File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs cgig_bsseq_pe_all_R1_bismark_bt2_pe.bam 5000000 4346662 2418753 407733 183 143478 4203184 42833940 760506 4201008 20354 6972501 72398 30807173