cvir_bsseq_all_R1_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 909494 lines in total Total number of methylation call strings processed: 909494 Final Cytosine Methylation Report ================================= Total number of C's analysed: 13496392 Total methylated C's in CpG context: 1360954 Total methylated C's in CHG context: 94075 Total methylated C's in CHH context: 737951 Total C to T conversions in CpG context: 527776 Total C to T conversions in CHG context: 2752388 Total C to T conversions in CHH context: 8023248 C methylated in CpG context: 72.1% C methylated in CHG context: 3.3% C methylated in CHH context: 8.4%