/gannet/Atumefaciens/20190221_pgenerosa_genome_prep_bismark Create P.generosa bisulfite-converted genomes for use with Bismark analysis. Used Bowtie2 on Mox. Input genomes: - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v070.fa - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v071.fasta (scaffolds >10kbp) - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v073.fasta (scaffolds >30kbp) Converted genomes were tarred/gzipped and moved here: - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v070_bisulfite.tar.gz - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v071_bisulfite.tar.gz - http://owl.fish.washington.edu/halfshell/genomic-databank/Pgenerosa_v073_bisulfite.tar.gz --- FILES - 20190312_cvir_genome_prep_bismark.sh: SBATCH script for job submission on Mox. - slurm-683353.out: SLURM output file (i.e. stderr/stdout). - system_path.log: Contents of Sam's Mox system $PATH. --- Notebook: https://robertslab.github.io/sams-notebook/2019/02/21/Data-Management-Create-Geoduck-Bisulfite-Genomes-with-Bismark-on-Mox.html