/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 23:13 on 2019-02-23
Alignment
Sequence pairs analysed in total
10000000
Paired-end alignments with a unique best hit
5563286
Pairs without alignments under any condition
2763173
Pairs that did not map uniquely
1673541
Genomic sequence context not extractable (edges of chromosomes)
6546
Cytosine Methylation
Total C's analysed
179881287
Methylated C's in CpG context
5505895
Methylated C's in CHG context
790770
Methylated C's in CHH context
1394185
Methylated C's in Unknown context
23384
Unmethylated C's in CpG context
20691873
Unmethylated C's in CHG context
37644984
Unmethylated C's in CHH context
113853580
Unmethylated C's in Unknown context
346364
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2766950
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2789790
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions