528 185366 4.40 193894 6 6825 206864 3.19 213689 7 6164 267487 2.25 273651 8 3542 316023 1.11 319565 9 2705 268054 1.00 270759 10 2587 258572 0.99 261159 11 2770 257370 1.06 260140 12 2497 256759 0.96 259256 13 2685 258466 1.03 261151 14 2654 265544 0.99 268198 15 2484 274902 0.90 277386 16 2496 279872 0.88 282368 17 2794 314172 0.88 316966 18 2562 305890 0.83 308452 19 2396 303681 0.78 306077 20 2548 306596 0.82 309144 21 2461 307587 0.79 310048 22 2593 303938 0.85 306531 23 2707 310219 0.87 312926 24 2648 338669 0.78 341317 25 2644 318312 0.82 320956 26 2682 328181 0.81 330863 27 2600 322627 0.80 325227 28 2487 321694 0.77 324181 29 2721 318541 0.85 321262 30 2494 313980 0.79 316474 31 2481 309398 0.80 311879 32 2616 310594 0.84 313210 33 2460 308840 0.79 311300 34 2593 310421 0.83 313014 35 2741 312985 0.87 315726 36 2613 343517 0.75 346130 37 2656 323905 0.81 326561 38 2762 324365 0.84 327127 39 2620 348526 0.75 351146 40 2630 319444 0.82 322074 41 2813 315343 0.88 318156 42 2698 339522 0.79 342220 43 2873 315657 0.90 318530 44 3070 343749 0.89 346819 45 2859 343196 0.83 346055 46 2822 349077 0.80 351899 47 2805 327511 0.85 330316 48 2611 322462 0.80 325073 49 2675 314457 0.84 317132 50 2735 309331 0.88 312066 51 2534 304228 0.83 306762 52 2688 331199 0.81 333887 53 2768 308305 0.89 311073 54 2601 304529 0.85 307130 55 2606 304417 0.85 307023 56 2888 329475 0.87 332363 57 2589 341891 0.75 344480 58 3270 315514 1.03 318784 59 2883 309748 0.92 312631 60 2471 297603 0.82 300074 61 2673 296702 0.89 299375 62 2656 293515 0.90 296171 63 2547 290785 0.87 293332 64 2707 317157 0.85 319864 65 2698 296358 0.90 299056 66 2598 316163 0.82 318761 67 2595 320809 0.80 323404 68 2757 297392 0.92 300149 69 2494 293094 0.84 295588 70 2474 286062 0.86 288536 71 2686 286251 0.93 288937 72 2480 284007 0.87 286487 73 2678 280580 0.95 283258 74 2706 279979 0.96 282685 75 2459 277570 0.88 280029 76 2509 278755 0.89 281264 77 2645 276259 0.95 278904 78 2393 275664 0.86 278057 79 2498 275190 0.90 277688 80 2602 271068 0.95 273670 81 2449 264484 0.92 266933 82 2487 264320 0.93 266807 83 2673 266945 0.99 269618 84 2510 289972 0.86 292482 85 2393 265255 0.89 267648 86 2493 282607 0.87 285100 87 2261 258489 0.87 260750 88 2256 256617 0.87 258873 89 2425 256473 0.94 258898 90 2288 251613 0.90 253901 91 2242 249310 0.89 251552 92 2379 247155 0.95 249534 93 2331 246362 0.94 248693 94 2311 243090 0.94 245401 95 2490 241709 1.02 244199 96 2295 234971 0.97 237266 97 2209 231974 0.94 234183 98 2143 216564 0.98 218707 99 1454 153120 0.94 154574 100 1428 133548 1.06 134976 101 2232 231982 0.95 234214 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30173 46619 39.29 76792 2 27513 45930 37.46 73443 3 29253 49175 37.30 78428 4 28549 56591 33.53 85140 5 11498 70608 14.00 82106 6 6673 35504 15.82 42177 7 6119 38516 13.71 44635 8 6258 39026 13.82 45284 9 5923 37148 13.75 43071 10 6455 37131 14.81 43586 11 6875 41846 14.11 48721 12 6863 43070 13.74 49933 13 6910 33663 17.03 40573 14 7267 37227 16.33 44494 15 7083 30345 18.92 37428 16 6761 31014 17.90 37775 17 7921 35208 18.37 43129 18 7698 31171 19.80 38869 19 7539 32610 18.78 40149 20 7074 30982 18.59 38056 21 7351 28471 20.52 35822 22 7360 29859 19.77 37219 23 6888 27388 20.10 34276 24 6847 30975 18.10 37822 25 7909 30315 20.69 38224 26 6814 29018 19.02 35832 27 8083 28198 22.28 36281 28 6734 25098 21.15 31832 29 6874 28283 19.55 35157 30 6621 30033 18.06 36654 31 6457 27464 19.04 33921 32 6165 25498 19.47 31663 33 6709 24712 21.35 31421 34 6716 26904 19.98 33620 35 7691 28041 21.52 35732 36 6678 27222 19.70 33900 37 6648 24409 21.41 31057 38 6257 25006 20.01 31263 39 6356 23980 20.95 30336 40 6750 24313 21.73 31063 41 6231 26301 19.15 32532 42 6232 26038 19.31 32270 43 6050 23601 20.40 29651 44 5870 23087 20.27 28957 45 6737 30400 18.14 37137 46 5714 21118 21.30 26832 47 5851 22494 20.64 28345 48 5862 23481 19.98 29343 49 5629 23740 19.17 29369 50 5457 21175 20.49 26632 51 5388 20226 21.04 25614 52 5548 24518 18.45 30066 53 5465 23332 18.98 28797 54 5462 23191 19.06 28653 55 5503 21669 20.25 27172 56 5131 21158 19.52 26289 57 5553 19884 21.83 25437 58 5104 20193 20.18 25297 59 4986 20412 19.63 25398 60 5108 20295 20.11 25403 61 4526 19408 18.91 23934 62 4603 17299 21.02 21902 63 4683 17973 20.67 22656 64 4653 17688 20.83 22341 65 4576 15542 22.75 20118 66 4728 17795 20.99 22523 67 4557 19675 18.81 24232 68 4655 23530 16.52 28185 69 4303 18147 19.17 22450 70 4238 17438 19.55 21676 71 4282 14772 22.47 19054 72 4131 14494 22.18 18625 73 4089 14867 21.57 18956 74 3819 15323 19.95 19142 75 3942 15940 19.83 19882 76 3861 14687 20.82 18548 77 3915 14302 21.49 18217 78 3810 15447 19.79 19257 79 3575 13203 21.31 16778 80 3548 13190 21.20 16738 81 3649 13792 20.92 17441 82 3518 13669 20.47 17187 83 3574 12276 22.55 15850 84 3803 13229 22.33 17032 85 3487 12908 21.27 16395 86 3405 12816 20.99 16221 87 3394 12843 20.90 16237 88 3443 13005 20.93 16448 89 3467 12752 21.38 16219 90 3495 12636 21.67 16131 91 3415 11717 22.57 15132 92 3200 11627 21.58 14827 93 3225 11736 21.56 14961 94 3435 11583 22.87 15018 95 3229 11379 22.10 14608 96 3075 11687 20.83 14762 97 3232 11237 22.34 14469 98 2931 10318 22.12 13249 99 2731 0 100.00 2731 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 10533 57670 15.44 68203 2 12105 63756 15.96 75861 3 10581 60599 14.87 71180 4 11953 64300 15.68 76253 5 686 115609 0.59 116295 6 618 151464 0.41 152082 7 333 75229 0.44 75562 8 373 81036 0.46 81409 9 332 74670 0.44 75002 10 376 74373 0.50 74749 11 437 81429 0.53 81866 12 388 72339 0.53 72727 13 377 81062 0.46 81439 14 341 70768 0.48 71109 15 340 70383 0.48 70723 16 362 62706 0.57 63068 17 498 72115 0.69 72613 18 339 57522 0.59 57861 19 360 58435 0.61 58795 20 309 58370 0.53 58679 21 347 59994 0.58 60341 22 358 65486 0.54 65844 23 305 56935 0.53 57240 24 328 54810 0.59 55138 25 270 54098 0.50 54368 26 292 58372 0.50 58664 27 319 53808 0.59 54127 28 331 55132 0.60 55463 29 346 60510 0.57 60856 30 316 53918 0.58 54234 31 305 50743 0.60 51048 32 317 53197 0.59 53514 33 309 63148 0.49 63457 34 288 51426 0.56 51714 35 311 53039 0.58 53350 36 296 56116 0.52 56412 37 317 54921 0.57 55238 38 303 49259 0.61 49562 39 279 52436 0.53 52715 40 323 50623 0.63 50946 41 292 44115 0.66 44407 42 247 41668 0.59 41915 43 263 44531 0.59 44794 44 240 45146 0.53 45386 45 240 39959 0.60 40199 46 233 40554 0.57 40787 47 265 40771 0.65 41036 48 239 40500 0.59 40739 49 242 40114 0.60 40356 50 238 41453 0.57 41691 51 226 38628 0.58 38854 52 225 38198 0.59 38423 53 231 40574 0.57 40805 54 250 37760 0.66 38010 55 244 37270 0.65 37514 56 220 36976 0.59 37196 57 226 35708 0.63 35934 58 243 37556 0.64 37799 59 197 38659 0.51 38856 60 222 41393 0.53 41615 61 217 36713 0.59 36930 62 214 35597 0.60 35811 63 203 35866 0.56 36069 64 186 32475 0.57 32661 65 198 34446 0.57 34644 66 203 31401 0.64 31604 67 196 33707 0.58 33903 68 221 33080 0.66 33301 69 179 32999 0.54 33178 70 181 32418 0.56 32599 71 199 33542 0.59 33741 72 187 31232 0.60 31419 73 165 30475 0.54 30640 74 169 31110 0.54 31279 75 165 29166 0.56 29331 76 148 28546 0.52 28694 77 170 30199 0.56 30369 78 173 29216 0.59 29389 79 203 28750 0.70 28953 80 157 27576 0.57 27733 81 162 27204 0.59 27366 82 155 26510 0.58 26665 83 141 27240 0.51 27381 84 177 26685 0.66 26862 85 138 28038 0.49 28176 86 145 25533 0.56 25678 87 165 25622 0.64 25787 88 181 25602 0.70 25783 89 182 26553 0.68 26735 90 181 26343 0.68 26524 91 146 26661 0.54 26807 92 139 25610 0.54 25749 93 165 22961 0.71 23126 94 158 22595 0.69 22753 95 143 22979 0.62 23122 96 124 22823 0.54 22947 97 153 22991 0.66 23144 98 102 21418 0.47 21520 99 89 0 100.00 89 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 15189 81029 15.79 96218 2 11900 66581 15.16 78481 3 12461 68851 15.32 81312 4 12444 66461 15.77 78905 5 1184 125478 0.93 126662 6 1235 179725 0.68 180960 7 1517 245749 0.61 247266 8 1391 246861 0.56 248252 9 1491 231445 0.64 232936 10 1480 228308 0.64 229788 11 1399 222178 0.63 223577 12 1406 205973 0.68 207379 13 1422 216382 0.65 217804 14 1577 217626 0.72 219203 15 1328 212882 0.62 214210 16 1307 206631 0.63 207938 17 1457 205331 0.70 206788 18 1431 216350 0.66 217781 19 1362 202064 0.67 203426 20 1485 218955 0.67 220440 21 1302 195845 0.66 197147 22 1487 195419 0.76 196906 23 1313 189066 0.69 190379 24 1201 182452 0.65 183653 25 1335 181744 0.73 183079 26 1249 180821 0.69 182070 27 1345 193851 0.69 195196 28 1292 185345 0.69 186637 29 1246 180473 0.69 181719 30 1207 175090 0.68 176297 31 1240 172566 0.71 173806 32 1193 175138 0.68 176331 33 1222 166096 0.73 167318 34 1116 163057 0.68 164173 35 1220 166553 0.73 167773 36 1197 168758 0.70 169955 37 1281 162571 0.78 163852 38 1315 177231 0.74 178546 39 1099 163159 0.67 164258 40 1212 166814 0.72 168026 41 1210 163052 0.74 164262 42 1209 160051 0.75 161260 43 1161 153629 0.75 154790 44 1076 153651 0.70 154727 45 1133 154988 0.73 156121 46 1167 156091 0.74 157258 47 1037 154880 0.67 155917 48 1067 148171 0.71 149238 49 1112 143435 0.77 144547 50 989 142024 0.69 143013 51 958 137966 0.69 138924 52 989 131729 0.75 132718 53 1001 133669 0.74 134670 54 931 132213 0.70 133144 55 922 137168 0.67 138090 56 944 131822 0.71 132766 57 926 131459 0.70 132385 58 886 127624 0.69 128510 59 986 125615 0.78 126601 60 927 130277 0.71 131204 61 892 127492 0.69 128384 62 898 120011 0.74 120909 63 869 121583 0.71 122452 64 832 117648 0.70 118480 65 856 118374 0.72 119230 66 850 116408 0.72 117258 67 835 112909 0.73 113744 68 846 114451 0.73 115297 69 769 113348 0.67 114117 70 873 112655 0.77 113528 71 792 113285 0.69 114077 72 842 109922 0.76 110764 73 780 105696 0.73 106476 74 698 104795 0.66 105493 75 816 105353 0.77 106169 76 762 102011 0.74 102773 77 785 100795 0.77 101580 78 759 101861 0.74 102620 79 759 103880 0.73 104639 80 766 100637 0.76 101403 81 758 99750 0.75 100508 82 711 98061 0.72 98772 83 730 96627 0.75 97357 84 696 97461 0.71 98157 85 783 96844 0.80 97627 86 831 96896 0.85 97727 87 724 92897 0.77 93621 88 713 92656 0.76 93369 89 688 90272 0.76 90960 90 668 88812 0.75 89480 91 653 88403 0.73 89056 92 675 91182 0.73 91857 93 658 87488 0.75 88146 94 699 84162 0.82 84861 95 673 82454 0.81 83127 96 587 81764 0.71 82351 97 645 82235 0.78 82880 98 537 77661 0.69 78198 99 351 0 100.00 351