/gannet/Atumefaciens/20190221_cgigas_genome_prep_bismark

Create C.gigas bisulfite-converted genome for use with Bismark analysis.

Used Bowtie2 on Mox.

Input genome:

- http://owl.fish.washington.edu/halfshell/genomic-databank/Crassostrea_gigas.oyster_v9.dna_sm.toplevel.fa

Converted genomes were tarred/gzipped and moved here:

- http://owl.fish.washington.edu/halfshell/genomic-databank/Crassostrea_gigas.oyster_v9.dna_sm.toplevel_bisulfite.tar.gz

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FILES

- 20190312_cvir_genome_prep_bismark.sh:  SBATCH script for job submission on Mox.

- slurm-683353.out: SLURM output file (i.e. stderr/stdout).

- system_path.log: Contents of Sam's Mox system $PATH.

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Notebook:

https://robertslab.github.io/sams-notebook/2019/02/21/Data-Management-Create-C.gigas-Bisulfite-Genome-with-Bismark-on-Mox.html