File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs cgig_bsseq_pe_all_R1_bismark_bt2_pe.bam 500000 205794 361085 36012 6 5286 200508 1088051 15584 115727 254 179713 920 775853