/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 18:49 on 2019-02-23
Alignment
Sequence pairs analysed in total
500000
Paired-end alignments with a unique best hit
277358
Pairs without alignments under any condition
139313
Pairs that did not map uniquely
83329
Genomic sequence context not extractable (edges of chromosomes)
319
Cytosine Methylation
Total C's analysed
8981086
Methylated C's in CpG context
274686
Methylated C's in CHG context
39211
Methylated C's in CHH context
71259
Methylated C's in Unknown context
1270
Unmethylated C's in CpG context
1036067
Unmethylated C's in CHG context
1879786
Unmethylated C's in CHH context
5680077
Unmethylated C's in Unknown context
17131
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
137967
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
139072
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions