cvir_bsseq_all_R1_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 18458 lines in total Total number of methylation call strings processed: 18458 Final Cytosine Methylation Report ================================= Total number of C's analysed: 278472 Total methylated C's in CpG context: 29289 Total methylated C's in CHG context: 2395 Total methylated C's in CHH context: 18136 Total C to T conversions in CpG context: 9412 Total C to T conversions in CHG context: 55424 Total C to T conversions in CHH context: 163816 C methylated in CpG context: 75.7% C methylated in CHG context: 4.1% C methylated in CHH context: 10.0%