cgig_bsseq_all_R1_bismark_bt2.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.19.0
Bismark result file: single-end (SAM format)
Output specified: strand-specific (default)


Processed 2557153 lines in total
Total number of methylation call strings processed: 2557153

Final Cytosine Methylation Report
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Total number of C's analysed:	21652499

Total methylated C's in CpG context:	838798
Total methylated C's in CHG context:	135877
Total methylated C's in CHH context:	261128

Total C to T conversions in CpG context:	2446917
Total C to T conversions in CHG context:	4440326
Total C to T conversions in CHH context:	13529453

C methylated in CpG context:	25.5%
C methylated in CHG context:	3.0%
C methylated in CHH context:	1.9%