/gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 18:02 on 2019-02-23
Alignment
Sequence pairs analysed in total
5000000
Paired-end alignments with a unique best hit
582499
Pairs without alignments under any condition
4206027
Pairs that did not map uniquely
211474
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
17059573
Methylated C's in CpG context
1699045
Methylated C's in CHG context
63756
Methylated C's in CHH context
399275
Methylated C's in Unknown context
5239
Unmethylated C's in CpG context
766793
Unmethylated C's in CHG context
3729731
Unmethylated C's in CHH context
10400973
Unmethylated C's in Unknown context
60296
Percentage methylation (CpG context)
68.9%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
3.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
290668
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
291831
original bottom strand
Deduplication
Alignments analysed
1164998
Unique alignments
1142266
Duplicates removed
22732
Duplicated alignments were found at 19433 different positions