CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 98338 217110 31.17 315448 2 88430 226366 28.09 314796 3 81609 188680 30.19 270289 4 82310 136232 37.66 218542 5 77223 120817 38.99 198040 6 76437 101726 42.90 178163 7 83029 101606 44.97 184635 8 38953 120146 24.48 159099 9 35712 115263 23.65 150975 10 35912 110212 24.58 146124 11 37187 114168 24.57 151355 12 35744 110006 24.52 145750 13 34266 112765 23.31 147031 14 32635 117561 21.73 150196 15 31142 111567 21.82 142709 16 28972 109312 20.95 138284 17 27342 108650 20.11 135992 18 28181 112893 19.98 141074 19 27852 111022 20.06 138874 20 27779 114938 19.46 142717 21 28475 111227 20.38 139702 22 27571 107744 20.38 135315 23 27161 107356 20.19 134517 24 27127 104616 20.59 131743 25 26095 106547 19.67 132642 26 26869 151352 15.08 178221 27 26634 118974 18.29 145608 28 27431 118025 18.86 145456 29 26935 120587 18.26 147522 30 26197 111585 19.01 137782 31 26808 107942 19.89 134750 32 26206 105015 19.97 131221 33 26663 109751 19.55 136414 34 27122 106891 20.24 134013 35 26387 107860 19.66 134247 36 25985 110422 19.05 136407 37 25401 107353 19.13 132754 38 25404 106379 19.28 131783 39 25971 104888 19.85 130859 40 26116 103962 20.08 130078 41 25619 104543 19.68 130162 42 26232 109282 19.36 135514 43 26017 107825 19.44 133842 44 25836 102056 20.20 127892 45 26323 103472 20.28 129795 46 26743 107751 19.88 134494 47 25789 102451 20.11 128240 48 25915 105351 19.74 131266 49 26500 101561 20.69 128061 50 25854 102911 20.08 128765 51 26143 100739 20.60 126882 52 26109 109255 19.29 135364 53 25219 100181 20.11 125400 54 25028 102582 19.61 127610 55 25310 100160 20.17 125470 56 24926 102050 19.63 126976 57 25302 97353 20.63 122655 58 25829 99015 20.69 124844 59 25567 97381 20.79 122948 60 24686 98253 20.08 122939 61 25197 99591 20.19 124788 62 24737 101235 19.64 125972 63 24454 99906 19.66 124360 64 24232 99943 19.51 124175 65 24636 98403 20.02 123039 66 25038 96382 20.62 121420 67 24587 93233 20.87 117820 68 23595 91839 20.44 115434 69 23868 92487 20.51 116355 70 23544 93693 20.08 117237 71 23084 89016 20.59 112100 72 23026 93291 19.80 116317 73 23133 90128 20.42 113261 74 23056 93697 19.75 116753 75 22108 91712 19.42 113820 76 22576 95077 19.19 117653 77 22685 87615 20.57 110300 78 22359 89223 20.04 111582 79 21955 111327 16.47 133282 80 21928 93243 19.04 115171 81 21721 95247 18.57 116968 82 21414 88798 19.43 110212 83 21581 89851 19.37 111432 84 21572 92597 18.89 114169 85 21633 87416 19.84 109049 86 20887 96014 17.87 116901 87 20603 91352 18.40 111955 88 21091 90677 18.87 111768 89 20250 85376 19.17 105626 90 20046 85258 19.04 105304 91 20171 88156 18.62 108327 92 19500 84822 18.69 104322 93 19701 81537 19.46 101238 94 20022 79309 20.16 99331 95 19287 80958 19.24 100245 96 20140 81927 19.73 102067 97 19545 105637 15.61 125182 98 17860 79495 18.35 97355 99 14172 61949 18.62 76121 100 18079 74023 19.63 92102 101 16349 71982 18.51 88331 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 165265 190474 46.46 355739 2 94219 166016 36.21 260235 3 34378 158767 17.80 193145 4 14925 174657 7.87 189582 5 8572 164914 4.94 173486 6 7119 156255 4.36 163374 7 5199 203022 2.50 208221 8 2261 215086 1.04 217347 9 1980 204927 0.96 206907 10 1878 194329 0.96 196207 11 1840 191963 0.95 193803 12 1875 197329 0.94 199204 13 1621 188086 0.85 189707 14 1501 184533 0.81 186034 15 1413 186531 0.75 187944 16 1234 186659 0.66 187893 17 1248 182841 0.68 184089 18 1208 183589 0.65 184797 19 1204 189062 0.63 190266 20 1211 198575 0.61 199786 21 1234 197522 0.62 198756 22 1326 195091 0.68 196417 23 1275 194267 0.65 195542 24 1222 196663 0.62 197885 25 1202 190261 0.63 191463 26 1281 194647 0.65 195928 27 1227 196732 0.62 197959 28 1241 203516 0.61 204757 29 1567 251148 0.62 252715 30 1298 207446 0.62 208744 31 1283 206472 0.62 207755 32 1290 197793 0.65 199083 33 1192 191878 0.62 193070 34 1261 195631 0.64 196892 35 1288 195080 0.66 196368 36 1311 195502 0.67 196813 37 1208 185320 0.65 186528 38 1281 191235 0.67 192516 39 1277 194486 0.65 195763 40 1309 194479 0.67 195788 41 1346 203296 0.66 204642 42 1303 194431 0.67 195734 43 1253 189267 0.66 190520 44 1335 194969 0.68 196304 45 1291 192536 0.67 193827 46 1331 192139 0.69 193470 47 1313 188008 0.69 189321 48 1439 247480 0.58 248919 49 1344 200745 0.67 202089 50 1461 198748 0.73 200209 51 1453 196750 0.73 198203 52 1405 195379 0.71 196784 53 1618 236921 0.68 238539 54 1467 207337 0.70 208804 55 1431 197880 0.72 199311 56 1377 188441 0.73 189818 57 1502 189475 0.79 190977 58 2350 247482 0.94 249832 59 1651 207843 0.79 209494 60 1518 203729 0.74 205247 61 1548 193253 0.79 194801 62 1549 190090 0.81 191639 63 1528 192022 0.79 193550 64 1489 192333 0.77 193822 65 1642 190768 0.85 192410 66 1578 184872 0.85 186450 67 1563 180391 0.86 181954 68 1892 232849 0.81 234741 69 1652 192090 0.85 193742 70 1689 190199 0.88 191888 71 1499 181852 0.82 183351 72 1594 178424 0.89 180018 73 1525 176772 0.86 178297 74 1630 178028 0.91 179658 75 1589 175784 0.90 177373 76 1447 167805 0.85 169252 77 1443 170060 0.84 171503 78 1564 173923 0.89 175487 79 1616 168812 0.95 170428 80 1656 178925 0.92 180581 81 1505 171165 0.87 172670 82 1507 165582 0.90 167089 83 1514 172466 0.87 173980 84 1521 170390 0.88 171911 85 1610 172663 0.92 174273 86 1507 167939 0.89 169446 87 1522 166947 0.90 168469 88 1499 160632 0.92 162131 89 1549 160090 0.96 161639 90 1571 180747 0.86 182318 91 1504 162152 0.92 163656 92 1624 162562 0.99 164186 93 1678 157605 1.05 159283 94 1637 156164 1.04 157801 95 1654 152439 1.07 154093 96 1693 151457 1.11 153150 97 1541 138734 1.10 140275 98 1394 125574 1.10 126968 99 953 82655 1.14 83608 100 978 83454 1.16 84432 101 2245 138115 1.60 140360 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 129246 189819 40.51 319065 2 56731 196389 22.41 253120 3 25209 267013 8.63 292222 4 19970 296530 6.31 316500 5 16988 371020 4.38 388008 6 13699 413429 3.21 427128 7 12209 534580 2.23 546789 8 6972 632531 1.09 639503 9 5417 536554 1.00 541971 10 5086 517046 0.97 522132 11 5643 514315 1.09 519958 12 5032 513473 0.97 518505 13 5392 517446 1.03 522838 14 5287 531313 0.99 536600 15 4992 549520 0.90 554512 16 4903 559439 0.87 564342 17 5534 628226 0.87 633760 18 5065 611576 0.82 616641 19 4831 607266 0.79 612097 20 5167 612899 0.84 618066 21 4990 614751 0.81 619741 22 5128 607850 0.84 612978 23 5301 619318 0.85 624619 24 5266 676778 0.77 682044 25 5242 636876 0.82 642118 26 5379 655973 0.81 661352 27 5099 645461 0.78 650560 28 5064 643382 0.78 648446 29 5409 638208 0.84 643617 30 4995 627722 0.79 632717 31 4821 619605 0.77 624426 32 5343 619605 0.85 624948 33 4883 618555 0.78 623438 34 5204 621615 0.83 626819 35 5376 626432 0.85 631808 36 5178 686857 0.75 692035 37 5301 648252 0.81 653553 38 5429 648882 0.83 654311 39 5206 696398 0.74 701604 40 5305 640141 0.82 645446 41 5515 630670 0.87 636185 42 5364 677365 0.79 682729 43 5548 630045 0.87 635593 44 5996 686532 0.87 692528 45 5614 685277 0.81 690891 46 5679 698384 0.81 704063 47 5528 654501 0.84 660029 48 5278 646160 0.81 651438 49 5220 630285 0.82 635505 50 5487 620098 0.88 625585 51 5162 609484 0.84 614646 52 5359 662808 0.80 668167 53 5432 616752 0.87 622184 54 5155 609363 0.84 614518 55 5261 609705 0.86 614966 56 5623 658365 0.85 663988 57 5264 684692 0.76 689956 58 6781 631382 1.06 638163 59 5703 620741 0.91 626444 60 5016 596623 0.83 601639 61 5295 593968 0.88 599263 62 5357 587579 0.90 592936 63 5028 581565 0.86 586593 64 5346 634414 0.84 639760 65 5324 593374 0.89 598698 66 5157 632177 0.81 637334 67 5210 641728 0.81 646938 68 5440 595468 0.91 600908 69 5011 585595 0.85 590606 70 4986 571931 0.86 576917 71 5422 573074 0.94 578496 72 5016 569092 0.87 574108 73 5276 562456 0.93 567732 74 5303 562281 0.93 567584 75 4909 554978 0.88 559887 76 4963 558222 0.88 563185 77 5291 553779 0.95 559070 78 4789 551119 0.86 555908 79 4876 550740 0.88 555616 80 5131 543884 0.93 549015 81 4856 531301 0.91 536157 82 4951 530732 0.92 535683 83 5212 535134 0.96 540346 84 4979 579998 0.85 584977 85 4708 530432 0.88 535140 86 4945 565658 0.87 570603 87 4466 518245 0.85 522711 88 4470 514756 0.86 519226 89 4786 513787 0.92 518573 90 4563 503999 0.90 508562 91 4488 498917 0.89 503405 92 4672 495479 0.93 500151 93 4769 493690 0.96 498459 94 4682 488043 0.95 492725 95 4835 484044 0.99 488879 96 4578 471157 0.96 475735 97 4446 463671 0.95 468117 98 4381 433242 1.00 437623 99 2988 305801 0.97 308789 100 2887 266983 1.07 269870 101 4598 464641 0.98 469239 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60193 93916 39.06 154109 2 55448 92113 37.58 147561 3 58673 98806 37.26 157479 4 57187 112718 33.66 169905 5 23108 141449 14.04 164557 6 13368 71079 15.83 84447 7 12247 77391 13.66 89638 8 12587 78580 13.81 91167 9 11797 74162 13.72 85959 10 12993 74810 14.80 87803 11 13918 83861 14.23 97779 12 13799 86135 13.81 99934 13 13772 67389 16.97 81161 14 14533 74799 16.27 89332 15 13930 61270 18.52 75200 16 13608 61947 18.01 75555 17 15934 70694 18.39 86628 18 15293 62564 19.64 77857 19 14991 65620 18.60 80611 20 14139 61775 18.63 75914 21 14784 56954 20.61 71738 22 14749 59994 19.73 74743 23 13710 55015 19.95 68725 24 13770 62421 18.07 76191 25 15965 60967 20.75 76932 26 13518 58221 18.84 71739 27 15973 56238 22.12 72211 28 13610 50273 21.30 63883 29 13678 56435 19.51 70113 30 13349 59978 18.20 73327 31 12791 54999 18.87 67790 32 12366 50739 19.60 63105 33 13484 49776 21.32 63260 34 13385 53803 19.92 67188 35 15309 56173 21.42 71482 36 13287 54355 19.64 67642 37 13270 49114 21.27 62384 38 12421 49984 19.90 62405 39 12734 48193 20.90 60927 40 13356 48753 21.50 62109 41 12239 52554 18.89 64793 42 12545 52263 19.36 64808 43 12343 47460 20.64 59803 44 11707 46250 20.20 57957 45 13603 60326 18.40 73929 46 11427 42937 21.02 54364 47 11655 44777 20.65 56432 48 11636 46770 19.92 58406 49 11267 47661 19.12 58928 50 10799 42576 20.23 53375 51 10805 40337 21.13 51142 52 11008 49004 18.34 60012 53 10924 46718 18.95 57642 54 10930 46397 19.07 57327 55 11080 43205 20.41 54285 56 10251 42402 19.47 52653 57 10932 39889 21.51 50821 58 10324 40450 20.33 50774 59 9919 40747 19.58 50666 60 10216 40769 20.04 50985 61 9045 39075 18.80 48120 62 9225 34786 20.96 44011 63 9444 35922 20.82 45366 64 9292 35435 20.77 44727 65 9079 31348 22.46 40427 66 9570 35607 21.18 45177 67 8956 39033 18.66 47989 68 9292 47135 16.47 56427 69 8662 36547 19.16 45209 70 8536 35166 19.53 43702 71 8590 29548 22.52 38138 72 8249 28976 22.16 37225 73 8151 29848 21.45 37999 74 7668 30763 19.95 38431 75 8026 31813 20.15 39839 76 7679 29422 20.70 37101 77 7679 28711 21.10 36390 78 7665 31027 19.81 38692 79 7264 26738 21.36 34002 80 7197 26317 21.47 33514 81 7152 27538 20.62 34690 82 7041 27428 20.43 34469 83 7186 24640 22.58 31826 84 7577 26616 22.16 34193 85 7050 25940 21.37 32990 86 6818 25644 21.00 32462 87 6785 25618 20.94 32403 88 6904 25996 20.98 32900 89 6942 25589 21.34 32531 90 6923 25357 21.45 32280 91 6760 23362 22.44 30122 92 6423 23345 21.58 29768 93 6615 23412 22.03 30027 94 6815 23222 22.69 30037 95 6549 23035 22.14 29584 96 6146 23216 20.93 29362 97 6645 22736 22.62 29381 98 5828 20634 22.02 26462 99 5259 0 100.00 5259 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21356 115622 15.59 136978 2 24169 127383 15.95 151552 3 21112 120771 14.88 141883 4 24037 129284 15.68 153321 5 1400 231791 0.60 233191 6 1227 303322 0.40 304549 7 697 150656 0.46 151353 8 776 162662 0.47 163438 9 700 150230 0.46 150930 10 774 148520 0.52 149294 11 900 163549 0.55 164449 12 743 144980 0.51 145723 13 818 161763 0.50 162581 14 726 141737 0.51 142463 15 745 141127 0.53 141872 16 712 125681 0.56 126393 17 950 143395 0.66 144345 18 675 115563 0.58 116238 19 705 117128 0.60 117833 20 616 117022 0.52 117638 21 695 120256 0.57 120951 22 705 131318 0.53 132023 23 626 114470 0.54 115096 24 657 109907 0.59 110564 25 589 108243 0.54 108832 26 647 117331 0.55 117978 27 637 107689 0.59 108326 28 668 110423 0.60 111091 29 661 121553 0.54 122214 30 621 107921 0.57 108542 31 621 101771 0.61 102392 32 615 106874 0.57 107489 33 663 126456 0.52 127119 34 569 103343 0.55 103912 35 625 106843 0.58 107468 36 596 112415 0.53 113011 37 577 109962 0.52 110539 38 597 98000 0.61 98597 39 547 105126 0.52 105673 40 617 101096 0.61 101713 41 552 87993 0.62 88545 42 512 83572 0.61 84084 43 514 89723 0.57 90237 44 487 90682 0.53 91169 45 496 79960 0.62 80456 46 488 81233 0.60 81721 47 523 82217 0.63 82740 48 485 81139 0.59 81624 49 492 80652 0.61 81144 50 451 82800 0.54 83251 51 444 77251 0.57 77695 52 453 76667 0.59 77120 53 479 81282 0.59 81761 54 506 75863 0.66 76369 55 478 74575 0.64 75053 56 455 74662 0.61 75117 57 442 71542 0.61 71984 58 491 75252 0.65 75743 59 432 77376 0.56 77808 60 459 82342 0.55 82801 61 441 73732 0.59 74173 62 438 71518 0.61 71956 63 456 71788 0.63 72244 64 346 64860 0.53 65206 65 446 69067 0.64 69513 66 384 62913 0.61 63297 67 382 67463 0.56 67845 68 426 66581 0.64 67007 69 368 66111 0.55 66479 70 362 64836 0.56 65198 71 393 66963 0.58 67356 72 360 62843 0.57 63203 73 337 61012 0.55 61349 74 341 62468 0.54 62809 75 325 58804 0.55 59129 76 317 57020 0.55 57337 77 353 60602 0.58 60955 78 363 58496 0.62 58859 79 375 57537 0.65 57912 80 303 55332 0.54 55635 81 349 54349 0.64 54698 82 331 53203 0.62 53534 83 321 54602 0.58 54923 84 351 53170 0.66 53521 85 296 56244 0.52 56540 86 307 51186 0.60 51493 87 325 51448 0.63 51773 88 328 51108 0.64 51436 89 370 53493 0.69 53863 90 341 53031 0.64 53372 91 296 53553 0.55 53849 92 276 50929 0.54 51205 93 339 46218 0.73 46557 94 293 45400 0.64 45693 95 295 46130 0.64 46425 96 259 45714 0.56 45973 97 307 45830 0.67 46137 98 229 42918 0.53 43147 99 158 0 100.00 158 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30358 162022 15.78 192380 2 23921 133421 15.20 157342 3 24508 137356 15.14 161864 4 24578 133019 15.60 157597 5 2327 251830 0.92 254157 6 2426 360524 0.67 362950 7 3028 491438 0.61 494466 8 2858 493970 0.58 496828 9 3001 462943 0.64 465944 10 2922 457409 0.63 460331 11 2794 444452 0.62 447246 12 2858 412946 0.69 415804 13 2823 432954 0.65 435777 14 3022 435872 0.69 438894 15 2731 427214 0.64 429945 16 2633 414485 0.63 417118 17 2902 412030 0.70 414932 18 2940 433550 0.67 436490 19 2695 404504 0.66 407199 20 2960 439212 0.67 442172 21 2618 391819 0.66 394437 22 2871 389927 0.73 392798 23 2642 377304 0.70 379946 24 2450 365735 0.67 368185 25 2635 364408 0.72 367043 26 2438 362277 0.67 364715 27 2715 387966 0.69 390681 28 2587 370404 0.69 372991 29 2454 361148 0.67 363602 30 2419 350690 0.69 353109 31 2490 346031 0.71 348521 32 2313 350274 0.66 352587 33 2413 331380 0.72 333793 34 2227 327540 0.68 329767 35 2449 334067 0.73 336516 36 2398 338464 0.70 340862 37 2468 325869 0.75 328337 38 2604 354729 0.73 357333 39 2276 326880 0.69 329156 40 2422 333891 0.72 336313 41 2365 326510 0.72 328875 42 2405 320832 0.74 323237 43 2290 307497 0.74 309787 44 2108 306722 0.68 308830 45 2333 310636 0.75 312969 46 2361 312422 0.75 314783 47 2086 310036 0.67 312122 48 2159 296354 0.72 298513 49 2146 286761 0.74 288907 50 2024 284017 0.71 286041 51 1934 276315 0.70 278249 52 1841 263268 0.69 265109 53 1969 267711 0.73 269680 54 1887 264364 0.71 266251 55 1822 274555 0.66 276377 56 1859 263304 0.70 265163 57 1824 263611 0.69 265435 58 1784 255882 0.69 257666 59 1939 251826 0.76 253765 60 1832 261187 0.70 263019 61 1774 255428 0.69 257202 62 1786 240898 0.74 242684 63 1702 243599 0.69 245301 64 1701 235872 0.72 237573 65 1677 237148 0.70 238825 66 1666 232865 0.71 234531 67 1663 226646 0.73 228309 68 1679 230271 0.72 231950 69 1552 227328 0.68 228880 70 1685 225250 0.74 226935 71 1513 227263 0.66 228776 72 1681 219631 0.76 221312 73 1513 212884 0.71 214397 74 1408 210774 0.66 212182 75 1612 211323 0.76 212935 76 1491 204847 0.72 206338 77 1573 202609 0.77 204182 78 1417 204133 0.69 205550 79 1520 208627 0.72 210147 80 1476 201357 0.73 202833 81 1525 199494 0.76 201019 82 1398 196034 0.71 197432 83 1374 193453 0.71 194827 84 1408 194992 0.72 196400 85 1558 194163 0.80 195721 86 1669 193766 0.85 195435 87 1444 185900 0.77 187344 88 1376 185290 0.74 186666 89 1284 180105 0.71 181389 90 1336 177901 0.75 179237 91 1259 177049 0.71 178308 92 1327 182182 0.72 183509 93 1254 175198 0.71 176452 94 1377 168845 0.81 170222 95 1291 165262 0.78 166553 96 1155 164050 0.70 165205 97 1297 165191 0.78 166488 98 1007 155297 0.64 156304 99 697 0 100.00 697