/gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 17:45 on 2019-02-23
Alignment
Sequence pairs analysed in total
2000000
Paired-end alignments with a unique best hit
213932
Pairs without alignments under any condition
1710348
Pairs that did not map uniquely
75720
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
6295839
Methylated C's in CpG context
651813
Methylated C's in CHG context
23800
Methylated C's in CHH context
142654
Methylated C's in Unknown context
1942
Unmethylated C's in CpG context
247284
Unmethylated C's in CHG context
1370882
Unmethylated C's in CHH context
3859406
Unmethylated C's in Unknown context
25256
Percentage methylation (CpG context)
72.5%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
3.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
107132
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
106800
original bottom strand
Deduplication
Alignments analysed
427864
Unique alignments
424061
Duplicates removed
3803
Duplicated alignments were found at 3462 different positions