/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 20:48 on 2019-02-23
Alignment
Sequence pairs analysed in total
5000000
Paired-end alignments with a unique best hit
2781620
Pairs without alignments under any condition
1380229
Pairs that did not map uniquely
838151
Genomic sequence context not extractable (edges of chromosomes)
3301
Cytosine Methylation
Total C's analysed
89926108
Methylated C's in CpG context
2751759
Methylated C's in CHG context
396227
Methylated C's in CHH context
699376
Methylated C's in Unknown context
11850
Unmethylated C's in CpG context
10353939
Unmethylated C's in CHG context
18822996
Unmethylated C's in CHH context
56901811
Unmethylated C's in Unknown context
172910
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1383875
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
1394444
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions