pgen_bsseq_all_R1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 1110199 lines in total Total number of methylation call strings processed: 2220398 Final Cytosine Methylation Report ================================= Total number of C's analysed: 26767881 Total methylated C's in CpG context: 840577 Total methylated C's in CHG context: 121614 Total methylated C's in CHH context: 212760 Total C to T conversions in CpG context: 3058280 Total C to T conversions in CHG context: 5541356 Total C to T conversions in CHH context: 16993294 C methylated in CpG context: 21.6% C methylated in CHG context: 2.1% C methylated in CHH context: 1.2%