/gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R1.fastq.gz and /gscratch/scrubbed/samwhite/data/C_gigas/BSseq/cgig_bsseq_pe_all_R2.fastq.gz
Data processed at 16:00 on 2019-02-23
Alignment
Sequence pairs analysed in total
500000
Paired-end alignments with a unique best hit
102903
Pairs without alignments under any condition
361085
Pairs that did not map uniquely
36012
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
1088051
Methylated C's in CpG context
15584
Methylated C's in CHG context
254
Methylated C's in CHH context
920
Methylated C's in Unknown context
11
Unmethylated C's in CpG context
115727
Unmethylated C's in CHG context
179713
Unmethylated C's in CHH context
775853
Unmethylated C's in Unknown context
1157
Percentage methylation (CpG context)
11.9%
Percentage methylation (CHG context)
0.1%
Percentage methylation (CHH context)
0.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
52197
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
50700
original bottom strand
Deduplication
Alignments analysed
205794
Unique alignments
200508
Duplicates removed
5286
Duplicated alignments were found at 3770 different positions