/gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 17:33 on 2019-02-23
Alignment
Sequence pairs analysed in total
500000
Paired-end alignments with a unique best hit
67032
Pairs without alignments under any condition
409150
Pairs that did not map uniquely
23818
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
1981660
Methylated C's in CpG context
211845
Methylated C's in CHG context
8665
Methylated C's in CHH context
50921
Methylated C's in Unknown context
569
Unmethylated C's in CpG context
75912
Unmethylated C's in CHG context
429847
Unmethylated C's in CHH context
1204470
Unmethylated C's in Unknown context
6420
Percentage methylation (CpG context)
73.6%
Percentage methylation (CHG context)
2.0%
Percentage methylation (CHH context)
4.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
33494
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
33538
original bottom strand
Deduplication
Alignments analysed
134064
Unique alignments
133531
Duplicates removed
533
Duplicated alignments were found at 516 different positions