CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19613 43482 31.08 63095 2 17909 45364 28.30 63273 3 16385 37681 30.31 54066 4 16496 27268 37.69 43764 5 15361 24151 38.88 39512 6 15096 20496 42.41 35592 7 16902 20379 45.34 37281 8 7682 24115 24.16 31797 9 7218 23120 23.79 30338 10 7071 22075 24.26 29146 11 7445 22934 24.51 30379 12 7016 22015 24.17 29031 13 6916 22733 23.33 29649 14 6577 23473 21.89 30050 15 6232 22499 21.69 28731 16 5886 21882 21.20 27768 17 5435 21817 19.94 27252 18 5591 22635 19.81 28226 19 5511 22100 19.96 27611 20 5561 23128 19.38 28689 21 5617 22141 20.24 27758 22 5489 21448 20.38 26937 23 5421 21395 20.22 26816 24 5457 20862 20.73 26319 25 5147 21282 19.47 26429 26 5361 30121 15.11 35482 27 5400 23683 18.57 29083 28 5476 23634 18.81 29110 29 5369 24402 18.03 29771 30 5191 22475 18.76 27666 31 5318 21576 19.77 26894 32 5341 21012 20.27 26353 33 5381 21800 19.80 27181 34 5408 21689 19.96 27097 35 5195 21651 19.35 26846 36 5232 22053 19.18 27285 37 5059 21505 19.04 26564 38 5029 21096 19.25 26125 39 4998 20949 19.26 25947 40 5354 20835 20.44 26189 41 5123 20954 19.65 26077 42 5353 21865 19.67 27218 43 5121 21339 19.35 26460 44 5155 20604 20.01 25759 45 5173 20647 20.03 25820 46 5372 21470 20.01 26842 47 5298 20586 20.47 25884 48 5155 21071 19.66 26226 49 5282 20398 20.57 25680 50 5206 20704 20.09 25910 51 5040 20188 19.98 25228 52 5303 21976 19.44 27279 53 5012 19929 20.10 24941 54 4931 20522 19.37 25453 55 5074 19859 20.35 24933 56 4944 20705 19.28 25649 57 5137 19595 20.77 24732 58 5164 19883 20.62 25047 59 5046 19538 20.53 24584 60 4996 19703 20.23 24699 61 5034 19865 20.22 24899 62 4869 20183 19.44 25052 63 4851 19790 19.69 24641 64 4818 19911 19.48 24729 65 4881 19657 19.89 24538 66 5075 19190 20.91 24265 67 4943 18976 20.67 23919 68 4620 18581 19.91 23201 69 4792 18386 20.67 23178 70 4727 18844 20.05 23571 71 4685 17852 20.79 22537 72 4573 18733 19.62 23306 73 4583 18091 20.21 22674 74 4557 18602 19.68 23159 75 4490 18337 19.67 22827 76 4553 18899 19.41 23452 77 4524 17516 20.53 22040 78 4473 17982 19.92 22455 79 4536 22149 17.00 26685 80 4317 18580 18.85 22897 81 4247 19042 18.24 23289 82 4343 17869 19.55 22212 83 4456 18029 19.82 22485 84 4338 18492 19.00 22830 85 4277 17422 19.71 21699 86 4201 19310 17.87 23511 87 4038 18245 18.12 22283 88 4204 18070 18.87 22274 89 4085 17005 19.37 21090 90 4036 16940 19.24 20976 91 3951 17637 18.30 21588 92 3775 16829 18.32 20604 93 4011 16344 19.71 20355 94 3933 16091 19.64 20024 95 3894 16156 19.42 20050 96 3928 16434 19.29 20362 97 3900 21184 15.55 25084 98 3583 15834 18.45 19417 99 2904 12728 18.58 15632 100 3745 14806 20.19 18551 101 3215 14557 18.09 17772 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33434 38322 46.59 71756 2 18884 33176 36.27 52060 3 6990 31926 17.96 38916 4 2843 34970 7.52 37813 5 1744 33279 4.98 35023 6 1369 31290 4.19 32659 7 1074 40822 2.56 41896 8 456 42848 1.05 43304 9 406 41013 0.98 41419 10 355 38785 0.91 39140 11 329 38580 0.85 38909 12 387 39411 0.97 39798 13 298 37490 0.79 37788 14 290 37058 0.78 37348 15 266 37371 0.71 37637 16 268 37098 0.72 37366 17 242 36713 0.65 36955 18 240 36663 0.65 36903 19 237 37822 0.62 38059 20 244 39480 0.61 39724 21 249 39764 0.62 40013 22 264 38930 0.67 39194 23 233 38752 0.60 38985 24 269 39455 0.68 39724 25 233 37940 0.61 38173 26 253 38848 0.65 39101 27 242 39588 0.61 39830 28 234 40941 0.57 41175 29 322 50234 0.64 50556 30 259 41474 0.62 41733 31 248 41397 0.60 41645 32 255 39586 0.64 39841 33 246 38611 0.63 38857 34 233 39449 0.59 39682 35 263 38802 0.67 39065 36 270 39007 0.69 39277 37 234 37193 0.63 37427 38 253 37754 0.67 38007 39 272 38724 0.70 38996 40 278 38856 0.71 39134 41 252 40733 0.61 40985 42 240 38919 0.61 39159 43 251 37813 0.66 38064 44 262 38798 0.67 39060 45 255 38239 0.66 38494 46 272 38330 0.70 38602 47 254 37336 0.68 37590 48 308 49536 0.62 49844 49 268 40066 0.66 40334 50 310 40157 0.77 40467 51 276 39256 0.70 39532 52 293 38881 0.75 39174 53 321 47097 0.68 47418 54 294 41406 0.71 41700 55 270 39730 0.68 40000 56 289 37548 0.76 37837 57 296 37804 0.78 38100 58 345 49923 0.69 50268 59 350 41547 0.84 41897 60 318 41241 0.77 41559 61 310 38705 0.79 39015 62 286 37874 0.75 38160 63 279 38605 0.72 38884 64 283 38277 0.73 38560 65 328 38174 0.85 38502 66 327 37298 0.87 37625 67 300 35972 0.83 36272 68 348 46729 0.74 47077 69 356 38181 0.92 38537 70 333 37854 0.87 38187 71 292 36606 0.79 36898 72 304 35832 0.84 36136 73 289 35144 0.82 35433 74 318 35538 0.89 35856 75 313 35166 0.88 35479 76 297 33370 0.88 33667 77 296 33866 0.87 34162 78 324 34858 0.92 35182 79 313 33731 0.92 34044 80 310 35861 0.86 36171 81 300 34170 0.87 34470 82 290 33130 0.87 33420 83 326 34482 0.94 34808 84 290 33908 0.85 34198 85 294 34504 0.84 34798 86 283 33654 0.83 33937 87 299 33229 0.89 33528 88 264 32484 0.81 32748 89 288 31933 0.89 32221 90 327 35865 0.90 36192 91 303 32666 0.92 32969 92 330 32512 1.00 32842 93 323 31782 1.01 32105 94 324 30938 1.04 31262 95 341 30399 1.11 30740 96 321 30131 1.05 30452 97 309 27689 1.10 27998 98 312 25307 1.22 25619 99 212 16535 1.27 16747 100 202 16624 1.20 16826 101 416 27738 1.48 28154 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 25960 37945 40.62 63905 2 11327 38899 22.55 50226 3 5089 53235 8.73 58324 4 3936 59442 6.21 63378 5 3509 74076 4.52 77585 6 2794 82702 3.27 85496 7 2486 106448 2.28 108934 8 1421 126013 1.12 127434 9 1099 106883 1.02 107982 10 1046 103179 1.00 104225 11 1147 102667 1.10 103814 12 992 102479 0.96 103471 13 1116 102789 1.07 103905 14 1077 106340 1.00 107417 15 1026 109718 0.93 110744 16 1068 111712 0.95 112780 17 1105 125723 0.87 126828 18 1007 122182 0.82 123189 19 956 121417 0.78 122373 20 1060 122238 0.86 123298 21 1001 123138 0.81 124139 22 1096 121436 0.89 122532 23 1089 123475 0.87 124564 24 1057 135120 0.78 136177 25 1068 127169 0.83 128237 26 1077 131053 0.82 132130 27 1052 128849 0.81 129901 28 1032 128688 0.80 129720 29 1072 127061 0.84 128133 30 1004 125508 0.79 126512 31 1027 123640 0.82 124667 32 1053 123756 0.84 124809 33 943 123366 0.76 124309 34 1051 123467 0.84 124518 35 1107 124722 0.88 125829 36 1049 137413 0.76 138462 37 1048 129484 0.80 130532 38 1113 129843 0.85 130956 39 1019 139219 0.73 140238 40 1090 127428 0.85 128518 41 1118 125825 0.88 126943 42 1080 135181 0.79 136261 43 1184 126488 0.93 127672 44 1281 137552 0.92 138833 45 1138 137369 0.82 138507 46 1145 139026 0.82 140171 47 1166 130859 0.88 132025 48 1041 128786 0.80 129827 49 1073 125678 0.85 126751 50 1098 123986 0.88 125084 51 1020 121287 0.83 122307 52 1060 132336 0.79 133396 53 1124 123536 0.90 124660 54 1048 121981 0.85 123029 55 1045 121698 0.85 122743 56 1174 131991 0.88 133165 57 1040 136444 0.76 137484 58 1132 127190 0.88 128322 59 1162 123886 0.93 125048 60 1022 118966 0.85 119988 61 1082 118954 0.90 120036 62 1033 117910 0.87 118943 63 1037 116183 0.88 117220 64 1063 126796 0.83 127859 65 1076 119015 0.90 120091 66 1045 125965 0.82 127010 67 1034 127916 0.80 128950 68 1133 118263 0.95 119396 69 1014 116965 0.86 117979 70 992 114834 0.86 115826 71 1063 114251 0.92 115314 72 983 113623 0.86 114606 73 1108 112214 0.98 113322 74 1083 112147 0.96 113230 75 979 111646 0.87 112625 76 1047 111780 0.93 112827 77 1077 110449 0.97 111526 78 1003 110835 0.90 111838 79 1010 110078 0.91 111088 80 1039 108617 0.95 109656 81 980 106102 0.92 107082 82 991 105874 0.93 106865 83 1103 106837 1.02 107940 84 1027 115573 0.88 116600 85 917 106104 0.86 107021 86 1010 113070 0.89 114080 87 904 103525 0.87 104429 88 887 103027 0.85 103914 89 948 103063 0.91 104011 90 929 100912 0.91 101841 91 906 100305 0.90 101211 92 970 99145 0.97 100115 93 918 98922 0.92 99840 94 952 96953 0.97 97905 95 1001 97091 1.02 98092 96 958 93618 1.01 94576 97 929 93169 0.99 94098 98 879 87222 1.00 88101 99 581 61470 0.94 62051 100 583 53539 1.08 54122 101 924 93010 0.98 93934 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12193 18855 39.27 31048 2 11142 18336 37.80 29478 3 11677 19759 37.15 31436 4 11455 22854 33.39 34309 5 4700 28354 14.22 33054 6 2664 14055 15.93 16719 7 2473 15600 13.68 18073 8 2512 15739 13.76 18251 9 2371 15010 13.64 17381 10 2515 15043 14.32 17558 11 2740 16810 14.02 19550 12 2726 17191 13.69 19917 13 2691 13461 16.66 16152 14 2939 14982 16.40 17921 15 2787 12311 18.46 15098 16 2655 12356 17.69 15011 17 3178 14088 18.41 17266 18 3057 12452 19.71 15509 19 2972 13098 18.49 16070 20 2845 12411 18.65 15256 21 2885 11416 20.17 14301 22 2986 12071 19.83 15057 23 2730 10932 19.98 13662 24 2745 12494 18.01 15239 25 3122 12146 20.45 15268 26 2640 11680 18.44 14320 27 3244 11463 22.06 14707 28 2691 10148 20.96 12839 29 2759 11465 19.40 14224 30 2640 12128 17.88 14768 31 2589 11191 18.79 13780 32 2491 10263 19.53 12754 33 2670 9959 21.14 12629 34 2765 10733 20.48 13498 35 3074 11382 21.26 14456 36 2689 10857 19.85 13546 37 2722 9697 21.92 12419 38 2518 10026 20.07 12544 39 2506 9718 20.50 12224 40 2704 9741 21.73 12445 41 2513 10614 19.14 13127 42 2539 10592 19.34 13131 43 2443 9293 20.82 11736 44 2337 9220 20.22 11557 45 2719 12263 18.15 14982 46 2255 8506 20.96 10761 47 2375 9083 20.73 11458 48 2305 9262 19.93 11567 49 2293 9591 19.29 11884 50 2204 8453 20.68 10657 51 2148 8078 21.01 10226 52 2243 9843 18.56 12086 53 2150 9516 18.43 11666 54 2144 9360 18.64 11504 55 2298 8862 20.59 11160 56 2110 8609 19.68 10719 57 2223 7961 21.83 10184 58 2081 8133 20.37 10214 59 2005 8296 19.46 10301 60 2045 8266 19.83 10311 61 1816 7773 18.94 9589 62 1857 6925 21.15 8782 63 1842 7281 20.19 9123 64 1885 7163 20.83 9048 65 1837 6174 22.93 8011 66 1796 7254 19.85 9050 67 1874 7846 19.28 9720 68 1915 9460 16.84 11375 69 1692 7306 18.80 8998 70 1785 7077 20.14 8862 71 1757 5964 22.76 7721 72 1709 5772 22.84 7481 73 1642 6077 21.27 7719 74 1514 6177 19.69 7691 75 1501 6303 19.23 7804 76 1529 5917 20.53 7446 77 1516 5875 20.51 7391 78 1510 6123 19.78 7633 79 1438 5363 21.14 6801 80 1429 5278 21.31 6707 81 1439 5527 20.66 6966 82 1431 5454 20.78 6885 83 1461 5066 22.38 6527 84 1557 5359 22.51 6916 85 1379 5162 21.08 6541 86 1356 5213 20.64 6569 87 1410 5218 21.27 6628 88 1435 5206 21.61 6641 89 1435 5176 21.71 6611 90 1454 5217 21.80 6671 91 1338 4721 22.08 6059 92 1294 4698 21.60 5992 93 1347 4748 22.10 6095 94 1382 4647 22.92 6029 95 1322 4619 22.25 5941 96 1221 4686 20.67 5907 97 1311 4537 22.42 5848 98 1165 4202 21.71 5367 99 1108 0 100.00 1108 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4165 22924 15.38 27089 2 4873 25709 15.93 30582 3 4310 24238 15.10 28548 4 4844 25726 15.85 30570 5 286 46559 0.61 46845 6 245 60825 0.40 61070 7 131 30113 0.43 30244 8 177 32370 0.54 32547 9 140 29937 0.47 30077 10 146 29803 0.49 29949 11 180 32717 0.55 32897 12 144 29100 0.49 29244 13 153 32527 0.47 32680 14 132 28453 0.46 28585 15 158 28207 0.56 28365 16 139 25232 0.55 25371 17 200 28828 0.69 29028 18 137 23262 0.59 23399 19 144 23413 0.61 23557 20 123 23468 0.52 23591 21 144 23880 0.60 24024 22 156 26155 0.59 26311 23 124 22890 0.54 23014 24 128 22104 0.58 22232 25 113 21598 0.52 21711 26 122 23427 0.52 23549 27 130 21694 0.60 21824 28 134 22049 0.60 22183 29 124 24256 0.51 24380 30 133 21595 0.61 21728 31 120 20367 0.59 20487 32 122 21164 0.57 21286 33 112 25312 0.44 25424 34 110 20592 0.53 20702 35 134 21171 0.63 21305 36 108 22536 0.48 22644 37 120 21982 0.54 22102 38 121 19853 0.61 19974 39 96 21070 0.45 21166 40 138 20124 0.68 20262 41 126 17814 0.70 17940 42 109 16682 0.65 16791 43 105 17820 0.59 17925 44 93 17996 0.51 18089 45 90 16096 0.56 16186 46 94 16348 0.57 16442 47 104 16214 0.64 16318 48 98 16202 0.60 16300 49 97 16150 0.60 16247 50 104 16591 0.62 16695 51 85 15510 0.55 15595 52 90 15473 0.58 15563 53 101 16202 0.62 16303 54 107 15257 0.70 15364 55 93 15084 0.61 15177 56 83 14891 0.55 14974 57 97 14350 0.67 14447 58 98 15080 0.65 15178 59 82 15667 0.52 15749 60 98 16759 0.58 16857 61 73 14795 0.49 14868 62 73 14353 0.51 14426 63 90 14560 0.61 14650 64 67 13284 0.50 13351 65 85 13772 0.61 13857 66 82 12733 0.64 12815 67 76 13507 0.56 13583 68 82 13114 0.62 13196 69 69 13349 0.51 13418 70 76 13233 0.57 13309 71 75 13466 0.55 13541 72 81 12583 0.64 12664 73 72 12349 0.58 12421 74 71 12531 0.56 12602 75 62 11756 0.52 11818 76 58 11470 0.50 11528 77 68 12373 0.55 12441 78 63 11751 0.53 11814 79 80 11498 0.69 11578 80 55 10950 0.50 11005 81 63 11050 0.57 11113 82 58 10781 0.54 10839 83 56 10974 0.51 11030 84 68 10849 0.62 10917 85 57 11409 0.50 11466 86 51 10339 0.49 10390 87 68 10405 0.65 10473 88 73 10260 0.71 10333 89 70 10717 0.65 10787 90 71 10647 0.66 10718 91 68 10868 0.62 10936 92 55 10356 0.53 10411 93 76 9327 0.81 9403 94 64 9056 0.70 9120 95 58 9362 0.62 9420 96 45 9112 0.49 9157 97 57 9337 0.61 9394 98 42 8561 0.49 8603 99 36 0 100.00 36 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6044 32351 15.74 38395 2 4783 26906 15.09 31689 3 4964 27598 15.24 32562 4 5008 26917 15.69 31925 5 446 50422 0.88 50868 6 479 72422 0.66 72901 7 614 98648 0.62 99262 8 581 98883 0.58 99464 9 593 92780 0.64 93373 10 597 91662 0.65 92259 11 563 88980 0.63 89543 12 581 83434 0.69 84015 13 574 86611 0.66 87185 14 633 87685 0.72 88318 15 540 85348 0.63 85888 16 531 82961 0.64 83492 17 632 82510 0.76 83142 18 575 86691 0.66 87266 19 530 81014 0.65 81544 20 598 88054 0.67 88652 21 493 78853 0.62 79346 22 583 78505 0.74 79088 23 525 76152 0.68 76677 24 504 73033 0.69 73537 25 581 73008 0.79 73589 26 501 72574 0.69 73075 27 519 78134 0.66 78653 28 497 73903 0.67 74400 29 506 72407 0.69 72913 30 497 70736 0.70 71233 31 526 69395 0.75 69921 32 483 70487 0.68 70970 33 483 66799 0.72 67282 34 466 65520 0.71 65986 35 500 67474 0.74 67974 36 475 67737 0.70 68212 37 511 65320 0.78 65831 38 530 71602 0.73 72132 39 457 65773 0.69 66230 40 491 66933 0.73 67424 41 519 65504 0.79 66023 42 467 64351 0.72 64818 43 468 61266 0.76 61734 44 433 61831 0.70 62264 45 464 62571 0.74 63035 46 486 62673 0.77 63159 47 400 62520 0.64 62920 48 417 59362 0.70 59779 49 448 57897 0.77 58345 50 390 57332 0.68 57722 51 364 55528 0.65 55892 52 398 53590 0.74 53988 53 396 53698 0.73 54094 54 374 53105 0.70 53479 55 385 55256 0.69 55641 56 385 53099 0.72 53484 57 362 52847 0.68 53209 58 365 51677 0.70 52042 59 408 50457 0.80 50865 60 376 52415 0.71 52791 61 378 51397 0.73 51775 62 400 48438 0.82 48838 63 341 49054 0.69 49395 64 353 47476 0.74 47829 65 313 47901 0.65 48214 66 345 47297 0.72 47642 67 337 45724 0.73 46061 68 327 46298 0.70 46625 69 302 45645 0.66 45947 70 382 45481 0.83 45863 71 301 45819 0.65 46120 72 355 44271 0.80 44626 73 306 42454 0.72 42760 74 287 42278 0.67 42565 75 341 42573 0.79 42914 76 304 40943 0.74 41247 77 313 40734 0.76 41047 78 290 41226 0.70 41516 79 299 41922 0.71 42221 80 316 40352 0.78 40668 81 304 40174 0.75 40478 82 295 39709 0.74 40004 83 294 38772 0.75 39066 84 286 39248 0.72 39534 85 355 38884 0.90 39239 86 324 39154 0.82 39478 87 288 37506 0.76 37794 88 294 37211 0.78 37505 89 271 36251 0.74 36522 90 270 35770 0.75 36040 91 267 35457 0.75 35724 92 303 36800 0.82 37103 93 259 35573 0.72 35832 94 293 33824 0.86 34117 95 276 33542 0.82 33818 96 213 33047 0.64 33260 97 277 33404 0.82 33681 98 239 31525 0.75 31764 99 145 0 100.00 145