/gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/P_generosa/BSeq/rrbs/pgen_bsseq_all_R2.fastq.gz
Data processed at 19:05 on 2019-02-23
Alignment
Sequence pairs analysed in total
1000000
Paired-end alignments with a unique best hit
555406
Pairs without alignments under any condition
277284
Pairs that did not map uniquely
167310
Genomic sequence context not extractable (edges of chromosomes)
654
Cytosine Methylation
Total C's analysed
17976868
Methylated C's in CpG context
550216
Methylated C's in CHG context
78782
Methylated C's in CHH context
141704
Methylated C's in Unknown context
2523
Unmethylated C's in CpG context
2073151
Unmethylated C's in CHG context
3760624
Unmethylated C's in CHH context
11372391
Unmethylated C's in Unknown context
34338
Percentage methylation (CpG context)
21.0%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
276549
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
278203
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions