SHARED_ID	3f604840c7ddb2e0d3f70c99154ed92c	
CTL_OPTIONS	maker_gff	
CTL_OPTIONS	other_gff	
CTL_OPTIONS	est	/gscratch/srlab/sam/data/P_generosa/generosa_transcriptomes/20180827_trinity_geoduck.fasta
CTL_OPTIONS	est_reads	
CTL_OPTIONS	altest	
CTL_OPTIONS	est_gff	
CTL_OPTIONS	altest_gff	
CTL_OPTIONS	protein	combined_proteomes.fasta
CTL_OPTIONS	protein_gff	
CTL_OPTIONS	model_org	all
CTL_OPTIONS	repeat_protein	te_proteins.fasta
CTL_OPTIONS	rmlib	/gscratch/srlab/sam/data/P_generosa/generosa_repeats/Pgenerosa_v070-families.fa
CTL_OPTIONS	rm_gff	
CTL_OPTIONS	organism_type	eukaryotic
CTL_OPTIONS	predictor	est2genome,protein2genome
CTL_OPTIONS	est2genome	1
CTL_OPTIONS	altest2genome	0
CTL_OPTIONS	snaphmm	
CTL_OPTIONS	gmhmm	
CTL_OPTIONS	augustus_species	
CTL_OPTIONS	fgenesh_par_file	
CTL_OPTIONS	model_gff	
CTL_OPTIONS	pred_gff	
CTL_OPTIONS	max_dna_len	100000
CTL_OPTIONS	split_hit	10000
CTL_OPTIONS	pred_flank	200
CTL_OPTIONS	pred_stats	0
CTL_OPTIONS	min_protein	0
CTL_OPTIONS	AED_threshold	1
CTL_OPTIONS	single_exon	0
CTL_OPTIONS	single_length	250
CTL_OPTIONS	keep_preds	0
CTL_OPTIONS	map_forward	0
CTL_OPTIONS	est_forward	0
CTL_OPTIONS	correct_est_fusion	0
CTL_OPTIONS	alt_splice	0
CTL_OPTIONS	always_complete	0
CTL_OPTIONS	alt_peptide	C
CTL_OPTIONS	evaluate	0
CTL_OPTIONS	blast_type	ncbi+
CTL_OPTIONS	softmask	1
CTL_OPTIONS	pcov_blastn	0.8
CTL_OPTIONS	pid_blastn	0.85
CTL_OPTIONS	eval_blastn	1e-10
CTL_OPTIONS	bit_blastn	40
CTL_OPTIONS	depth_blastn	0
CTL_OPTIONS	pcov_rm_blastx	0.5
CTL_OPTIONS	pid_rm_blastx	0.4
CTL_OPTIONS	eval_rm_blastx	1e-06
CTL_OPTIONS	bit_rm_blastx	30
CTL_OPTIONS	pcov_blastx	0.5
CTL_OPTIONS	pid_blastx	0.4
CTL_OPTIONS	depth_blastx	0
CTL_OPTIONS	eval_blastx	1e-06
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CTL_OPTIONS	pcov_tblastx	0.8
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CTL_OPTIONS	eval_tblastx	1e-10
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CTL_OPTIONS	depth_tblastx	0
CTL_OPTIONS	ep_score_limit	20
CTL_OPTIONS	en_score_limit	20
CTL_OPTIONS	enable_fathom	0
CTL_OPTIONS	unmask	0
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CTL_OPTIONS	est_pass	0
CTL_OPTIONS	altest_pass	0
CTL_OPTIONS	protein_pass	0
CTL_OPTIONS	rm_pass	0
CTL_OPTIONS	other_pass	0
CTL_OPTIONS	pred_pass	0
CTL_OPTIONS	run	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
STARTED	Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/PGA_scaffold16611__1_contigs__length_16349.0.pred.raw.section	
FINISHED	Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/PGA_scaffold16611__1_contigs__length_16349.0.pred.raw.section	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
STARTED	Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/PGA_scaffold16611__1_contigs__length_16349.0.final.section	
FINISHED	Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/PGA_scaffold16611__1_contigs__length_16349.0.final.section	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190213_geoduck_maker_genome_annotation/Pgenerosa_v071.maker.output/Pgenerosa_v071_datastore/B7/C5/PGA_scaffold16611__1_contigs__length_16349//theVoid.PGA_scaffold16611__1_contigs__length_16349/run.log.child.0