/gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_virginica/BSseq/cvir_bsseq_all_pe_R2.fastq.gz
Data processed at 17:31 on 2019-02-23
Alignment
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
13376
Pairs without alignments under any condition
81962
Pairs that did not map uniquely
4662
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
395848
Methylated C's in CpG context
42320
Methylated C's in CHG context
1658
Methylated C's in CHH context
10089
Methylated C's in Unknown context
99
Unmethylated C's in CpG context
15412
Unmethylated C's in CHG context
85481
Unmethylated C's in CHH context
240888
Unmethylated C's in Unknown context
1270
Percentage methylation (CpG context)
73.3%
Percentage methylation (CHG context)
1.9%
Percentage methylation (CHH context)
4.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6641
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6735
original bottom strand
Deduplication
Alignments analysed
26752
Unique alignments
26724
Duplicates removed
28
Duplicated alignments were found at 28 different positions