Total number of alignments analysed in cvir_bsseq_all_pe_R1_bismark_bt2_pe.bam:	1164998
Total number duplicated alignments removed:	22732 (1.95%)
Duplicated alignments were found at:	19433 different position(s)

Total count of deduplicated leftover sequences: 1142266 (98.05% of total)