Bowtie seems to be working fine (tested command '/gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64/bowtie2 --version' [2.3.4]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/gscratch/srlab/programs/samtools-1.9/samtools' Reference genome folder provided is /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/ (absolute path is '/gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/)' Processing sequences up to read no. 1000000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Input files to be analysed (in current folder '/gscratch/scrubbed/samwhite/outputs/20190222_geo_rrbs_bismark/subset_Pgenerosa_v070_1000000'): /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz Library is assumed to be strand-specific (directional), alignments to strands complementary to the original top or bottom strands will be ignored (i.e. not performed!) Setting parallelization to single-threaded (default) Current working directory is: /gscratch/scrubbed/samwhite/outputs/20190222_geo_rrbs_bismark/subset_Pgenerosa_v070_1000000 Now reading in and storing sequence information of the genome specified in: /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/ Single-core mode: setting pid to 1 Paired-end alignments will be performed ======================================= The provided filenames for paired-end alignments are /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz Input files are in FastQ format Processing reads up to sequence no. 1000000 from /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz Writing a C -> T converted version of the input file pgen_bsseq_all_R1.fastq.gz to pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq Created C -> T converted version of the FastQ file pgen_bsseq_all_R1.fastq.gz (1000001 sequences in total) Processing reads up to sequence no. 1000000 from /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz Writing a G -> A converted version of the input file pgen_bsseq_all_R2.fastq.gz to pgen_bsseq_all_R2.fastq.gz_G_to_A.fastq Created G -> A converted version of the FastQ file pgen_bsseq_all_R2.fastq.gz (1000001 sequences in total) Input files are pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq and pgen_bsseq_all_R2.fastq.gz_G_to_A.fastq (FastQ) Now running 2 instances of Bowtie 2 against the bisulfite genome of /gscratch/scrubbed/samwhite/data/P_generosa/Pgenerosa_v070/ with the specified options: -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 Now starting a Bowtie 2 paired-end alignment for CTread1GAread2CTgenome (reading in sequences from pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq and pgen_bsseq_all_R2.fastq.gz_G_to_A.fastq, with the options: -q --score-min L,0,-0.6 -p 28 --reorder --ignore-quals --no-mixed --no-discordant --dovetail --maxins 500 --norc)) Found first alignment: SL-HBW:624:CAAWVANXX:5:2301:1512:1956_1:N:0:ATCACG/1 99 PGA_scaffold25235__1_contigs__length_1316_CT_converted 580 1 50M = 580 -50 NGTTTATATGTATGTATTATATTTGTGTAGGTATTGTATTTGATAAGGAT #<<>> Writing bisulfite mapping results to pgen_bsseq_all_R1_bismark_bt2_pe.bam <<< Reading in the sequence files /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11623:2069_1:N:0:ATCACG PGA_scaffold32732__1_contigs__length_2240 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15086:2208_1:N:0:ATCACG PGA_scaffold41319__1_contigs__length_1135 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17208:2040_1:N:0:ATCACG PGA_scaffold71178__1_contigs__length_4197 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13969:2647_1:N:0:ATCACG PGA_scaffold23407__1_contigs__length_2192 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1609:3036_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14032:3053_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7726:3624_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3973:3828_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4047:4144_1:N:0:ATCACG PGA_scaffold45488__1_contigs__length_1333 1237 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4971:4235_1:N:0:ATCACG PGA_scaffold52424__1_contigs__length_3527 3429 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12517:4131_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17368:4030_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15997:4377_1:N:0:ATCACG PGA_scaffold67771__1_contigs__length_6483 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14831:4639_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3873:7275_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6490:8347_1:N:0:ATCACG PGA_scaffold11450__1_contigs__length_1253 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12727:9121_1:N:0:ATCACG PGA_scaffold65325__1_contigs__length_12743 12649 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15388:9040_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6448:9781_1:N:0:ATCACG PGA_scaffold19151__1_contigs__length_2082 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12198:10107_1:N:0:ATCACG PGA_scaffold14256__1_contigs__length_1778 1704 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4811:11102_1:N:0:ATCACG PGA_scaffold30804__1_contigs__length_2641 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12417:11389_1:N:0:ATCACG PGA_scaffold37296__1_contigs__length_1012 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14680:11988_1:N:0:ATCACG PGA_scaffold34510__1_contigs__length_1314 1225 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4623:12077_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13701:12308_1:N:0:ATCACG PGA_scaffold45254__1_contigs__length_1291 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19459:12814_1:N:0:ATCACG PGA_scaffold25165__1_contigs__length_2707 2611 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20626:13308_1:N:0:ATCACG PGA_scaffold61583__1_contigs__length_13650 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9364:13583_1:N:0:ATCACG PGA_scaffold19863__1_contigs__length_1761 1669 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20762:13651_1:N:0:ATCACG PGA_scaffold1564__1_contigs__length_1666 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9736:14242_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:16275:14515_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1085 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19467:15122_1:N:0:ATCACG PGA_scaffold36490__1_contigs__length_5243 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20447:15349_1:N:0:ATCACG PGA_scaffold9226__1_contigs__length_1034 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14907:16248_1:N:0:ATCACG PGA_scaffold56753__1_contigs__length_3010 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15434:16045_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798926 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7616:16737_1:N:0:GTCACG PGA_scaffold24917__1_contigs__length_1507 1415 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13314:17737_1:N:0:ATCACG PGA_scaffold32803__1_contigs__length_2645 2555 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5113:17810_1:N:0:ATCACG PGA_scaffold48397__1_contigs__length_20908 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7001:20835_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12053:21375_1:N:0:ATCACG PGA_scaffold34208__1_contigs__length_2237 2144 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4699:21694_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1087 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20362:21666_1:N:0:ATCACG PGA_scaffold71472__1_contigs__length_4043 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3979:21903_1:N:0:ATCACG PGA_scaffold50821__1_contigs__length_2343 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6493:23041_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6749:23611_1:N:0:ATCACG PGA_scaffold51538__1_contigs__length_9641 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11861:23521_1:N:0:ATCACG PGA_scaffold71988__1_contigs__length_4570 4471 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5886:24241_1:N:0:ATCACG PGA_scaffold30867__1_contigs__length_1516 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11558:24481_1:N:0:ATCACG PGA_scaffold43189__1_contigs__length_2819 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7504:24810_1:N:0:ATCACG PGA_scaffold22606__1_contigs__length_4570 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19744:25783_1:N:0:ATCACG PGA_scaffold67542__1_contigs__length_23105 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12371:26365_1:N:0:ATCACG PGA_scaffold955__1_contigs__length_1266 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3323:26853_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1977:27635_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1834:27730_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10862:27989_1:N:0:ATCACG PGA_scaffold2516__1_contigs__length_2719 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19571:31179_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6874:31573_1:N:0:ATCACG PGA_scaffold14495__1_contigs__length_1124 1025 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11200:31541_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3159:31974_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13870:31760_1:N:0:ATCACG PGA_scaffold71873__1_contigs__length_8186 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5855:32292_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7972:32861_1:N:0:AACACG PGA_scaffold25592__1_contigs__length_1155 1059 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4156:34487_1:N:0:ATCACG PGA_scaffold718__1_contigs__length_989392 989315 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:18692:34381_1:N:0:ATCACG PGA_scaffold59977__1_contigs__length_1141 1043 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10665:34864_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11790:36217_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5437:36841_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14829:36769_1:N:0:ATCACG PGA_scaffold48911__1_contigs__length_1808 1707 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14324:37124_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:2101:37716_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1316:38991_1:N:0:ATCACG PGA_scaffold259769__1_contigs__length_1744 1658 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17418:40568_1:N:0:ATCACG PGA_scaffold56216__1_contigs__length_1445 1354 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17480:40958_1:N:0:ATCACG PGA_scaffold38848__1_contigs__length_1094 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:8443:41491_1:N:0:ATCACG PGA_scaffold31185__1_contigs__length_1433 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15029:41867_1:N:0:ATCACG PGA_scaffold2416__1_contigs__length_3481 3391 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13775:42754_1:N:0:ATCACG PGA_scaffold35412__1_contigs__length_2376 2284 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4591:43018_1:N:0:ATCACG PGA_scaffold304912__1_contigs__length_1731 1630 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15869:43273_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1419:44486_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4210:44750_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4873:44657_1:N:0:ATCACG PGA_scaffold12622__1_contigs__length_2849 2750 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4479:45035_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4184:47037_1:N:0:ATCACG PGA_scaffold5839__1_contigs__length_1041 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10957:47064_1:N:0:ATCACG PGA_scaffold71478__1_contigs__length_4197 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14591:47734_1:N:0:ATCACG PGA_scaffold73092__1_contigs__length_8564 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17699:47602_1:N:0:ATCACG PGA_scaffold61692__1_contigs__length_6562 6465 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:16038:48486_1:N:0:ATCACG PGA_scaffold17225__1_contigs__length_1255 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:18012:48374_1:N:0:ATCACG PGA_scaffold71790__1_contigs__length_1978 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:21106:48323_1:N:0:ATCACG PGA_scaffold47144__1_contigs__length_1542 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9333:50092_1:N:0:ATCACG PGA_scaffold200540__1_contigs__length_1008 932 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11392:50565_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17882:51731_1:N:0:ATCACG PGA_scaffold11999__1_contigs__length_1106 1013 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19654:51988_1:N:0:ATCACG PGA_scaffold72572__1_contigs__length_10914 10817 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10934:52441_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20120:52719_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13220:53499_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798925 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9269:53509_1:N:0:ATCACG PGA_scaffold71823__1_contigs__length_4781 4694 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17173:54382_1:N:0:ATCACG PGA_scaffold2268__1_contigs__length_1115 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3717:54626_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19470:54849_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6417:55494_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798926 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12261:55276_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9171:56913_1:N:0:ATCACG PGA_scaffold44807__1_contigs__length_6413 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14325:57744_1:N:0:ATCACG PGA_scaffold11716__1_contigs__length_4918 4827 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5992:57751_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13118:57835_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14403:59437_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3269:59533_1:N:0:ATCACG PGA_scaffold19606__1_contigs__length_3441 3345 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:8264:61818_1:N:0:ATCACG PGA_scaffold26918__1_contigs__length_2211 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:17936:62304_1:N:0:ATCACG PGA_scaffold51815__1_contigs__length_2058 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5229:62868_1:N:0:ATCACG PGA_scaffold6577__1_contigs__length_5915 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:18114:63590_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:12256:64747_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19152:65486_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:14112:66096_1:N:0:ATCACG PGA_scaffold47727__1_contigs__length_1041 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6165:67152_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9489:67390_1:N:0:ATCACG PGA_scaffold71843__1_contigs__length_9746 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15544:67398_1:N:0:ATCACG PGA_scaffold48444__1_contigs__length_1488 1390 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7597:67757_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3357:68481_1:N:0:ATCACG PGA_scaffold52573__1_contigs__length_6599 6501 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13324:70925_1:N:0:ATCACG PGA_scaffold15343__1_contigs__length_1664 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10868:72754_1:N:0:ATCACG PGA_scaffold31553__1_contigs__length_1536 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9726:76737_1:N:0:ATCACG PGA_scaffold32302__1_contigs__length_3672 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10442:76898_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11389:76804_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19568:76981_1:N:0:ATCACG PGA_scaffold26561__1_contigs__length_2654 2557 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4639:77748_1:N:0:ATCACG PGA_scaffold20815__1_contigs__length_1035 937 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10580:78000_1:N:0:ATCACG PGA_scaffold43086__1_contigs__length_1587 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19574:78139_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9218:78409_1:N:0:ATCACG PGA_scaffold60718__1_contigs__length_9365 9268 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:1794:79104_1:N:0:ATCACG PGA_scaffold64242__1_contigs__length_4463 4364 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13183:79132_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9521:80297_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:13691:80511_1:N:0:ATCACG PGA_scaffold45306__1_contigs__length_4599 4504 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:3328:81619_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7413:82454_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:2147:82634_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19147:82724_1:N:0:ATCACG PGA_scaffold11795__1_contigs__length_2325 2232 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:6181:83001_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15212:83388_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15488:85331_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:16172:85307_1:N:0:ATCACG PGA_scaffold1826__1_contigs__length_1085 986 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9300:85572_1:N:0:ATCACG PGA_scaffold30804__1_contigs__length_2641 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9792:85978_1:N:0:ATCACG PGA_scaffold38376__1_contigs__length_3809 3754 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:18795:85865_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:4993:86839_1:N:0:ATCACG PGA_scaffold261067__1_contigs__length_1024 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:18071:87456_1:N:0:ATCACG PGA_scaffold51107__1_contigs__length_1707 1620 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:16622:87956_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10919:88251_1:N:0:ATCACG PGA_scaffold54741__1_contigs__length_2470 2378 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20298:88315_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798926 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:8279:91282_1:N:0:ATCACG PGA_scaffold35705__1_contigs__length_2009 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:8650:94304_1:N:0:ATCACG PGA_scaffold33858__1_contigs__length_1125 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11318:94263_1:N:0:ATCACG PGA_scaffold59300__1_contigs__length_6746 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:5880:95163_1:N:0:ATCACG PGA_scaffold45889__1_contigs__length_3836 3746 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11486:95295_1:N:0:ATCACG PGA_scaffold67742__1_contigs__length_1600 1508 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:9231:96450_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:15151:96847_1:N:0:ATCACG PGA_scaffold240645__1_contigs__length_1308 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:11860:98087_1:N:0:ATCACG PGA_scaffold68968__1_contigs__length_28899 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:19038:98024_1:N:0:ATCACG PGA_scaffold1146__1_contigs__length_1066 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:7073:99028_1:N:0:ATCACG PGA_scaffold26966__1_contigs__length_6270 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:20403:100066_1:N:0:ATCACG PGA_scaffold3305__1_contigs__length_2675 2580 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2301:10373:100862_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:12533:2329_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19534:2992_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16811:3185_1:N:0:ATCACG PGA_scaffold63395__1_contigs__length_9209 9119 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6249:3692_1:N:0:ATCACG PGA_scaffold32403__1_contigs__length_2511 2411 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15641:3757_1:N:0:ATCACG PGA_scaffold290947__1_contigs__length_6787 6688 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9555:5478_1:N:0:ATCACG PGA_scaffold15845__1_contigs__length_13793 13701 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16955:7587_1:N:0:ATCACG PGA_scaffold29359__1_contigs__length_8307 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17169:7826_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:7453:8930_1:N:0:ATCACG PGA_scaffold2124__1_contigs__length_1167 1072 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9223:8781_1:N:0:ATCACG PGA_scaffold25330__1_contigs__length_1946 1849 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5103:12122_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17444:12957_1:N:0:ATCACG PGA_scaffold55830__1_contigs__length_2500 2411 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10698:14060_1:N:0:ATCACG PGA_scaffold70484__1_contigs__length_1579 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20148:15215_1:N:0:ATCACG PGA_scaffold50593__1_contigs__length_7492 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15402:15470_1:N:0:ATCACG PGA_scaffold70484__1_contigs__length_1579 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:12420:17869_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9160:18281_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19748:18521_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:13330:19002_1:N:0:ATTACG PGA_scaffold19684__1_contigs__length_1235 1183 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17613:20332_1:N:0:ATCACG PGA_scaffold20510__1_contigs__length_12130 12030 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15046:21221_1:N:0:ATCACG PGA_scaffold69349__1_contigs__length_22993 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14301:21559_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8852:22850_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20367:23292_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20570:23348_1:N:0:ATCACG PGA_scaffold62114__1_contigs__length_4676 4579 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16810:23592_1:N:0:ATCACG PGA_scaffold45254__1_contigs__length_1291 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:13093:24131_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20479:24779_1:N:0:ATCACG PGA_scaffold13912__1_contigs__length_3329 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5534:25821_1:N:0:ATCACG PGA_scaffold41470__1_contigs__length_1243 1149 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14563:26025_1:N:0:ATCACG PGA_scaffold37130__1_contigs__length_1146 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8620:28439_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16200:28469_1:N:0:GTCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15886:28510_1:N:0:ATCACG PGA_scaffold16981__1_contigs__length_6088 5989 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11189:29532_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6736:32981_1:N:0:ATCACG PGA_scaffold16152__1_contigs__length_2981 2882 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11250:33086_1:N:0:ATCACG PGA_scaffold22811__1_contigs__length_1003 902 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5900:33644_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1365:34113_1:N:0:ATCACG PGA_scaffold32599__1_contigs__length_1670 1575 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16070:35494_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:12877:36967_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10960:38529_1:N:0:ATCACG PGA_scaffold2878__1_contigs__length_1507 1406 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19835:39416_1:N:0:ATCACG PGA_scaffold26101__1_contigs__length_2017 1921 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1727:40471_1:N:0:ATCACG PGA_scaffold55991__1_contigs__length_1093 997 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20279:40693_1:N:0:ATCACG PGA_scaffold51244__1_contigs__length_2261 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:13368:41203_1:N:0:ATCACG PGA_scaffold14436__1_contigs__length_1387 1323 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:4144:42189_1:N:0:ATCACG PGA_scaffold38882__1_contigs__length_1565 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14179:42955_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:3496:43657_1:N:0:ATCACG PGA_scaffold29430__1_contigs__length_1478 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14761:44750_1:N:0:ATCACG PGA_scaffold32403__1_contigs__length_2511 2411 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10684:45304_1:N:0:AACACG PGA_scaffold33344__1_contigs__length_1604 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5371:45503_1:N:0:ATCACG PGA_scaffold45334__1_contigs__length_1842 1745 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9952:45506_1:N:0:ATCACG PGA_scaffold45306__1_contigs__length_4599 4501 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:18882:46860_1:N:0:ATCACG PGA_scaffold7168__1_contigs__length_1398 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:7122:47640_1:N:0:ATCACG PGA_scaffold17490__1_contigs__length_1309 1211 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9920:47990_1:N:0:ATCACG PGA_scaffold57422__1_contigs__length_21905 21807 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9531:48233_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:2602:48508_1:N:0:ATCACG PGA_scaffold42004__1_contigs__length_1281 1186 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10231:49684_1:N:0:ATCACG PGA_scaffold35239__1_contigs__length_5873 5773 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17005:49851_1:N:0:ATCACG PGA_scaffold14495__1_contigs__length_1124 1026 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14788:52898_1:N:0:ATCACG PGA_scaffold33019__1_contigs__length_2640 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9191:53249_1:N:0:ATCACG PGA_scaffold15193__1_contigs__length_1344 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5627:54173_1:N:0:ATCACG PGA_scaffold1738__1_contigs__length_1663 1565 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10641:54471_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:12635:55086_1:N:0:ATCACG PGA_scaffold600__1_contigs__length_3160 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8286:55759_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:20097:55818_1:N:0:ATCACG PGA_scaffold32302__1_contigs__length_3672 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9588:56395_1:N:0:ATCACG PGA_scaffold34691__1_contigs__length_1006 916 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1514:58324_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17683:58436_1:N:0:ATCACG PGA_scaffold66868__1_contigs__length_2274 2173 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1430:59681_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:7308:60956_1:N:0:ATCACG PGA_scaffold50673__1_contigs__length_1711 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14877:61279_1:N:0:ATCACG PGA_scaffold67336__1_contigs__length_15214 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:13414:61968_1:N:0:ATCACG PGA_scaffold64553__1_contigs__length_3217 3122 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:3281:62272_1:N:0:ATCACG PGA_scaffold35705__1_contigs__length_2009 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:4838:62870_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:17757:63199_1:N:0:ATCACG PGA_scaffold69659__1_contigs__length_2970 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19371:63360_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6302:65236_1:N:0:ATCACG PGA_scaffold34601__1_contigs__length_1043 956 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11964:65208_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15520:65730_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:3665:66461_1:N:0:ATCACG PGA_scaffold31199__1_contigs__length_2911 2819 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19952:68417_1:N:0:ATCACG PGA_scaffold26101__1_contigs__length_2017 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:18899:69268_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8116:69592_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11253:70246_1:N:0:ATCACG PGA_scaffold35093__1_contigs__length_1923 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6789:71349_1:N:0:ATCACG PGA_scaffold157384__1_contigs__length_5567 5474 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14396:71434_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:13743:72629_1:N:0:ATCACG PGA_scaffold23848__1_contigs__length_2302 2206 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6071:73121_1:N:0:ATCACG PGA_scaffold25202__1_contigs__length_1156 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6942:73017_1:N:0:ATCACG PGA_scaffold16016__1_contigs__length_12541 12443 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:12802:73186_1:N:0:ATCACG PGA_scaffold56753__1_contigs__length_3010 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:7098:74463_1:N:0:ATCACG PGA_scaffold184062__1_contigs__length_5550 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1907:74783_1:N:0:ATCACG PGA_scaffold303430__1_contigs__length_2178 2084 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:14580:75541_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15614:76257_1:N:0:ATCACG PGA_scaffold5248__1_contigs__length_2420 2324 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16674:78112_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10663:78403_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:6977:80902_1:N:0:ATCACG PGA_scaffold42006__1_contigs__length_1695 1599 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:18816:80981_1:N:0:ATCACG PGA_scaffold17225__1_contigs__length_1255 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9978:81185_1:N:0:ATCACG PGA_scaffold70909__1_contigs__length_2936 2851 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:4984:81421_1:N:0:ATCACG PGA_scaffold13222__1_contigs__length_1862 1764 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:16541:81879_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9818:82529_1:N:0:ATCACG PGA_scaffold59169__1_contigs__length_14356 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19182:84543_1:N:0:ATCACG PGA_scaffold59192__1_contigs__length_14185 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1114:86246_1:N:0:ATCACG PGA_scaffold19498__1_contigs__length_3093 2995 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5972:86568_1:N:0:ATCACG PGA_scaffold69599__1_contigs__length_2823 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11512:86664_1:N:0:ATCACG PGA_scaffold58745__1_contigs__length_9856 9765 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9827:89829_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:11217:91219_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:18366:93170_1:N:0:ATCACG PGA_scaffold37332__1_contigs__length_1113 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:18364:93308_1:N:0:ATCACG PGA_scaffold35187__1_contigs__length_3059 2959 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19407:93355_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8414:93687_1:N:0:ATCACG PGA_scaffold43611__1_contigs__length_18859 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:19912:93903_1:N:0:ATCACG PGA_scaffold14069__1_contigs__length_1731 1632 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:10045:94746_1:N:0:ATCACG PGA_scaffold3992__1_contigs__length_4243 4146 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8315:95341_1:N:0:ATCACG PGA_scaffold49882__1_contigs__length_1026 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15583:95741_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798939 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:15754:96295_1:N:0:ATCACG PGA_scaffold3302__1_contigs__length_1089 994 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:2151:96846_1:N:0:ATCACG PGA_scaffold44297__1_contigs__length_8044 7945 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:5215:96874_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:1828:97656_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:8655:98540_1:N:0:ATCACG PGA_scaffold53886__1_contigs__length_1734 1637 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2304:9368:99394_1:N:0:ATCACG PGA_scaffold69502__1_contigs__length_1900 1806 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:8067:2505_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:11615:2843_1:N:0:ATCACG PGA_scaffold69629__1_contigs__length_4117 4028 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12359:7001_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9783:7289_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17443:7986_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:19947:8931_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:20229:10178_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1087 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:1834:10768_1:N:0:ATCACG PGA_scaffold58103__1_contigs__length_5536 5435 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:5839:11188_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:5861:11347_1:N:0:ATCACG PGA_scaffold21253__1_contigs__length_1081 983 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16334:13051_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:15833:13974_1:N:0:ATCACG PGA_scaffold312267__1_contigs__length_6211 6123 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12852:16739_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7893:18201_1:N:0:ATCACG PGA_scaffold9703__1_contigs__length_4238 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3113:19774_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:18294:20398_1:N:0:ATCACG PGA_scaffold63257__1_contigs__length_1801 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7519:21858_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12617:22414_1:N:0:ATCACG PGA_scaffold994__1_contigs__length_1026 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:10367:23498_1:N:0:ATCACG PGA_scaffold65226__1_contigs__length_2438 2339 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13246:24784_1:N:0:ATCACG PGA_scaffold48498__1_contigs__length_32874 32782 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7361:25103_1:N:0:ATCACG PGA_scaffold63040__1_contigs__length_10823 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12437:25294_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:19229:28321_1:N:0:ATCACG PGA_scaffold63603__1_contigs__length_6671 6573 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:8326:29245_1:N:0:ATGACG PGA_scaffold47219__1_contigs__length_2018 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:4462:29297_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2916:31521_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2664:32133_1:N:0:ATCACG PGA_scaffold56269__1_contigs__length_1703 1609 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:10646:32775_1:N:0:ATCACG PGA_scaffold31977__1_contigs__length_4172 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2303:35370_1:N:0:ATCACG PGA_scaffold68466__1_contigs__length_1698 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9444:36270_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:14697:36994_1:N:0:ATCACG PGA_scaffold22663__1_contigs__length_3248 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12285:37392_1:N:0:ATCACG PGA_scaffold35705__1_contigs__length_2009 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2734:39446_1:N:0:ATCACG PGA_scaffold40087__1_contigs__length_4774 4686 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12952:39630_1:N:0:ATCACG PGA_scaffold51538__1_contigs__length_9641 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3951:40830_1:N:0:ATCACG PGA_scaffold64580__1_contigs__length_18668 18570 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3229:41244_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12574:43994_1:N:0:ATCACG PGA_scaffold35705__1_contigs__length_2009 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:19636:43873_1:N:0:ATCACG PGA_scaffold65565__1_contigs__length_2786 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:4728:45016_1:N:0:ATCACG PGA_scaffold50621__1_contigs__length_3932 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13946:45024_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:11985:46099_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7748:46272_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1086 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16689:46529_1:N:0:ATCACG PGA_scaffold34833__1_contigs__length_1462 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:5436:47654_1:N:0:ATCACG PGA_scaffold20675__1_contigs__length_5265 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3440:48478_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:1671:48748_1:N:0:ATCACG PGA_scaffold66377__1_contigs__length_3789 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:15795:50462_1:N:0:ATCACG PGA_scaffold6828__1_contigs__length_3149 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13538:50532_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1091 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:15978:50669_1:N:0:ATCACG PGA_scaffold68466__1_contigs__length_1698 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3201:51163_1:N:0:ATCACG PGA_scaffold32809__1_contigs__length_1637 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:10657:51189_1:N:0:ATCACG PGA_scaffold235655__1_contigs__length_1843 1746 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:10990:51695_1:N:0:ATCACG PGA_scaffold70361__1_contigs__length_5766 5672 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16834:51504_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:11045:54593_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:6240:54820_1:N:0:ATCACG PGA_scaffold55744__1_contigs__length_2331 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17166:57868_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:20053:58954_1:N:0:ATCACG PGA_scaffold47606__1_contigs__length_1009 916 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7491:59531_1:N:0:ATCACG PGA_scaffold66377__1_contigs__length_3789 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:14381:59911_1:N:0:ATCACG PGA_scaffold822__1_contigs__length_46947 46860 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:6351:61939_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17245:61893_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:20610:62204_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9279:62641_1:N:0:ATCACG PGA_scaffold69769__1_contigs__length_67326 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3328:63773_1:N:0:ATCACG PGA_scaffold70577__1_contigs__length_11527 11431 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17186:64442_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9152:64891_1:N:0:ATCACG PGA_scaffold6229__1_contigs__length_10514 10425 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17248:64905_1:N:0:ATCACG PGA_scaffold1284__1_contigs__length_1147 1060 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9235:65736_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16561:66372_1:N:0:ATCACG PGA_scaffold49984__1_contigs__length_2730 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17224:67314_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17730:68192_1:N:0:ATCACG PGA_scaffold1256__1_contigs__length_1131 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3288:68439_1:N:0:ATCACG PGA_scaffold58188__1_contigs__length_4340 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2506:69469_1:N:0:ATCACG PGA_scaffold25280__1_contigs__length_1883 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:4505:69439_1:N:0:ATCACG PGA_scaffold17314__1_contigs__length_1656 1594 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13892:69336_1:N:0:ATCACG PGA_scaffold53656__1_contigs__length_14654 14563 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9297:69635_1:N:0:ATCACG PGA_scaffold67950__1_contigs__length_1486 1400 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13659:69871_1:N:0:ATCACG PGA_scaffold67308__1_contigs__length_1536 1444 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:18400:69916_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:18966:70008_1:N:0:ATCACG PGA_scaffold137756__1_contigs__length_2355 2302 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16142:71670_1:N:0:ATCACG PGA_scaffold21421__1_contigs__length_3674 3583 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3921:71992_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9832:71811_1:N:0:ATCACG PGA_scaffold47074__1_contigs__length_2625 2528 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:14159:72534_1:N:0:ATCACG PGA_scaffold4952__1_contigs__length_1476 1381 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:21069:73503_1:N:0:ATCACG PGA_scaffold69886__1_contigs__length_1221 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3939:74818_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9820:76656_1:N:0:ATCACG PGA_scaffold18435__1_contigs__length_6655 6568 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:1709:77701_1:N:0:ATCACG PGA_scaffold70909__1_contigs__length_2936 2848 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:4531:77909_1:N:0:ATCACA PGA_scaffold1461__1_contigs__length_1124 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3601:78298_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:11500:78929_1:N:0:ATCACG PGA_scaffold34015__1_contigs__length_5030 4932 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13384:80133_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:12786:80485_1:N:0:ATCACG PGA_scaffold51392__1_contigs__length_1221 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:16608:80435_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:8870:81815_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:6645:82649_1:N:0:ATCACG PGA_scaffold41574__1_contigs__length_2764 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9962:82825_1:N:0:ATCACG PGA_scaffold44472__1_contigs__length_3116 3015 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3154:84512_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:21239:85806_1:N:0:ATCACG PGA_scaffold34601__1_contigs__length_1043 1005 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3373:86048_1:N:0:ATCACG PGA_scaffold58249__1_contigs__length_1718 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:4143:86901_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:20431:86948_1:N:0:ATCACG PGA_scaffold69291__1_contigs__length_2639 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:7689:87217_1:N:0:ATCACG PGA_scaffold59532__1_contigs__length_5732 5642 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:10567:87716_1:N:0:ATCACG PGA_scaffold67569__1_contigs__length_1923 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:11750:87797_1:N:0:ATCACG PGA_scaffold31609__1_contigs__length_7223 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2040:88684_1:N:0:ATCACG PGA_scaffold34601__1_contigs__length_1043 944 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13262:90320_1:N:0:ATCACG PGA_scaffold41315__1_contigs__length_1596 1499 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:1318:90783_1:N:0:ATCACG PGA_scaffold70283__1_contigs__length_28907 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:17289:91304_1:N:0:ATCACG PGA_scaffold25592__1_contigs__length_1155 1057 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:15382:91894_1:N:0:ATCACG PGA_scaffold239408__1_contigs__length_1160 1058 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:8121:92672_1:N:0:ATCACG PGA_scaffold2085__1_contigs__length_1697 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:3339:92872_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:9551:94785_1:N:0:ATCACG PGA_scaffold19498__1_contigs__length_3093 2995 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:13262:94886_1:N:0:ATCACG PGA_scaffold13090__1_contigs__length_2163 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:8882:96104_1:N:0:ATCACG PGA_scaffold4377__1_contigs__length_1131 1034 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:19230:97980_1:N:0:ATCACG PGA_scaffold47588__1_contigs__length_2038 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:6399:98278_1:N:0:ATCACG PGA_scaffold46962__1_contigs__length_1301 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2181:99576_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798932 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:2552:99500_1:N:0:ATCACG PGA_scaffold69160__1_contigs__length_6024 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:5126:99822_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2306:14779:100598_1:N:0:ATCACG PGA_scaffold287__1_contigs__length_11613 11515 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13671:3042_1:N:0:ATCACG PGA_scaffold69356__1_contigs__length_8325 8283 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3710:3554_1:N:0:ATCACG PGA_scaffold33478__1_contigs__length_1168 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19140:3619_1:N:0:ATCACG PGA_scaffold50742__1_contigs__length_1909 1823 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1662:4457_1:N:0:ATCACG PGA_scaffold41902__1_contigs__length_7291 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:8773:5119_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17728:5471_1:N:0:ATCACG PGA_scaffold65289__1_contigs__length_5725 5629 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4690:6069_1:N:0:ATCACG PGA_scaffold13365__1_contigs__length_1608 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5262:6194_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1085 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:2815:7441_1:N:0:ATCACG PGA_scaffold50040__1_contigs__length_8857 8765 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19728:7299_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1086 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20553:7641_1:N:0:ATCACG PGA_scaffold72604__1_contigs__length_5009 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1298:7780_1:N:0:ATCACG PGA_scaffold49143__1_contigs__length_1078 988 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15301:8378_1:N:0:ATCACG PGA_scaffold15704__1_contigs__length_1103 1006 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9937:8839_1:N:0:ATCACG PGA_scaffold56144__1_contigs__length_3020 2922 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7694:9636_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16632:9550_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17124:10419_1:N:0:ATCACG PGA_scaffold46844__1_contigs__length_1748 1657 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11462:10951_1:N:0:ATCACG PGA_scaffold58968__1_contigs__length_7040 6942 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10361:11023_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20037:11195_1:N:0:ATCACC PGA_scaffold308724__1_contigs__length_2352 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1206:11269_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19083:11986_1:N:0:ATCACG PGA_scaffold4212__1_contigs__length_1798 1701 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13327:13439_1:N:0:ATCACG PGA_scaffold33341__1_contigs__length_1731 1669 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:18706:13783_1:N:0:ATCACG PGA_scaffold140974__1_contigs__length_1536 1435 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10657:14512_1:N:0:ATCACG PGA_scaffold3021__1_contigs__length_1474 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9325:15328_1:N:0:ATCACG PGA_scaffold17310__1_contigs__length_1179 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13064:15430_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798945 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14835:15774_1:N:0:ATCACG PGA_scaffold54747__1_contigs__length_6212 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15121:16320_1:N:0:ATCACG PGA_scaffold62128__1_contigs__length_7925 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5264:18247_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17210:18890_1:N:0:ATCACG PGA_scaffold25359__1_contigs__length_1372 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9243:20074_1:N:0:ATCACG PGA_scaffold22230__1_contigs__length_1286 1222 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9416:20135_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1086 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17024:20046_1:N:0:ATCACG PGA_scaffold25592__1_contigs__length_1155 1073 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14418:20386_1:N:0:ATCACG PGA_scaffold16588__1_contigs__length_3210 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6353:21086_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9035:21111_1:N:0:ATCACG PGA_scaffold1899__1_contigs__length_1543 1450 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11696:21679_1:N:0:ATCACG PGA_scaffold71472__1_contigs__length_4043 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13132:21714_1:N:0:ATCACG PGA_scaffold60123__1_contigs__length_2045 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1941:22186_1:N:0:ATCACG PGA_scaffold45097__1_contigs__length_2333 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15379:22126_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1943:24271_1:N:0:ATCACG PGA_scaffold40535__1_contigs__length_2660 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10399:24310_1:N:0:ATCACG PGA_scaffold48386__1_contigs__length_1555 1469 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17101:26353_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1085 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14599:26600_1:N:0:ATCACG PGA_scaffold51330__1_contigs__length_11389 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11859:30780_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5039:31045_1:N:0:ATCACG PGA_scaffold15609__1_contigs__length_3808 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3181:32414_1:N:0:ATCACG PGA_scaffold68961__1_contigs__length_6902 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:12404:32788_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6021:33552_1:N:0:ATCACG PGA_scaffold45539__1_contigs__length_2388 2299 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:2319:33801_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14588:34222_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19123:34432_1:N:0:ATCACG PGA_scaffold70442__1_contigs__length_1392 1294 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3311:35016_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10864:35465_1:N:0:ATCACG PGA_scaffold57578__1_contigs__length_7791 7701 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4154:35912_1:N:0:ATCACG PGA_scaffold34601__1_contigs__length_1043 949 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14261:35767_1:N:0:ATCACG PGA_scaffold718__1_contigs__length_989392 989295 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:2142:36781_1:N:0:ATCACG PGA_scaffold64457__1_contigs__length_13537 13439 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13340:36816_1:N:0:ATCACG PGA_scaffold121560__1_contigs__length_2923 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:12679:37482_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3892:39015_1:N:0:ATCACG PGA_scaffold64568__1_contigs__length_3098 3012 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17374:39075_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:8504:40654_1:N:0:ATCACG PGA_scaffold30786__1_contigs__length_1135 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16770:41533_1:N:0:ATCACG PGA_scaffold31496__1_contigs__length_1474 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:8592:41878_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7423:42372_1:N:0:ATCACG PGA_scaffold30548__1_contigs__length_3292 3197 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20456:42889_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9440:43259_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10765:45549_1:N:0:ATCACG PGA_scaffold57051__1_contigs__length_5383 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1858:47501_1:N:0:ATCACG PGA_scaffold19253__1_contigs__length_4396 4295 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5122:48405_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:18315:48621_1:N:0:ATCACG PGA_scaffold17225__1_contigs__length_1255 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17818:50286_1:N:0:ATCACG PGA_scaffold35074__1_contigs__length_1167 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10405:51003_1:N:0:ATCACG PGA_scaffold1197__1_contigs__length_1399 1311 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5474:55260_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1094 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15690:55684_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11518:56340_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3286:57004_1:N:0:ATCACG PGA_scaffold70011__1_contigs__length_3398 3314 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15223:57200_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:18396:57714_1:N:0:ATCACG PGA_scaffold71472__1_contigs__length_4043 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15107:57844_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14900:59289_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16606:59304_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16265:59578_1:N:0:ATCACG PGA_scaffold35386__1_contigs__length_1037 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:18577:59631_1:N:0:ATCACG PGA_scaffold70308__1_contigs__length_4774 4684 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:8606:60919_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4315:61061_1:N:0:ATAACG PGA_scaffold25573__1_contigs__length_1039 947 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20043:61450_1:N:0:ATCACG PGA_scaffold70563__1_contigs__length_3878 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17683:61853_1:N:0:ATCACG PGA_scaffold72512__1_contigs__length_2796 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5009:62318_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1085 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19408:62365_1:N:0:ATCACG PGA_scaffold62949__1_contigs__length_6761 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:8190:63330_1:N:0:ATCACG PGA_scaffold33565__1_contigs__length_1351 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11510:63488_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19700:63309_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7516:63688_1:N:0:ATCACG PGA_scaffold73092__1_contigs__length_8564 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9285:64457_1:N:0:ATCACG PGA_scaffold42218__1_contigs__length_1114 1018 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16705:64990_1:N:0:ATCACG PGA_scaffold63111__1_contigs__length_4081 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6058:66746_1:N:0:ATCACG PGA_scaffold718__1_contigs__length_989392 989293 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:12732:66924_1:N:0:ATCACG PGA_scaffold5226__1_contigs__length_1012 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14099:67124_1:N:0:ATCACG PGA_scaffold14307__1_contigs__length_1622 1528 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6058:67654_1:N:0:ATCACG PGA_scaffold25003__1_contigs__length_2004 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3268:67777_1:N:0:ATCACG PGA_scaffold48367__1_contigs__length_1307 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4490:67766_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5222:69401_1:N:0:ATCACG PGA_scaffold58308__1_contigs__length_1641 1557 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:2301:69609_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:12847:71119_1:N:0:ATCACG PGA_scaffold52077__1_contigs__length_1123 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5943:71739_1:N:0:ATCACG PGA_scaffold9245__1_contigs__length_1388 1287 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:14504:71824_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20952:72238_1:N:0:ATCACG PGA_scaffold214425__1_contigs__length_1025 923 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4714:72344_1:N:0:ATCACG PGA_scaffold46614__1_contigs__length_7641 7545 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:5296:74110_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9952:74158_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4127:74979_1:N:0:ATCACG PGA_scaffold48372__1_contigs__length_1581 1486 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10101:76735_1:N:0:ATCACG PGA_scaffold62396__1_contigs__length_7116 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19064:76749_1:N:0:ATCACG PGA_scaffold31100__1_contigs__length_1573 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:2638:77340_1:N:0:ATCACG PGA_scaffold7830__1_contigs__length_3482 3382 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4781:77460_1:N:0:ATCACG PGA_scaffold15983__1_contigs__length_2679 2583 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20725:78060_1:N:0:ATCACG PGA_scaffold34477__1_contigs__length_6039 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19698:78776_1:N:0:ATCACG PGA_scaffold71472__1_contigs__length_4043 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19800:78958_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6278:80118_1:N:0:ATCACG PGA_scaffold70515__1_contigs__length_2837 2753 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19178:80299_1:N:0:ATCACG PGA_scaffold52757__1_contigs__length_2685 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4332:80714_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:1875:81111_1:N:0:ATCACG PGA_scaffold69518__1_contigs__length_13032 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7031:81761_1:N:0:ATCACG PGA_scaffold62850__1_contigs__length_1729 1631 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13442:82830_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:4130:83466_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13200:83865_1:N:0:ATCACG PGA_scaffold34601__1_contigs__length_1043 949 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:3895:84680_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7463:84961_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17804:84786_1:N:0:ATCACG PGA_scaffold46531__1_contigs__length_2512 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:7636:88061_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:10887:89458_1:N:0:ATCACG PGA_scaffold53497__1_contigs__length_1145 1063 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:15041:89759_1:N:0:ATAACG PGA_scaffold71174__1_contigs__length_2965 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9219:91372_1:N:0:ATCACG PGA_scaffold25592__1_contigs__length_1155 1082 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:9067:94495_1:N:0:ATCACG PGA_scaffold14495__1_contigs__length_1124 1025 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:16526:94753_1:N:0:ATCACG PGA_scaffold60123__1_contigs__length_2045 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20464:94879_1:N:0:ATCACG PGA_scaffold58249__1_contigs__length_1718 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:19741:95282_1:N:0:ATCACG PGA_scaffold65226__1_contigs__length_2438 2339 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:6953:96860_1:N:0:ATCACG PGA_scaffold1712__1_contigs__length_2769 2671 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:11498:98935_1:N:0:ATCACG PGA_scaffold42717__1_contigs__length_6239 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:17480:99429_1:N:0:ATCACG PGA_scaffold68029__1_contigs__length_1409 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:20265:100138_1:N:0:ATCACG PGA_scaffold51538__1_contigs__length_9641 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:13757:100419_1:N:0:ATCACG PGA_scaffold66410__1_contigs__length_2265 2173 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2307:12775:100628_1:N:0:ATCACG PGA_scaffold70484__1_contigs__length_1579 1488 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20717:2266_1:N:0:ATCACG PGA_scaffold60892__1_contigs__length_1429 1333 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15119:3890_1:N:0:ATCACG PGA_scaffold41869__1_contigs__length_1386 1291 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20594:5729_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1087 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:8988:6010_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:17893:8748_1:N:0:ATCACG PGA_scaffold26918__1_contigs__length_2211 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15815:8816_1:N:0:ATCACG PGA_scaffold48962__1_contigs__length_1318 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:10617:9254_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14281:10681_1:N:0:ATCACG PGA_scaffold26268__1_contigs__length_2565 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:10296:11439_1:N:0:ATCACG PGA_scaffold54899__1_contigs__length_1781 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9162:11649_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14387:11918_1:N:0:ATCACG PGA_scaffold4952__1_contigs__length_1476 1401 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14748:13374_1:N:0:ATCACG PGA_scaffold46992__1_contigs__length_1886 1791 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15458:13682_1:N:0:ATCACG PGA_scaffold66423__1_contigs__length_8655 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:11125:14843_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16398:15251_1:N:0:ATCACG PGA_scaffold39271__1_contigs__length_2207 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14997:15627_1:N:0:ATCACG PGA_scaffold70909__1_contigs__length_2936 2843 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:11627:16049_1:N:0:ATCACG PGA_scaffold61567__1_contigs__length_4159 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14796:16430_1:N:0:ATCACG PGA_scaffold1571__1_contigs__length_1083 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:13453:17145_1:N:0:ATCACG PGA_scaffold41049__1_contigs__length_3786 3694 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:12661:17690_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16852:18833_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16485:21704_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:19461:21958_1:N:0:ATCACG PGA_scaffold1287__1_contigs__length_1075 981 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15333:22032_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6200:22831_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:3147:23554_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4199:23811_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16837:24003_1:N:0:ATCACG PGA_scaffold52893__1_contigs__length_36559 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14438:24281_1:N:0:ATCACG PGA_scaffold33088__1_contigs__length_1302 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6692:24840_1:N:0:ATCACG PGA_scaffold66528__1_contigs__length_7805 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16968:24825_1:N:0:ATCACG PGA_scaffold70909__1_contigs__length_2936 2844 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:5423:25074_1:N:0:ATCACG PGA_scaffold25592__1_contigs__length_1155 1058 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:5954:26448_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16672:27349_1:N:0:ATCACG PGA_scaffold9__45_contigs__length_38581958 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9991:27629_1:N:0:ATCACG PGA_scaffold26918__1_contigs__length_2211 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7119:29856_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15733:30018_1:N:0:ATCACG PGA_scaffold718__1_contigs__length_989392 989307 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:19083:30427_1:N:0:ATCACG PGA_scaffold26648__1_contigs__length_3121 3024 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:11109:31786_1:N:0:ATCACG PGA_scaffold44714__1_contigs__length_3047 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4998:32347_1:N:0:ATCACG PGA_scaffold69291__1_contigs__length_2639 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:13761:32887_1:N:0:ATCACG PGA_scaffold46567__1_contigs__length_6777 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6504:33443_1:N:0:ATCACG PGA_scaffold24819__1_contigs__length_1471 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6510:33802_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4256:34277_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14595:34748_1:N:0:ATCACG PGA_scaffold48367__1_contigs__length_1307 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4834:34951_1:N:0:ATCACG PGA_scaffold25576__1_contigs__length_1741 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:2268:35092_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9416:35087_1:N:0:ATCACG PGA_scaffold52144__1_contigs__length_5624 5534 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7964:35954_1:N:0:ATCACG PGA_scaffold48299__1_contigs__length_3860 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:17808:36207_1:N:0:ATCACG PGA_scaffold151442__1_contigs__length_2069 1971 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14520:36683_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6253:36879_1:N:0:ATCACG PGA_scaffold70957__1_contigs__length_4779 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:3579:37470_1:N:0:ATCACG PGA_scaffold58927__1_contigs__length_2323 2229 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:21093:37426_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15711:39561_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7521:39900_1:N:0:ATCACG PGA_scaffold68163__1_contigs__length_1447 1350 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20564:39833_1:N:0:ATCACG PGA_scaffold68340__1_contigs__length_8504 8417 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7085:40094_1:N:0:ATCACG PGA_scaffold44682__1_contigs__length_2101 2005 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6257:41258_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:18446:42272_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:5004:42721_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4768:42993_1:N:0:ATCACG PGA_scaffold35386__1_contigs__length_1037 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:8023:43300_1:N:0:ATCACG PGA_scaffold14069__1_contigs__length_1731 1639 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9166:44536_1:N:0:ATCACG PGA_scaffold60821__1_contigs__length_6365 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16624:45086_1:N:0:TTCACG PGA_scaffold62938__1_contigs__length_6419 6360 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15671:45614_1:N:0:ATCACG PGA_scaffold67852__1_contigs__length_9268 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20475:45725_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1087 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20615:45807_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798926 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:3042:47271_1:N:0:ATCACG PGA_scaffold55991__1_contigs__length_1093 997 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:11634:47637_1:N:0:ATCACG PGA_scaffold50588__1_contigs__length_1030 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:3143:47768_1:N:0:ATCACG PGA_scaffold7311__1_contigs__length_2380 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:10340:48076_1:N:0:ATCACG PGA_scaffold3274__1_contigs__length_2812 2718 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14617:48744_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1095 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16407:49436_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798926 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:18559:49344_1:N:0:ATCACG PGA_scaffold56285__1_contigs__length_1071 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:4754:50201_1:N:0:ATCACG PGA_scaffold39942__1_contigs__length_3968 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7844:50935_1:N:0:ATCACG PGA_scaffold70484__1_contigs__length_1579 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:17569:50836_1:N:0:ATCACG PGA_scaffold35086__1_contigs__length_2932 2852 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7160:52162_1:N:0:ATCACG PGA_scaffold31023__1_contigs__length_1252 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15711:52278_1:N:0:ATCACG PGA_scaffold20616__1_contigs__length_1183 1088 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:5031:52904_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6884:53690_1:N:0:ATCACG PGA_scaffold20096__1_contigs__length_4081 3983 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:13682:53624_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:12708:54517_1:N:0:ATCACG PGA_scaffold60123__1_contigs__length_2045 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:17920:55787_1:N:0:ATCACG PGA_scaffold24819__1_contigs__length_1471 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:1597:56202_1:N:0:ATCACG PGA_scaffold1903__1_contigs__length_2128 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:2433:58274_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20791:59199_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9965:59516_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:19528:60997_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7697:61376_1:N:0:ATCACG PGA_scaffold56994__1_contigs__length_2838 2745 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:20202:61480_1:N:0:ATCACG PGA_scaffold2268__1_contigs__length_1115 2 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:7897:61997_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798978 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:6328:62102_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:8873:63917_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798929 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:10651:63819_1:N:0:ATCACG PGA_scaffold192667__1_contigs__length_1805 1709 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:15447:63848_1:N:0:ATCACG PGA_scaffold19780__1_contigs__length_1020 930 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:18910:63827_1:N:0:ATCACG PGA_scaffold72531__1_contigs__length_13247 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:14563:67049_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798928 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:11688:68577_1:N:0:ATCACG PGA_scaffold48421__1_contigs__length_2033 1941 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:16633:69891_1:N:0:ATCACG PGA_scaffold65517__1_contigs__length_15888 1 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:9144:71507_1:N:0:ATCACG PGA_scaffold3624__1_contigs__length_2909 2815 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:12958:73615_1:N:0:ATCACG PGA_scaffold53047__1_contigs__length_6631 3 Chromosomal sequence could not be extracted for SL-HBW:624:CAAWVANXX:5:2303:3783:73985_1:N:0:ATCACG PGA_scaffold323__1_contigs__length_1799026 1798927 1000000 reads; of these: 1000000 (100.00%) were paired; of these: 473210 (47.32%) aligned concordantly 0 times 198222 (19.82%) aligned concordantly exactly 1 time 328568 (32.86%) aligned concordantly >1 times 52.68% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were paired; of these: 469222 (46.92%) aligned concordantly 0 times 200155 (20.02%) aligned concordantly exactly 1 time 330623 (33.06%) aligned concordantly >1 times 53.08% overall alignment rate Processed 1000000 sequence pairs so far Processed 1000000 sequences in total Successfully deleted the temporary files pgen_bsseq_all_R1.fastq.gz_C_to_T.fastq and pgen_bsseq_all_R2.fastq.gz_G_to_A.fastq Final Alignment report ====================== Sequence pairs analysed in total: 1000000 Final Cytosine Methylation Report ================================= Total number of C's analysed: 17976868 Total methylated C's in CpG context: 550216 Total methylated C's in CHG context: 78782 Total methylated C's in CHH context: 141704 Total methylated C's in Unknown context: 2523 Total unmethylated C's in CpG context: 2073151 Total unmethylated C's in CHG context: 3760624 Total unmethylated C's in CHH context: 11372391 Total unmethylated C's in Unknown context: 34338 C methylated in CpG context: 21.0% C methylated in CHG context: 2.1% C methylated in CHH context: 1.2% C methylated in unknown context (CN or CHN): 6.8% Bismark completed in 0d 0h 13m 52s ==================== Bismark run complete ====================