Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. examining piece 1..6592 (6592 bp) Warning: Block unknown_C is not significant enough, removed from profile. viterbi algorithm progress: [%]: .Warning: Block unknown_A is not significant enough, removed from profile. examining piece 1..4334 (4334 bp) viterbi algorithm progress: [%]: ........Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. ....Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_Pexamining piece is not significant enough, removed from profile. 1..3222 (3222 bp) viterbi algorithm progress: [%]: .1010Warning: Block unknown_A is not significant enough, removed from profile. examining piece 1..7837 (7837 bp) .examining piece 1..5009 (5009 bp) .viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: examining piece 1..6718 (6718 bp) ......examining piece 1..2884 (2884 bp) .viterbi algorithm progress: [%]: ..examining piece 1..8967 (8967 bp) ..........viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: ...20..examining piece 1..7188 (7188 bp) ..Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. .10Warning: Block unknown_N is not significant enough, removed from profile. .Warning: Block unknown_P is not significant enough, removed from profile. ..20viterbi algorithm progress: [%]: ....examining piece 1..2045 (2045 bp) .viterbi algorithm progress: [%]: ...examining piece 1..3683 (3683 bp) ...viterbi algorithm progress: [%]: ....Warning: Block unknown_A is not significant enough, removed from profile. 10examining piece 1..8879 (8879 bp) ...examining piece 1..6637 (6637 bp) ...viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ........Warning: Block unknown_O is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. ...20...examining piece 1...2602 (2602 bp) ..viterbi algorithm progress: [%]: ......30.......................Warning: Block unknown_H is not significant enough, removed from profile. ..10.....examining piece 1..5126 (5126 bp) 10...viterbi algorithm progress: [%]: .Warning: Block unknown_Y is not significant enough, removed from profile. ..30.Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. .3020....Warning: Block unknown_B is not significant enough, removed from profile. ...10...10Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. ...Warning: Block unknown_H is not significant enough, removed from profile. ....Warning: Block unknown_L is not significant enough, removed from profile. .........Warning: Block unknown_G is not significant enough, removed from profile. ........Warning: Block unknown_Q is not significant enough, removed from profile. ..........Warning: Block unknown_C is not significant enough, removed from profile. .40..Warning: Block unknown_A is not significant enough, removed from profile. ...20.Warning: Block unknown_F is not significant enough, removed from profile. 40Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block .unknown_I is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. ....10...10.examining piece 1..9273 (9273 bp) ...............viterbi algorithm progress: [%]: ........20...examining piece 1..9389 (9389 bp) ..............Warning: Block unknown_D is not significant enough, removed from profile. ..examining piece 1..4157 (4157 bp) .......30viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ......3020.examining piece 1..3051 (3051 bp) 50..viterbi algorithm progress: [%]: ..20..4020...examining piece 1..4071 (4071 bp) .Warning: Block unknown_E is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. ....10...viterbi algorithm progress: [%]: ...Warning: Block unknown_O is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. ...examining piece .5580...examining piece 1..4612 (4612 bp) ...22910 (17331 bp) ....viterbi algorithm progress: [%]: .....examining piece 1819..7412 (5594 bp) ...examining piece 1..5090 (5090 bp) .viterbi algorithm progress: [%]: ..10.....viterbi algorithm progress: [%]: ......................30.....50...10Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: .......20...................Warning: Block unknown_K is not significant enough, removed from profile. ........30..............30.........50.....3020..Warning: Block unknown_I is not significant enough, removed from profile. ....Warning: Block unknown_L is not significant enough, removed from profile. .1010.examining piece 1..2161 (2161 bp) Warning: Block unknown_Q is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: ..40....examining piece 1..6586 (6586 bp) 20....Warning: Block unknown_M is not significant enough, removed from profile. ....Warning: Block .viterbi algorithm progress: [%]: .............Warning: Block unknown_I is not significant enough, removed from profile. .....Warning: Block unknown_O is not significant enough, removed from profile. .40Warning: Block unknown_Q is not significant enough, removed from profile. .Warning: Block unknown_R is not significant enough, removed from profile. .....10.Warning: Block unknown_AA is not significant enough, removed from profile. ...Warning: Block unknown_I is not significant enough, removed from profile. unknown_P is not significant enough, removed from profile. ..Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. ..40....30....Warning: Block unknown_U is not significant enough, removed from profile. ..examining piece 1..8644 (8644 bp) 20....................60...Warning: Block ..unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ..Warning: Block unknown_E is not significant enough, removed from profile. 40..Warning: Block unknown_J is not significant enough, removed from profile. .....examining piece 1..4768 (4768 bp) examining piece 1..13885 (13885 bp) .....examining piece 1..9237 (9237 bp) ..viterbi algorithm progress: [%]: .....examining piece .......40.examining piece examining piece ..10viterbi algorithm progress: [%]: .........1..4927 (4927 bp) .viterbi algorithm progress: [%]: ....examining piece 1..2053 (2053 bp) ..viterbi algorithm progress: [%]: .examining piece 1..4876 (4876 bp) .examining piece 1..3709 (3709 bp) ..viterbi algorithm progress: [%]: ..examining piece 1..8341 (8341 bp) examining piece 1..4324 (4324 bp) examining piece 1..2564 (2564 bp) viterbi algorithm progress: [%]: .examining piece 1..3852 (3852 bp) 20viterbi algorithm progress: [%]: .examining piece 1..2191 (2191 bp) viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: .50.........examining piece examining piece ..examining piece ..1..viterbi algorithm progress: [%]: ...examining piece 5092..15232 (10141 bp) 60examining piece 1..2056 (2056 bp) ..viterbi algorithm progress: [%]: ..30..10...examining piece 1..3481 (3481 bp) ....examining piece 1..2344 (2344 bp) 1011examining piece ....viterbi algorithm progress: [%]: examining piece .12897examining piece examining piece 50.10257220.11...2729..10167 (7439 bp) .viterbi algorithm progress: [%]: .......20..viterbi algorithm progress: [%]: ..examining piece 1..10577 (10577 bp) ......15808.......examining piece (.1.6881. (97116881.......626715808viterbi algorithm progress: [%]: .. ( bp)....3050 bp)1......19077examining piece ..........examining piece (. (2572..... (..5749.. 1...11402319077.. bp).... (....6267.9711. bp)10.2475....10.....viterbi algorithm progress: [%]: ....10...30....10..........viterbi algorithm progress: [%]: ................viterbi algorithm progress: [%]: ... bp).... ...5749...2474. (.60. (..6526......... (.viterbi algorithm progress: [%]: 2474 bp) ........ (6526 bp) viterbi algorithm progress: [%]: ...50 bp) ..viterbi algorithm progress: [%]: ......................302475.viterbi algorithm progress: [%]: bp).10. bp)...viterbi algorithm progress: [%]: .......40......20 ...........20.11127...viterbi algorithm progress: [%]: .....40.... ....60. bp)...50201030..viterbi algorithm progress: [%]: .......... ............viterbi algorithm progress: [%]: .........40.........viterbi algorithm progress: [%]: ............................30.....10..1020..........20..........10...........4010.30....60.10............10...............1020................................70.......20.......70..........7010..................................................10..10.20.10........................40..............10................20.40......5040...10....20.....20.........70...................10.............20.20........10..3020........60...10...............10....................30...............70..............50.......10....50..........803040...30.............60.........10......20..30........1020..........................10.60.................40....10............5030........40............80..........................10906030....50...20.20.......20...................10........50.........50.........30........80...20..............60...............20..30....30.............4020....20...................8010.................30....60.20.....20.........40....40................................3050.......1030.......................................30.70................60...........................10...............80..........70...........7020..704020.......50..........70......30.40...........30.....30............40....20.....90....5040..................40..............60.....80..............50..............60..100...3030....40..90....30..........40.10.............50........60...20.......5060.40..90.20.....90....70.... ..............30...10...20..............................70....30..80.......80.....60............................................30....40................4020...................................90.........70..40.50.........70.....40.....30.5040....50.examining piece 1..2085 (208530....... bp).....60......20.............100. ....8050.30.....80..........40......20.............70..........60.....90.......viterbi algorithm progress: [%]: ...40......................60..... ..40.30...50.................40............60..................70......80...........80..............................70.....20.................60......50.................20...................10..............50..100......906020.50.40..80............... ........................60.....100.....30...............8080.....50....100............90...........Warning: Block ..60100.20. ....40...70...5050..unknown_C..100...40....70.50...50........ is not significant enough, removed from profile. ...........................90....60..10060............ ... ... ...70.....90.10040........Warning: Block unknown_G is not significant enough, removed from profile. ..............................5060...30.70..90...................9080. ......90..........40..90.........10........30....50.........40..80.................100...100..30........50..80.80..50......60..100..... .....Warning: Block unknown_H is not significant enough, removed from profile. .70Warning: Block unknown_K is not significant enough, removed from profile. .Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. .......100......7050.20 . ...70Warning: Block ....6070examining piece .....unknown_I.........examining piece 1.. ......Warning: Block unknown_H is not significant enough, removed from profile. ..........70...40..............3050...... is not significant enough, removed from profile. .......70....Warning: Block ......70........11207......Warning: Block unknown_A..Warning: Block unknown_A is not significant enough, removed from profile. .....unknown_A is not significant enough, removed from profile. 30..........80...examining piece .1.........906030.....40...3356........examining piece 4942..19276 (14335 bp) ....30........90......examining piece 1..13874 (13874 bp) .90.70......... is not significant enough, removed from profile. 60. (.3356 bp) Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. viterbi algorithm progress: [%]: Warning: Block unknown_J is not significant enough, removed from profile. ...80Warning: Block unknown_M is not significant enough, removed from profile. ........21323 (10117 bp) .......examining piece 3052..11032 (7981 bp) .........viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: 9389 (9389 bp) ............80...viterbi algorithm progress: [%]: examining piece .50.2677.Warning: Block ....60....40........viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: .30.......90..............80....21994...50unknown_A.100.......... ( is not significant enough, removed from profile. examining piece .......60...19318.......examining piece examining piece ......1......examining piece 60.......... bp)...Warning: Block 1unknown_D......80.....3027.1....... is not significant enough, removed from profile. ......70..........80.............80.....20.60... .100........11479 (11479 bp) ...... .....2762.....80....Warning: Block ..90 60....12598viterbi algorithm progress: [%]: 100..90...2777.....viterbi algorithm progress: [%]: .. (... (.....10.unknown_H.......50.2762....60.. ..9572..30.90...........70. is not significant enough, removed from profile. ....... bp)..90.50.50.60 bp). (.........Warning: Block ......2777 bp) ....viterbi algorithm progress: [%]: .... .viterbi algorithm progress: [%]: ...............100..90...............80...80...100................. .....60....100..Warning: Block .unknown_B is not significant enough, removed from profile. .40..10040....................... .....unknown_J10080 is not significant enough, removed from profile. ..100Warning: Block unknown_M is not significant enough, removed from profile. ... .10...50...viterbi algorithm progress: [%]: .. ....50....70....10........100.100.... ...........90..10. 70.........Warning: Block .......70examining piece .......unknown_B is not significant enough, removed from profile. 90Warning: Block unknown_E is not significant enough, removed from profile. ..Warning: Block unknown_K is not significant enough, removed from profile. ..examining piece 1..7892 (7892 bp) .......viterbi algorithm progress: [%]: ..20..........................examining piece 1..7877 (7877 bp) ... ...viterbi algorithm progress: [%]: ..10..50...................examining piece 1..7875 (7875 bp) .70.......viterbi algorithm progress: [%]: ........examining piece 1..8276 (.8276 bp) .1..15438 (15438 bp) 100.......................viterbi algorithm progress: [%]: .........20........80.. ...... .....90...10...........20...viterbi algorithm progress: [%]: .....908060.......10...40.60...70.60..........90..................90.....20.10....20...Warning: Block unknown_A is not significant enough, removed from profile. ...30Warning: Block unknown_V is not significant enough, removed from profile. 40....3060.40.............Warning: Block unknown_B is not significant enough, removed from profile. ..................100.........30........100....examining piece 1..4887 (4887 bp) .viterbi algorithm progress: [%]: ....70........10.70. ..80...100........ 30.............10...................40.....70100.... .50.....examining piece ...1......... ...examining piece 1..14348 (14348 bp) ....90.60..........viterbi algorithm progress: [%]: .........examining piece 1..11692 (11692 bp) ....examining piece 1..2164 (2164 bp) 40viterbi algorithm progress: [%]: ....7030................100...viterbi algorithm progress: [%]: .............20..40.10.10....60.80.....Warning: Block unknown_I is not significant enough, removed from profile. ..Warning: Block unknown_H is not significant enough, removed from profile. ...Warning: Block unknown_L is not significant enough, removed from profile. .............examining piece 1..2182 (2182 bp) 20.viterbi algorithm progress: [%]: .....40..........100.............30.70......60....10.................40....30.90.........70...80.70.20........10 .3060...examining piece 1509..9758 (8250 bp) ..........examining piece 1..19909 (19909 bp) ...........Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. .....Warning: Block unknown_W is not significant enough, removed from profile. .....103050..90..........examining piece 1..151720Warning: Block ..80.................50..20.....Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. .....Warning: Block unknown_L is not significant enough, removed from profile. ........ (....50..4875..viterbi algorithm progress: [%]: . (..examining piece ....1517 bp) ..viterbi algorithm progress: [%]: ......4875. bp)..........unknown_E20 is not significant enough, removed from profile. .......Warning: Block ....1viterbi algorithm progress: [%]: . .............80...10......................80.......examining piece ..unknown_I......................examining piece 1..13612 (13612 bp) ....50..20....viterbi algorithm progress: [%]: ....1..3765 (3765 bp) .viterbi algorithm progress: [%]: ....90...............40.......60...............viterbi algorithm progress: [%]: 30...80..80.....90............60.70...4050.....examining piece . is not significant enough, removed from profile. .170.........50....6176 (6176 bp) ........viterbi algorithm progress: [%]: ............40........90....2318 (2318 bp) .80viterbi algorithm progress: [%]: .....40........20100.70..............................100........50..........10...60........80................ ....30.....100...40......10..... .10...........80........... ...........40.....1030..70...........60.60............80........10.90..........70........100..10.9030.........10........70....20........7090.....100................ ..60.80.90..10.........................................1080.examining piece 6847..20811 (13965 bp) ..........50.......Warning: Block unknown_F is not significant enough, removed from profile. ...7020...........50........80...viterbi algorithm progress: [%]: ...........20.......60.70...........10...20.........30...90.....50.........20.....90.....40........ ................Warning: Block ...90..100.unknown_C.......70.examining piece .33 is not significant enough, removed from profile. .....9010........20..................................Warning: Block ................30..20...Warning: Block unknown_F80 .....502090....unknown_J is not significant enough, removed from profile. ..50..Warning: Block unknown_N is not significant enough, removed from profile. .........609493 (9461 bp) ..Warning: Block unknown_C is not significant enough, removed from profile. ..Warning: Block unknown_F is not significant enough, removed from profile. ....Warning: Block ..100....... is not significant enough, removed from profile. ..............viterbi algorithm progress: [%]: .........unknown_H....30examining piece is not significant enough, removed from profile. . ..........408010.6020110..40.Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. ..examining piece 4034..10240 (6207 bp) ...viterbi algorithm progress: [%]: ..Warning: Block unknown_B is not significant enough, removed from profile. 30...Warning: Block unknown_H is not significant enough, removed from profile. ..100....100..30 ............20..20.examining piece 1..3133 (3133 bp) ......Warning: Block unknown_F is not significant enough, removed from profile. ........100.........40.......50...8874 (8874 bp) ..........viterbi algorithm progress: [%]: ........ .100...40..viterbi algorithm progress: [%]: .40.....examining piece ........201..... ..30....40....80.examining piece .1..6949 (6949 bp) ..............3976.40Warning: Block ....examining piece ...20... (viterbi algorithm progress: [%]: ..3976 bp)....10...100...60..........30............. ......50...20....30..5090..90 ...viterbi algorithm progress: [%]: ....... 1.5080...unknown_H...................60....50examining piece .100........100.........30. is not significant enough, removed from profile. ...........3517..190..... .....40..... (...........9397...................3517 bp) .viterbi algorithm progress: [%]: .....80.examining piece 1..8884 (8884 bp) .....................50.......70.....90..........viterbi algorithm progress: [%]: ........60100....60.......50.........70.... (9397 bp) ..80.....50...............90..............10.70....... .......10......60...............10........100..10.60.....70.....................Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ...........examining piece 1..5361 (5361 bp) ..viterbi algorithm progress: [%]: ..20..30..40....viterbi algorithm progress: [%]: ..examining piece 1..18964 (18964 bp) .........examining piece 1..2356 (2356 bp) .viterbi algorithm progress: [%]: ...30..viterbi algorithm progress: [%]: ...70....examining piece .1..3974 (3974 bp) ..viterbi algorithm progress: [%]: ..............80... ..20.1080......60.......20....20.....50.30............100.........30..90...10...........30.......30....90...examining piece 1..3517 (3517 bp) viterbi algorithm progress: [%]: .......1007070...................... 90......10.............10...30................60.......10...1070............2050.20...............40....2080....80..100....20.. ........................60..50...10.....................30..................... ................................30..........20.......90........40....6010.Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ..........40..............50........20..................80.examining piece 1..15233 (15233 bp) examining piece 706..7018 (6313 bp) ....viterbi algorithm progress: [%]: 80.........40..............50..40.......100............viterbi algorithm progress: [%]: ........90...6030.10.......... 30...40.....20...........50....10060...........30.30.3040..60.......10.....examining piece 1.10.........30.........................6099 (6099 bp) 20.....80..........viterbi algorithm progress: [%]: 6020..........60...Warning: Block unknown_D70examining piece ...1...........................20........... is not significant enough, removed from profile. ..Warning: Block unknown_H is not significant enough, removed from profile. ..................70...50.....30...........50.40................40......3577. ............40. (3577 bp) ...viterbi algorithm progress: [%]: ..........70.60...90..60......4080............4040100..90.examining piece 3104..9251 (6148 bp) .........viterbi algorithm progress: [%]: .........30......1050........examining piece ....60.90....................20........... ......100.70...70..1......30..................10.30............. .70.2284 (2284 bp) ......viterbi algorithm progress: [%]: .....................40..100...................70.90..20......5020.............50.....40..........40......... .......................50.....3010.......60.............50..........20..Warning: Block ...unknown_F..40...........80.................. is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. 80...80.....3060...50.......100.....................100..10.....40....80................................examining piece 1..10861 (10861 bp) .... ..viterbi algorithm progress: [%]: ..70100. 50.20..40.......90100 ..30...............40.....70......Warning: Block ..20.60......706050........60..unknown_A......70....30. ..Warning: Block .unknown_D is not significant enough, removed from profile. ...20..........20..90..40.examining piece 1..5277 (5277 bp) ..70 is not significant enough, removed from profile. ....Warning: Block unknown_I is not significant enough, removed from profile. .Warning: Block unknown_L is not significant enough, removed from profile. ......60.70...viterbi algorithm progress: [%]: .....4090.......20...90...............30..90....80examining piece 1..3775 (3775 bp) ...40..viterbi algorithm progress: [%]: ...50..Warning: Block unknown_B is not significant enough, removed from profile. ....Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. ....10....Warning: Block unknown_G is not significant enough, removed from profile. .............80.90........examining piece 1..2974 (2974 bp) ..70.viterbi algorithm progress: [%]: ..................................100..40....60..40..........examining piece 1..2666 (2666 bp) .viterbi algorithm progress: [%]: . .................30............................10........70....................................50...20.....10.........10............40.....80.........5080...30...............30.................10......40....30.20....100.........60.........50...........8020.70.50......................................80....... ...80.50...60....80.70........Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_G is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. ...........30...................Warning: Block unknown_C is not significant enough, removed from profile. 70................................10........50...40.50....80....30........70..................60.....40....20...30..90...............40......90..50.......40.80.....examining piece 1..2173 (2173 bp) ..100viterbi algorithm progress: [%]: ................100100.examining piece 1..4351 (4351 bp) .......viterbi algorithm progress: [%]: ..............40..4090.............50............examining piece 1..1274 (1274 bp) examining piece 1..8212 (8212 bp) ...viterbi algorithm progress: [%]: .50..10.viterbi algorithm progress: [%]: ....90....60.....90...100.........20...........................10......................70....20......70........ 80.60 .......30...50.30..60......Warning: Block .unknown_O is not significant enough, removed from profile. ....................8070...........30.90.10........5080..examining piece ............ ...........40.............examining piece 1..4784 (4784 bp) .......viterbi algorithm progress: [%]: ...30.50.50.......50100.....60......10.20....60.. ..........1....4221 (4221 bp) ..50..viterbi algorithm progress: [%]: ..............90.........40......40............80................50..70.....90....70....90.........................60....6020.......80....100100..60....Warning: Block unknown_H is not significant enough, removed from profile. ......................... ...............5070..30.80..60...30........90...50......80.............70...90....40..................60...............100.50.............50...6090.....406090...... ...100..............50...Warning: Block ......Warning: Block .......60..100.... 60.................examining piece 1..7663 (7663 bp) ......10......viterbi algorithm progress: [%]: ..unknown_C.examining piece ..........20........10 is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. ...70Warning: Block unknown_M is not significant enough, removed from profile. ........unknown_C......Warning: Block ...........unknown_B160.... is not significant enough, removed from profile. ....... is not significant enough, removed from profile. 100.....Warning: Block unknown_R is not significant enough, removed from profile. Warning: Block unknown_S is not significant enough, removed from profile. ...2878 (2878 bp) 60...viterbi algorithm progress: [%]: ............90.......Warning: Block unknown_O is not significant enough, removed from profile. .......60....70.100... 70........70........80.............80.examining piece 1..6080 (6080 bp) ..viterbi algorithm progress: [%]: .................70...10050....80examining piece ...........100....examining piece ....examining piece .60.20.80..301.....60.9070...100....3974. (3974 bp) ...viterbi algorithm progress: [%]: ... .........50... ..................10.examining piece 80..11...... ... Warning: Block unknown_C is not significant enough, removed from profile. ......................60..........20..34744162 (4162....701..... bp) 90.....40...viterbi algorithm progress: [%]: .....50..60.........12060 (12060 bp) 1060....10010.viterbi algorithm progress: [%]: ........100...Warning: Block unknown_E is not significant enough, removed from profile. .........70................70.............40..20........ (3474 bp) ..viterbi algorithm progress: [%]: ...20.....Warning: Block unknown_I is not significant enough, removed from profile. ....examining piece 416..15473 (15058.............. ............ bp) ............ 30viterbi algorithm progress: [%]: ......9030................80.100..............60...10......60.examining piece 1..4410 (4410 bp) .viterbi algorithm progress: [%]: ...Warning: Block ....80.... ......80..90.70.......unknown_C. is not significant enough, removed from profile. ...examining piece 1..5684 (5684 bp) ..viterbi algorithm progress: [%]: .Warning: Block unknown_H is not significant enough, removed from profile. ........Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. 40.....70........Warning: Block unknown_M is not significant enough, removed from profile. 90........................examining piece 1..5299 (5299 bp) ....viterbi algorithm progress: [%]: ....902070.....Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. .....Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. .....80...30...........30.40..........70....80..70.50..............9090..80.....8080...examining piece 1..3657 (3657 bp) ..viterbi algorithm progress: [%]: .........100....examining piece 1..7895 (7895 bp) ..30...1080..........70...100..100...................... .......100.....50.100...70...........10........80.....examining piece 1..8202 (8202 bp) . ...20...viterbi algorithm progress: [%]: ..........Warning: Block unknown_J is not significant enough, removed from profile. ........20.....10..... 40 ..10viterbi algorithm progress: [%]: 50...60..40Warning: Block unknown_B is not significant enough, removed from profile. ......30.Warning: Block unknown_K is not significant enough, removed from profile. ..Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ................10706050......80..90..70......examining piece ..............................70...........Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. ..examining piece 1..5152 (5152 bp) ..100viterbi algorithm progress: [%]: ...40.1............ ... ....10......80.20.90................60..90..examining piece ...8137.2010......80.examining piece ....1.40.examining piece ..1...Warning: Block .... (.8137........122831...........unknown_A.....6636..Warning: Block is not significant enough, removed from profile. bp)..40... (.........Warning: Block unknown_D is not significant enough, removed from profile. .60... (6636 bp) .....20.. viterbi algorithm progress: [%]: .10....viterbi algorithm progress: [%]: .90.....................................70..6338. (6338 bp) ......90.......................................70.20...20.........12283...80....unknown_M..........examining piece .......50...examining piece 3665..12337 (8673 bp) 10...viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: bp).....60...9030 is not significant enough, removed from profile. ..50....90...80...........90.............100.........30.......70......5030. ......100.........100..70...viterbi algorithm progress: [%]: ..................10......1.....90....10.......20..40 .............2983. (2983.70..10090....... bp) 40viterbi algorithm progress: [%]: ...examining piece 1..2989 (2989 bp) viterbi algorithm progress: [%]: .......100........... ................80......30......60........... ........70.......50..100........examining piece 1..12978 (12978 bp) 80..... ...viterbi algorithm progress: [%]: ...........60.20......90.....90.30...80.....................70............20...90. .....1002020....3070.70.60......................... ...........examining piece ....4090...10..50..30..................................80.10100..Warning: Block .....1..2155 (2155 bp) .viterbi algorithm progress: [%]: 20..4080.......10......50..unknown_E is not significant enough, removed from profile. .Warning: Block unknown_G is not significant enough, removed from profile. 90Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ....................................80...100.........10. .20..100..examining piece .279..8934 (8656 bp) ..100...50......30 ............examining piece 1..6352 (6352 bp) .....viterbi algorithm progress: [%]: ....3060.....30.......90.. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ...............viterbi algorithm progress: [%]: ..80.Warning: Block .........100.....................unknown_K... is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ..80.40........................80.90..20...........10.100...........6030. ................50........70..........90.Warning: Block unknown_D is not significant enough, removed from profile. .................. ......................3020.............100.. ..5020....10..60...40....30..3010010........40.....Warning: Block unknown_D is not significant enough, removed from profile. ...... .......40.examining piece 1..6260 (6260 bp) ......100.9080.100.................40..examining piece 1..12260 (12260 bp) 70........10 ...40...examining piece 1..2950 (2950 bp) viterbi algorithm progress: [%]: ...............viterbi algorithm progress: [%]: ..100. 50.30.80examining piece 1..5667 (5667 bp) ...60.viterbi algorithm progress: [%]: ...............90.....20..40...30....................50.60.examining piece 1690..9953 (8264 bp) .......viterbi algorithm progress: [%]: . 10...8090...40.....70......50......................90........50..viterbi algorithm progress: [%]: .....................Warning: Block unknown_A is not significant enough, removed from profile. ........60..........10.70.................70.........70.60..Warning: Block unknown_A is not significant enough, removed from profile. 100...............80.........70.10............. 40.......Warning: Block ......unknown_F is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. .....20................10Warning: Block unknown_D is not significant enough, removed from profile. ......examining piece 1..2239 (2239 bp) ...viterbi algorithm progress: [%]: 40........60..Warning: Block .unknown_I is not significant enough, removed from profile. .......60...Warning: Block unknown_Q is not significant enough, removed from profile. .Warning: Block unknown_S is not significant enough, removed from profile. Warning: Block unknown_T is not significant enough, removed from profile. ..examining piece ......80..90.............examining piece 1..4308 (4308 bp) viterbi algorithm progress: [%]: ......30...50.....20..1..12655 (12655 bp) .......10........Warning: Block unknown_A is not significant enough, removed from profile. ....................10...viterbi algorithm progress: [%]: ...50....examining piece 1..5555 (5555 bp) ..examining piece 1..2195 (2195 bp) .examining piece 1..2956 (2956 bp) .viterbi algorithm progress: [%]: examining piece 1..6428 (6428 bp) viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: ..60......10.......examining piece 1..4552 (4552 bp) 70......viterbi algorithm progress: [%]: .................Warning: Block unknown_A is not significant enough, removed from profile. ............70.....10..........................20.....20...........10.......100.80Warning: Block unknown_A is not significant enough, removed from profile. .....60.......examining piece 1..2215 (2215 bp) 90...viterbi algorithm progress: [%]: ...50..........3010....50..20................70.......90100...20.20.....3080... ..................10................20..................examining piece 5983..11409 (5427 bp) .100.....50...examining piece 1..2690 (2690 bp) ..viterbi algorithm progress: [%]: ........70..viterbi algorithm progress: [%]: ....................80. .20.30100...10....60.20. ........................40..90.10060.....30........10.......10....80. ..........100....................40......90.70..30........40..............40.........50.........40..2090........50......30..20..................20.........80..............70..20..........60...............30.100.....Warning: Block unknown_J is not significant enough, removed from profile. .... .Warning: Block unknown_Q is not significant enough, removed from profile. .30.....70.............100.............90.............3030..10........................5040......60.........100..10....... .....................8030.......................10......70.....60..30........ ........ ...9080.40.......80....40...........20..80...40...examining piece 1..3721 (3721 bp) ....viterbi algorithm progress: [%]: ............60..............702010.40 ..............40.....60.30....6030..............20............................9020............100.......examining piece 1..7344 (7344 bp) examining piece 1..7697 (7697...............viterbi algorithm progress: [%]: ..30........80...........50....100...40....90 20..40....5050 bp) ...50..viterbi algorithm progress: [%]: ...... .............30..70.....................80.....80...20........90...60......................examining piece 1..5418 (5418 bp) .......viterbi algorithm progress: [%]: ...30.examining piece 1..6852 (6852 bp) ..viterbi algorithm progress: [%]: ..10..10..................10.........4040..100....90....................................70.......30...............40.40........ ...........70..............90..40.......100.............................10.8050........70.50..................50....... ..40.100.5060Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. ...Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. ..90..50............90.................50.......................2050.........20.......50................6070............60....70.......60..20...90....80.9050.1003060.100.........................80.100....70....60.............20.........10.60........80................ .20. .................30examining piece 1..5113 (5113 bp) ...viterbi algorithm progress: [%]: ................50....50......... .Warning: Block unknown_I is not significant enough, removed from profile. 90............examining piece 1..3277 (3277 bp) ...viterbi algorithm progress: [%]: .60.. ..............examining piece 1..1975 (1975 bp) 80.viterbi algorithm progress: [%]: ........Warning: Block .3090.......50..60...40.......3090...10......70.....60examining piece examining piece .1..2977 (2977 bp) ....viterbi algorithm progress: [%]: .....70...unknown_A is not significant enough, removed from profile. ..Warning: Block ............60.unknown_D is not significant enough, removed from profile. ....Warning: Block unknown_I is not significant enough, removed from profile. .......1.........90.......70..Warning: Block unknown_J is not significant enough, removed from profile. .........80.examining piece .........80..1..30......................60...70...90.30..15141100.Warning: Block ...20..unknown_B...........80..................examining piece 1..6544 (6544 bp) ...80...viterbi algorithm progress: [%]: ......... .........70..... (...100examining piece .....10..... is not significant enough, removed from profile. .....15141...1..70..Warning: Block .unknown_C.70100..7273...... bp)10030........... is not significant enough, removed from profile. .......80..90....3097 (3097 bp) 90.........40..........viterbi algorithm progress: [%]: ........ (... .40 .....7273. bp) ...10...viterbi algorithm progress: [%]: .......... ..40....Warning: Block .100.........50..40..100.viterbi algorithm progress: [%]: .100..... ......70....unknown_A.......examining piece 1..5113 (5113 bp) ..viterbi algorithm progress: [%]: ............ ..20....100.........60..100.....7030........Warning: Block unknown_A is not significant enough, removed from profile. 100..70. is not significant enough, removed from profile. 100.10...10...40.Warning: Block .. .10... ..... . .........10...Warning: Block ...unknown_A.80..... is not significant enough, removed from profile. .unknown_A....80....90.40........20.90......80.................103070........examining piece ..90.....40............80examining piece 1..4700 (4700 bp) .examining piece 1..2359 (2359 bp) ...viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: .....examining piece 1..7359 (7359 bp) ..Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: ...examining piece 1..3718 (3718 bp). ... is not significant enough, removed from profile. ...5090..........1..6604 (6604 bp) .....viterbi algorithm progress: [%]: ..50.......100 ..........Warning: Block unknown_E is not significant enough, removed from profile. ...40...........examining piece 1..6152 (6152 bp) 20..viterbi algorithm progress: [%]: .... ............examining piece 1..9208 (9208 bp) ..........10..viterbi algorithm progress: [%]: ......viterbi algorithm progress: [%]: ............5010......5080..60.............10..20...100...........examining piece 1..12753 (12753 bp) ..................viterbi algorithm progress: [%]: ....20.... ......60...3090.100...60.............80......90......10..50.......examining piece 1 .....20...............20100...40......13039.20.....30.examining piece 1..3556 (3556 bp) viterbi algorithm progress: [%]: ...Warning: Block unknown_Q is not significant enough, removed from profile. ....80......20.............50...... (.1303980............30...Warning: Block unknown_Q............................90........ bp) ................Warning: Block unknown_D is not significant enough, removed from profile. ...10....30.. is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. .30....90...... .....viterbi algorithm progress: [%]: ....Warning: Block unknown_Q is not significant enough, removed from profile. ..........examining piece ..10...50...8030.............10.20..100..................40.1........2569...40.........examining piece .....90....40examining piece 1..3031 (3031 bp) ......viterbi algorithm progress: [%]: ..80...............examining piece 1..7382 (7382 bp) .......10.viterbi algorithm progress: [%]: ..............80......................40.....100examining piece 1..5890 (5890 bp) .70.40...viterbi algorithm progress: [%]: ...50........90 (2569 bp) .examining piece 1..3745100 (3745 bp) .. viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ... .......20...70.. 60...90........40...............20......50....1..3290 (3290 bp) 60....60....2050.10...303060.....................30....50.....................................60.50....viterbi algorithm progress: [%]: ...................50.........20.60...Warning: Block .50...60..50..unknown_M......................100..40100.... is not significant enough, removed from profile. .10......20....................Warning: Block ..1010........ ........ .....6010.20unknown_I is not significant enough, removed from profile. ....1070....30.......40Warning: Block ..............30..............................unknown_F is not significant enough, removed from profile. ..60..70.....30..............examining piece 1....20....50......20....7010070........10............. ...90.....Warning: Block ..unknown_H....60........examining piece 1..8437 (8437 bp) ...10.........viterbi algorithm progress: [%]: .......6040.............9337 (.9337 bp) 70........viterbi algorithm progress: [%]: ....4060...examining piece 707..9182 (8476 bp) ..............50.70....................80..... is not significant enough, removed from profile. .Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. ..Warning: Block ...90.70............viterbi algorithm progress: [%]: .....unknown_O. is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. ..........Warning: Block unknown_L is not significant enough, removed from profile. .........10examining piece 1..20442 (20442 bp) .100.......90............100..60..............8070.....20.....20............80....90.....40.......viterbi algorithm progress: [%]: .Warning: Block unknown_B is not significant enough, removed from profile. ...examining piece 1..3160 (3160 bp) 80.viterbi algorithm progress: [%]: ...Warning: Block unknown_H is not significant enough, removed from profile. ...70....30........80...30..........................examining piece . examining piece 1...4020...60..3070.20....... ...............20...30...70....70....examining piece .....30..40....10..13184. (.20.10...............1...............90.8268...........10..60. (.8268 bp) 70.........viterbi algorithm progress: [%]: .......90.3184 bp) ...80..80viterbi algorithm progress: [%]: .........................50...............80........3505 (.80.90...80.............3505 bp) .....100................9080..... ..............20.........viterbi algorithm progress: [%]: .....................50.10.10030............................70......30.....40..........30.....20.5040............ .............60...........90...........50....100..20..............30....90...........30.....40. ....100....40........30........50..10.10.............70...20.................30....40.80...examining piece 1..15447 (15447 bp) 100........40.........50........................ ..viterbi algorithm progress: [%]: .100.60...................90.....10.100examining piece ....2991 ....80............40.....70.....90.............80........90....... ....10..60.40examining piece 1337..16047 (14711 bp) .....50.50..308515.100.....30...........70....50..90........... (5525 bp) ..viterbi algorithm progress: [%]: ........100.50... ...60..viterbi algorithm progress: [%]: ...........Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. .50....40...........10.....90examining piece 1..11693 (11693 bp) ...40....50.............60....viterbi algorithm progress: [%]: .... ............20...examining piece 1..7015 (7015 bp) ......examining piece 1..3707 (3707 bp) .......viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: ..10.20...................40...examining piece 2127..9369 (7243 bp) ......4080.100.viterbi algorithm progress: [%]: ......................... ..100....40....................30.......................60..40.......................... ....90.....60..............10..............................80...60..70...50.4010..80.......50....6050............................70............80..9010.Warning: Block .unknown_H is not significant enough, removed from profile. .....60..100..30..30.......100................50.examining piece 1..3385 (3385 bp) 50examining piece 1..4417 (4417 bp) viterbi algorithm progress: [%]: ..70..viterbi algorithm progress: [%]: ...70100..20..60 60...80....10020.......20......... .......30..10.....Warning: Block .unknown_A.......examining piece . is not significant enough, removed from profile. .Warning: Block unknown_G is not significant enough, removed from profile. .examining piece 1..4679 (4679 bp) ..Warning: Block unknown_L is not significant enough, removed from profile. ........viterbi algorithm progress: [%]: ...............100.........180...50....6020..70.....................examining piece . ..70...8302.....90..........50.....50.......70..60........1...6077 (6077 bp) 60...viterbi algorithm progress: [%]: ...10.................... (. ..........Warning: Block ....unknown_K is not significant enough, removed from profile. ..............20....Warning: Block .......90...unknown_D..8302...........3060........4010............10..........90.................................examining piece 1..16506 (16506 bp) 2070.........70.......viterbi algorithm progress: [%]: .. bp) ....10070....viterbi algorithm progress: [%]: ..........100...90.80.20...80 ..............70.20......70.... is not significant enough, removed from profile. ........40.............20...100...60..70.........Warning: Block ....unknown_J..........60.. ....Warning: Block unknown_D is not significant enough, removed from profile. ...........60.Warning: Block unknown_S is not significant enough, removed from profile. ..20..50..........Warning: Block .80............30...10.40.......70.90...30examining piece 1..11928 (11928 bp) 80.......viterbi algorithm progress: [%]: .......2030.................70..3080..examining piece 140..12492 (12353 bp) 10...60...60viterbi algorithm progress: [%]: ...examining piece 1..3974 (3974 bp) ..90. is not significant enough, removed from profile. viterbi algorithm progress: [%]: ................20......40..............30...........................90..........examining piece 1..7261 (7261 bp) ....80....unknown_D. is not significant enough, removed from profile. .viterbi algorithm progress: [%]: .......Warning: Block unknown_N is not significant enough, removed from profile. .Warning: Block .unknown_Q is not significant enough, removed from profile. 40...Warning: Block unknown_V is not significant enough, removed from profile. ..Warning: Block unknown_Z is not significant enough, removed from profile. ......80...............90..........8040...Warning: Block unknown_A is not significant enough, removed from profile. ...20.......20........807050........10030..............10...30.......50..................................................8090. ......90......................70.......100...50..60....70........examining piece 1..6880 (6880 bp) ...80...60viterbi algorithm progress: [%]: ..100...................... .examining piece .1..3081 (3081 bp) ....viterbi algorithm progress: [%]: 100..30........50....10.40.......... ...60 ......3090..........70.......30....60.........70........80........70...50.80...........2060.................90......80.10........100.....examining piece 1..2889 (2889 bp) .viterbi algorithm progress: [%]: .......50...........10....40.............examining piece 1..8940 (8940 bp) .......30..........60.....40........10.........Warning: Block unknown_A is not significant enough, removed from profile. ..........viterbi algorithm progress: [%]: ....40......80..40..70........Warning: Block .unknown_G. is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. ...........50........60.100..90....90............10.........70....80.109040 70..100..examining piece ......... ..............examining piece 1..13894 (13894 bp) ...............viterbi algorithm progress: [%]: .......207010..examining piece 1..6134 (6134 bp) ..viterbi algorithm progress: [%]: 80..90.1..9642 (9642 bp) .50.10................ ..................10......40...30......90.................60........viterbi algorithm progress: [%]: ............90...100................20..............90........30........Warning: Block ....................examining piece 1..2606 (2606 bp) .....90......50....... ..40viterbi algorithm progress: [%]: .100..unknown_L....80....90......Warning: Block .........unknown_A......70......... is not significant enough, removed from profile. .70..Warning: Block unknown_E is not significant enough, removed from profile. .. is not significant enough, removed from profile. .80.100.......20.....60....100....... ..100.........4020..............examining piece 1..2185 (2185 bp) ......80.... .100......50..examining piece ..10.....1..9984 (9984 bp) . . ....examining piece 2977..8701 (5725 bp) ....80viterbi algorithm progress: [%]: ...90...70..80..20..80...viterbi algorithm progress: [%]: ......80.. .....909010....20....60................100..20.50............70.........viterbi algorithm progress: [%]: ..........10...........30........100............30....90..30.30...........10...........60........100...50.10050..... .....examining piece 1..3894 (3894 bp) ....80..viterbi algorithm progress: [%]: ...... ..40.....100........................90...................Warning: Block .........20..50......unknown_C is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. .1090.Warning: Block unknown_H is not significant enough, removed from profile. .70..........10..20..40....................30.60............10............................10.....9040........70...........................................50...50....8020....... .......10.20.........................20.90....100...100..60...90......60.............Warning: Block unknown_B is not significant enough, removed from profile. ....30.examining piece 1..3976 (3976 bp) 80.....viterbi algorithm progress: [%]: .. 20.........80..60........ 60..............100 70.............Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. ...................100..........70.......20.40.. Warning: Block unknown_H is not significant enough, removed from profile. .100..30..........40....8070..................20.100.................90...100...10........50............ .........50......examining piece 1..2983 (2983 bp) 3080viterbi algorithm progress: [%]: 100..30...........20.....30..... ....examining piece 1..9292 (9292 bp) 20......100..70..20.....90.....60.. examining piece 1..8919 (8919 bp) ..........viterbi algorithm progress: [%]: ............viterbi algorithm progress: [%]: .............50...........examining piece 1..2329 (2329 bp) .viterbi algorithm progress: [%]: ...........10.....70.... ...40.......100....30...90...40......examining piece 1..5626 (5626 bp) ... 20...viterbi algorithm progress: [%]: ...........90......9030.......20....examining piece 1..3832 (3832 bp) ..viterbi algorithm progress: [%]: ...30.examining piece ...30......70..examining piece 1..6359 (6359 bp) ......viterbi algorithm progress: [%]: examining piece 1..5256 (5256 bp) .......100..80.7040examining piece 1..5265 (5265 bp) .......60...examining piece ..80..viterbi algorithm progress: [%]: ......40...............3050...........examining piece .......viterbi algorithm progress: [%]: ...... ..8010....examining piece 1..4857 (4857 bp) .60..................90.1..7276 (7276 bp) ......examining piece 1..2795 (2795 bp) .1..2843 (2843 bp) viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: 1..5033 (5033 bp) ....viterbi algorithm progress: [%]: ..3050.30.80......10..50....viterbi algorithm progress: [%]: ..........................40.viterbi algorithm progress: [%]: .....examining piece ......10..............101..7564 (7564 bp) ....viterbi algorithm progress: [%]: 100...............10......5040.....80................60.................10090...........4080...............70.examining piece 1..4078 (4078 bp) .viterbi algorithm progress: [%]: ...........10........100...3020.............................10................10 .......Warning: Block unknown_A is not significant enough, removed from profile. ........examining piece 1..14846 (14846 bp) ....20................ ..........70....80.10.......20........9020.....................10.................20.......90........5090..90..100.................40.viterbi algorithm progress: [%]: ..90..50...3060.............................30..10..........30.......40.20.100...3040examining piece 1..2989 (2989 bp) .viterbi algorithm progress: [%]: .......1020..........40........examining piece .. .................... 80....50...............100.10........10............... . .1060.40.............30......examining piece 1..3097 (3097 bp) 1..3152 (3152 bp) .viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: ..20.100...20...30..30..................70.........604060..90..30...........50Warning: Block ................90100..unknown_F is not significant enough, removed from profile. ......60Warning: Block .40..unknown_A.......10......................examining piece 5159..14972 (9814 bp) ........20..........viterbi algorithm progress: [%]: ............80.......................Warning: Block .unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_E is not significant enough, removed from profile. ......40...60...20........30........ .40........................1070.....70....... is not significant enough, removed from profile. .....30Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. ........30....50..2020.........7030.......20......examining piece ...........10.20......100...Warning: Block 60..1....unknown_A.3037. (..........examining piece ......50.....7040..703037............ is not significant enough, removed from profile. ....examining piece 1.160............ bp).60.Warning: Block unknown_B is not significant enough, removed from profile. ..Warning: Block unknown_G is not significant enough, removed from profile. ............40.....40 .viterbi algorithm progress: [%]: ...... .40.....examining piece 1..3607 (3607 bp) ...viterbi algorithm progress: [%]: ...............100....50.......7718 (7718 bp) 80.....2040.viterbi algorithm progress: [%]: ...90.............Warning: Block ......unknown_E...examining piece 1..3260 (3260 bp) .50.viterbi algorithm progress: [%]: ..90..............30..........................80..................40............. .......50...... is not significant enough, removed from profile. ..........803050...60...10...40...........50...7498 (7498 bp) ......40.........5040.......50......100......20.......30........10.50 ....50.......viterbi algorithm progress: [%]: examining piece 1..3442 (3442 bp) ...viterbi algorithm progress: [%]: ..9020......7050.....60...80.....40.............30.....................Warning: Block ......90................50..................70......unknown_A. is not significant enough, removed from profile. ........90...80.....10.....60..90..100.Warning: Block 100..........1070...............10...........50.......20........30.. ..8060100.examining piece ....401unknown_B....50......60...................60..70 is not significant enough, removed from profile. ..........10........ ....Warning: Block unknown_J is not significant enough, removed from profile. .30................. .....examining piece ..70..60..........40..............10...90...........60..........Warning: Block unknown_J is not significant enough, removed from profile. ...................405290 (5290 bp) ....viterbi algorithm progress: [%]: examining piece 1..6243 (.6243 bp) .........43..10321 (10279 bp) 70..............50.viterbi algorithm progress: [%]: ......6070...6040.............20.......60.....100...20..40....20...................50............examining piece viterbi algorithm progress: [%]: 9070...20.................100....70............70........50..................20.........100.....40..80.....701..............80....................60....30.3050...70100.......10..........................70...60..............20..40.... ......90... .......80......80..30..30.100.60.....80...............8050............... .....30......8308.............30.... ... ..50....100......70examining piece .1examining piece 80...4080..1...10.......... ....80.....80....................60......4050..Warning: Block ......... (....80..........90...........90.............Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .....50......4915. (4915 bp). ...9020viterbi algorithm progress: [%]: ........2030...6040..................100............100...8308 bp) .......viterbi algorithm progress: [%]: ..5725 (5725 bp) ....unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .viterbi algorithm progress: [%]: .Warning: Block unknown_I is not significant enough, removed from profile. ......70.....100. ...50Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .30..Warning: Block .unknown_O is not significant enough, removed from profile. ...30.......... ....40.....100.....90..70..................60...... ..........90..examining piece 1..5392 (5392 bp) ........viterbi algorithm progress: [%]: ..40.....Warning: Block unknown_E is not significant enough, removed from profile. ...60...........50.......50.60...............examining piece 1..24372 (24372 bp) .................100.....90..viterbi algorithm progress: [%]: ..5090.........30...90..... ..........80.........10..50Warning: Block unknown_C is not significant enough, removed from profile. ..40......... .80.......60........100..................60......60....6020.......50...80....9040....................Warning: Block unknown_I is not significant enough, removed from profile. ....Warning: Block unknown_O is not significant enough, removed from profile. ..examining piece 1..5836 (5836 bp) .10....viterbi algorithm progress: [%]: .........examining piece 8130..21811 (13682 bp) ..70...Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. 30.Warning: Block unknown_F is not significant enough, removed from profile. .......Warning: Block unknown_J is not significant enough, removed from profile. ......30..... ......90...........70.......10.......9080......70.....50....100.........70.examining piece 1..2773 (2773 bp) ...viterbi algorithm progress: [%]: ........examining piece 1..3493 (3493 bp) 60.viterbi algorithm progress: [%]: ..90.80.80....40....................examining piece 156..6269 (6114 bp) examining piece 1..4851 (4851 bp) .....viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ......examining piece 1..4870 (4870 bp) .viterbi algorithm progress: [%]: .....40..100..Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ...Warning: Block unknown_F is not significant enough, removed from profile. ....Warning: Block unknown_I is not significant enough, removed from profile. .......10...90...70....... viterbi algorithm progress: [%]: ..60....examining piece 1..6501 (6501 bp) .viterbi algorithm progress: [%]: .............20.... ....60..............10...........50..............Warning: Block unknown_S is not significant enough, removed from profile. Warning: Block unknown_T is not significant enough, removed from profile. .Warning: Block unknown_U is not significant enough, removed from profile. ...50Warning: Block unknown_X is not significant enough, removed from profile. ........examining piece 1..11908 (11908 bp) ......10...viterbi algorithm progress: [%]: ...20.70.70..................70................10..........60......20......20.....60.........10..50..................30...30.............10070..............Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ...Warning: Block unknown_K is not significant enough, removed from profile. 90........70...40. ...........2070...100..........50..60.....10.................10.60.100.100.........70.70102070examining piece 1..6205 (......... ...80examining piece 5003..12371 (7369 bp) ...40.....50....6205......30.80...... .......................90..........100.....100..... bp) .50....viterbi algorithm progress: [%]: ...10.viterbi algorithm progress: [%]: 30.....80........ ...........90.........examining piece 1..6321 (6321 ..............100 bp).........20...80........ .................. 90..20Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .... .........100........Warning: Block unknown_R is not significant enough, removed from profile. .40....70.20...70...viterbi algorithm progress: [%]: ................40......examining piece 1..6859 (6859 bp) .......viterbi algorithm progress: [%]: .....examining piece 1..3452 (3452 bp) ...viterbi algorithm progress: [%]: ..40..100.............90..10....... ............................10.Warning: Block .unknown_A is not significant enough, removed from profile. 90.......60...............10...........90.....2010..........30.......100.......Warning: Block unknown_C is not significant enough, removed from profile. 30Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. .60..........30.........50...20..... .40.......60.......Warning: Block unknown_A is not significant enough, removed from profile. .....Warning: Block unknown_I is not significant enough, removed from profile. .....20.....50.......70......50..........Warning: Block unknown_A is not significant enough, removed from profile. ..10...80....30............... ........10080...60....................examining piece 1..5712 (5712 bp) .2010viterbi algorithm progress: [%]: ..80.80Warning: Block unknown_E.....100.80...4030.. is not significant enough, removed from profile. ........examining piece 1..6519 (6519 bp) .......viterbi algorithm progress: [%]: .........20....examining piece 1..2811 (2811 bp) .viterbi algorithm progress: [%]: ..Warning: Block unknown_A is not significant enough, removed from profile. ..examining piece 1..2197 (2197 bp) ...viterbi algorithm progress: [%]: .......4080.80.......examining piece 1..5175 (5175 bp) ..80....viterbi algorithm progress: [%]: ...................30........40.....60.20.................100.....60.....80.90..90.examining piece 1..5209 (5209 bp) ..examining piece 1..7254 (7254 bp) .viterbi algorithm progress: [%]: ....100...viterbi algorithm progress: [%]: .80.............80.90......7030.40......60.............10...50....................... .10.......30 .......10..........90... ........3060........70.10....60................Warning: Block ........40......70.........50...examining piece .unknown_A. is not significant enough, removed from profile. 30..80.10.............10.....50..Warning: Block ..40.....501.100.10........................ unknown_K is not significant enough, removed from profile. ..............10..100.......................70.Warning: Block 12797..... (examining piece .90.......90....... .....40.......5012797.........unknown_D is not significant enough, removed from profile. .... bp) .....10.Warning: Block unknown_D is not significant enough, removed from profile. .1.........40....60...10...230230..20.....80.......9090.examining piece . (...............100.......viterbi algorithm progress: [%]: ...60....examining piece ....1...............18306..70examining piece (.............80 ..............20..70.......1.....2302.20.......2050.830620........Warning: Block .....60.....80..50. bp)...2323..20...... bp) .....viterbi algorithm progress: [%]: .......examining piece 1..6335 (6335 bp) ..... (..viterbi algorithm progress: [%]: ......50.................20...2323...... ..30100.20742990.. (..7429 bp) ....viterbi algorithm progress: [%]: .....80...............40........................... ..90................... bp) viterbi algorithm progress: [%]: .....unknown_A.70.2040.examining piece 1..6778 (6778 bp) ..viterbi algorithm progress: [%]: ....60.viterbi algorithm progress: [%]: 20.40.70... is not significant enough, removed from profile. .....Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. .......1020......40......50....70..30........100..........................30..90...... ................30.............9030..........100..................90......100..examining piece 1..5100 (5100 bp) .....viterbi algorithm progress: [%]: ....40.........50.10.....5010030..... ..........Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. ..90Warning: Block unknown_J is not significant enough, removed from profile. .70..60....50..... ...100.....................40... .......50...10........90..50........60..........80......10.......................60...6060....Warning: Block ..examining piece 1..3816 (3816 bp) 100.....30...80..100. ..... .....9080...............60....1020. .Warning: Block ......unknown_C................................unknown_B............100.....3030..........20.viterbi algorithm progress: [%]: .30.70.......... is not significant enough, removed from profile. ..40..50...................30...... ........20.10.70Warning: Block unknown_A is not significant enough, removed from profile. ....Warning: Block unknown_D is not significant enough, removed from profile. ..20..60.80.Warning: Block unknown_I is not significant enough, removed from profile. ....4070.70Warning: Block unknown_K is not significant enough, removed from profile. ..........70............................20Warning: Block unknown_E is not significant enough, removed from profile. 10.40.20.... is not significant enough, removed from profile. ..20...............................30.10..examining piece 50...90...examining piece 7187..16394 (9208 bp) .70.....examining piece 1..6071 (6071 bp) ..viterbi algorithm progress: [%]: ............1..6895 (6895..80....viterbi algorithm progress: [%]: ..examining piece 1..9867 (9867 bp) .................viterbi algorithm progress: [%]: .....examining piece .1....30........... bp).Warning: Block unknown_D is not significant enough, removed from profile. ...80100100....viterbi algorithm progress: [%]: ...................... .60.......................examining piece 1..4191 (4191 bp) .70...70....80..............40..........Warning: Block unknown_A is not significant enough, removed from profile. .......Warning: Block unknown_L is not significant enough, removed from profile. ..10..........examining piece 1..3081 (3081 bp) ...viterbi algorithm progress: [%]: ...3090..9050...70.......10.....10080...6050.30...... ..60......40..................100....viterbi algorithm progress: [%]: ....30.60...........40...90...40.80.......40..70.20...30.... ..................6782......90.............examining piece 1..1286 (1286 bp) ......10 (6782 bp) ..... ..viterbi algorithm progress: [%]: .....50viterbi algorithm progress: [%]: ...30....80.....................90.60...80......Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. .20.........60....................40................100...........40examining piece ...80..100...50. .........examining piece 1..4804 (4804 bp) .......viterbi algorithm progress: [%]: .....70..1..3572 (3572 bp) .10...viterbi algorithm progress: [%]: ................... ...20...90...1070.........100....40.20......90.................. .......50...................................60......30.............................Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. ...30.70.........90.........40..1040....................80.....10....examining piece 1..2464 (2464 bp) .viterbi algorithm progress: [%]: .......20.....100..........3050..........60..10.......30.80.100.......30...70.801070............90....50Warning: Block ..examining piece ...unknown_G...5010...50......10..........20..........Warning: Block ..140... ...... is not significant enough, removed from profile. ..............90.20.......50.....unknown_C70.. is not significant enough, removed from profile. .............examining piece .......Warning: Block ....60..................40.......2070....................unknown_E is not significant enough, removed from profile. ..Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. 40.Warning: Block unknown_L is not significant enough, removed from profile. .Warning: Block unknown_N is not significant enough, removed from profile. ......8080.....examining piece ....100........60..........10....................50......30 ...... .1..5722 (5722 bp) ...90..viterbi algorithm progress: [%]: ..401..9352 (9352 bp) ...100.30..viterbi algorithm progress: [%]: .....................90.........90....50....20.examining piece 1..2446 (2446 bp) ..viterbi algorithm progress: [%]: ..... 90.......60.80...........10020..100.......20............ 90.........20............80...20................5187. (............60.5187...........Warning: Block unknown_B is not significant enough, removed from profile. ........70.. bp) ......Warning: Block unknown_D is not significant enough, removed from profile. ..Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: ....70...Warning: Block unknown_U is not significant enough, removed from profile. .......30..90.30........40................70.....20................8080................60....4060..40......30.......... ...........1090...10.......50.5070...............60.examining piece 40.....40...........examining piece 80.1....100..60..........30.10..examining piece 6880..14766 (7887 bp) 60....40..............70.............70100........4756 (4756 bp) ....... viterbi algorithm progress: [%]: ........9030viterbi algorithm progress: [%]: ....................80......30..1......20..................50...8422 (8422 bp) ....examining piece 1..8576 (8576 bp) 30.............viterbi algorithm progress: [%]: ...50....viterbi algorithm progress: [%]: ....50........70... ................90.........80.....60......50..............60..........Warning: Block .unknown_F100 is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_I is not significant enough, removed from profile. ............50...40......70......20..90....40.......70.40.......100.100.70.Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. 50..80....... . .70...............90....100.100..examining piece 1..10608 (10608 bp) ..viterbi algorithm progress: [%]: .....80......40.....70.30...........examining piece 2832..10923 (8092 bp) ... ...30............10080..100.Warning: Block ............... .....50 ..................Warning: Block ..unknown_A is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. 80.. .....60100.....5020......80......unknown_I is not significant enough, removed from profile. . ...90...viterbi algorithm progress: [%]: ...........................examining piece 1..3106 (3106 bp) .viterbi algorithm progress: [%]: ......80....30..40................10.... ..........10...60..80.......40................................50..examining piece 1..3183 (3183 bp) ..........viterbi algorithm progress: [%]: ....70.....90....Warning: Block 60unknown_E is not significant enough, removed from profile. .........100..........100..............9080....Warning: Block unknown_H is not significant enough, removed from profile. .90..40.. 80....10.100......90..50.....80....10........examining piece 1886..8942 (7057 bp) ..90..40.....................60.examining piece 1..7333 (7333 bp) ........viterbi algorithm progress: [%]: .80. .30...50.......20.........100...40......6060..............viterbi algorithm progress: [%]: ............ 50.......10.............examining piece ..2090.40...Warning: Block ..............Warning: Block ..........50....60..........Warning: Block unknown_U is not significant enough, removed from profile. .........................unknown_E is not significant enough, removed from profile. ....60.170............100......examining piece 1..8219 (8219 bp) Warning: Block unknown_B is not significant enough, removed from profile. .10examining piece 1..6071 (6071 bp) ....viterbi algorithm progress: [%]: 8809 (8809 bp) .....viterbi algorithm progress: [%]: .....70viterbi algorithm progress: [%]: ..70..10.....50... ..... ......60.unknown_B.10040.............examining piece 1..6163 (6163 bp) .......viterbi algorithm progress: [%]: ..90.........30........... 10 is not significant enough, removed from profile. examining piece .1...4347 (4347 bp) ..viterbi algorithm progress: [%]: ...Warning: Block unknown_I is not significant enough, removed from profile. ...............10...60examining piece 1..4132 (4132 bp) ......viterbi algorithm progress: [%]: 70.......70.90.10.............examining piece 1..5969 (5969 bp) ...50..90..60viterbi algorithm progress: [%]: .............90.........................80.....70...80..100...100.....20......20..30............20............ . ........100.50Warning: Block unknown_A..examining piece ....60.50.....40.20.70..........50........ ............10....90..........Warning: Block unknown_G is not significant enough, removed from profile. .101........70.60..................... is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ..Warning: Block ....90.......20......10Warning: Block unknown_Lunknown_H.....10. is not significant enough, removed from profile. 60....Warning: Block unknown_C is not significant enough, removed from profile. 10Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. ........Warning: Block unknown_N is not significant enough, removed from profile. ..........20....80......20....50...Warning: Block unknown_T is not significant enough, removed from profile. .30..... is not significant enough, removed from profile. 90.examining piece 1..3717 (3717 bp) .....viterbi algorithm progress: [%]: ...............90.....10.........................80.80........100................80...examining piece .1.........2857examining piece (1..23752857 bp) .20viterbi algorithm progress: [%]: ..................20Warning: Block .100.100. (examining piece 30.2375....80......examining piece 60.11100.10..examining piece .1..50 .unknown_B is not significant enough, removed from profile. 90.Warning: Block unknown_K is not significant enough, removed from profile. 90.... bp) ..viterbi algorithm progress: [%]: .......60.......9298 (9298 bp) ........30.viterbi algorithm progress: [%]: ....40..................20........60.8853 (8853 bp) ......3726 (3726 bp) .80................ ............20.30......7070.......40.....examining piece .1..2827 (2827 bp) .....viterbi algorithm progress: [%]: .7090......20100...........20.. viterbi algorithm progress: [%]: ..7324 (7324 bp) ..examining piece 5006..17265 (12260 bp) .viterbi algorithm progress: [%]: ........viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: ....60..................................30.... ........10.100...............10.....30........90...............50.8020......................................10..10....30.....40.................................100....Warning: Block unknown_M is not significant enough, removed from profile. Warning: Block unknown_N is not significant enough, removed from profile. ...70.50.80...30..90...70..Warning: Block ... ..20................. .....100unknown_E.40..20.........Warning: Block unknown_I is not significant enough, removed from profile. . is not significant enough, removed from profile. ......603030..................examining piece 1..3697 (3697 bp) ......viterbi algorithm progress: [%]: ..............................30..405040.......20..................10........100..70Warning: Block .unknown_M is not significant enough, removed from profile. ..Warning: Block unknown_N is not significant enough, removed from profile. 40Warning: Block unknown_O is not significant enough, removed from profile. ....Warning: Block unknown_T is not significant enough, removed from profile. .30.Warning: Block .. ...30...............................examining piece .100.40.20......40...............Warning: Block unknown_A is not significant enough, removed from profile. ..Warning: Block unknown_E is not significant enough, removed from profile. ..90100. ..50............70.70..10.................80..20......40.......60100 ......examining piece 1..9364 (9364 bp) ..7030.Warning: Block unknown_D is not significant enough, removed from profile. .viterbi algorithm progress: [%]: .....50....90.5030..80.............. ..................4010.Warning: Block 9050.1..unknown_B10.. is not significant enough, removed from profile. ..Warning: Block unknown_D is not significant enough, removed from profile. .......20.........Warning: Block unknown_R is not significant enough, removed from profile. .....60...90......10....60.......unknown_E.............90..............examining piece ....80......40.................50..40... ....examining piece 1..6127 (6127 bp) ....10.....50....examining piece 1..11694 (11694 bp) .......30......10538. is not significant enough, removed from profile. ........1.viterbi algorithm progress: [%]: ...30..100Warning: Block ....70.60.examining piece (..unknown_G.. is not significant enough, removed from profile. ....50..........examining piece 10538 bp) ........................30........60........30...viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: ......100....50..7050...........10701080...5167..10924 (5758 bp) .80..examining piece 2123..8919 (6797 bp) .40.viterbi algorithm progress: [%]: .......viterbi algorithm progress: [%]: ........2080...... .............................30..examining piece 1..17317 (17317 bp) .... 60...90..1.80.....2392...40..40.................... (2392 bp) .60.........viterbi algorithm progress: [%]: ..........40.........100..............80..80..100......20...viterbi algorithm progress: [%]: ......examining piece 2123..12707 (10585 bp) ...........10.. 9040......70.viterbi algorithm progress: [%]: .........50.............40...............20...10.70....11981......... (.....100. ...............60.....10.60..20......60............... ................50...20.60........60..examining piece 1..2983 (2983 bp) ..viterbi algorithm progress: [%]: .100........20......11981 bp) ...60...10........80....40.....................50...80.....viterbi algorithm progress: [%]: ..........examining piece 1..7536 (7536 bp) .............20...90........viterbi algorithm progress: [%]: .......50........10.......60........90........................70...20.......30...............80......60.50..100..30..100.20...90..90.....Warning: Block .. 100.. ........50......30.90....50...............10....... ...unknown_B. is not significant enough, removed from profile. ..Warning: Block unknown_F is not significant enough, removed from profile. 70. examining piece 1..4583 (4583 bp) 90.....50...80...60.....70..................30............................................70.......examining piece 3169..12714 (9546 bp) ..20.30...100......30...................viterbi algorithm progress: [%]: .........209080...viterbi algorithm progress: [%]: 10..........40...................20.......30..70........30.............8010.....70.....8040...............40........100............... ...Warning: Block unknown_A is not significant enough, removed from profile. ....Warning: Block unknown_H is not significant enough, removed from profile. 70................100.....50.............60...........100..90..40...........80.........90.............60......40.Warning: Block unknown_C is not significant enough, removed from profile. ... .90... ...............7010.........40...................... ..70..90.............30....50.100....60..........1050.....80.......... ........................examining piece 1..8787 (8787 bp) examining piece 1..1493 (1493 bp) viterbi algorithm progress: [%]: ...1050...viterbi algorithm progress: [%]: .........100..100....40..............1030........100.30......100....90100.... ....50.80.....40. ......20....10....1008050examining piece 1..6514 (6514 bp) ....viterbi algorithm progress: [%]: ....20......Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ........20. ....40.... ...... .7080.....20...................................30...........50..................100....20...40.....60......90..... ..50...................Warning: Block unknown_B is not significant enough, removed from profile. 60.........60.....50. ....70..........................Warning: Block unknown_B is not significant enough, removed from profile. 50..8070...Warning: Block .......examining piece 1..3003 (3003 bp) .viterbi algorithm progress: [%]: .......60.unknown_B is not significant enough, removed from profile. ......10.....60..30examining piece 70...80..20.90.10..40examining piece 1..3098 (3098 bp) viterbi algorithm progress: [%]: .1043..9104 (8062 bp) Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L.......viterbi algorithm progress: [%]: .......60..............70........3030.....90.........70...........10examining piece 1..2708 (2708..30.examining piece 1..3456 (3456 bp) ..90.viterbi algorithm progress: [%]: .......60.60..............examining piece 1..1794 (1794 bp) .viterbi algorithm progress: [%]: 100....... is not significant enough, removed from profile. 60..20.examining piece 1..8105 (8105 bp) ............................. bp) ..viterbi algorithm progress: [%]: .100......9030.......70.. ......Warning: Block unknown_D is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: .60.........examining piece 1..9404 (9404 bp) ........viterbi algorithm progress: [%]: ......20. ......Warning: Block unknown_A is not significant enough, removed from profile. ............20..........60..........30.10......40..70...4040...80.........Warning: Block Warning: Block unknown_A is not significant enough, removed from profile. unknown_A is not significant enough, removed from profile. ..........70..70.....7020.70............................50.examining piece 1..9697 (9697 bp) .40...90......................................examining piece 1..4214 (4214 bp) ..viterbi algorithm progress: [%]: .....examining piece 1..8745 (8745 bp) ..20.viterbi algorithm progress: [%]: ...9080.........40...30examining piece 1..2983 (2983 bp) .viterbi algorithm progress: [%]: .....40..........20.....examining piece 1..1438 (1438 bp) .viterbi algorithm progress: [%]: .....80.......80.....10.70.5070..............10................10...............................examining piece 1..8709 (8709 bp) ..7060...........viterbi algorithm progress: [%]: ..90....examining piece ......100examining piece 1..6452 (6452 bp) ..Warning: Block unknown_T is not significant enough, removed from profile. Warning: Block unknown_U is not significant enough, removed from profile. 40..Warning: Block unknown_W is not significant enough, removed from profile. ..30.viterbi algorithm progress: [%]: Warning: Block unknown_AB is not significant enough, removed from profile. .90Warning: Block unknown_AJ is not significant enough, removed from profile. ....Warning: Block unknown_AN is not significant enough, removed from profile. .................................50...100...1....3710 (3710 bp) ..viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ....1010.........50....50..50.30................. ....................examining piece 1..3974 (3974 bp) ....viterbi algorithm progress: [%]: ..10............80.............60. 70....80..........20.10.......90.10.............3020.......30.............90................................30........60.........................40...40...............100.10........100..10.70...........................50...20................60.......20.......5020. ...40 .....10.70.Warning: Block .unknown_A....80.70......80..............90.....................40.........40.........1060...90...20......90...............1050.30...........70.........................................100..30.80100.......8010030..80.......20.. is not significant enough, removed from profile. ...80........ .20. .............20....60.................100..40..................................100......20.. .......30..Warning: Block unknown_J is not significant enough, removed from profile. .70..70.60.9070.. .................50............Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. 40Warning: Block unknown_G is not significant enough, removed from profile. ..Warning: Block unknown_L is not significant enough, removed from profile. .........50...100................90.....10..20.20. .........30.30. ...examining piece ................60......50....30.....................Warning: Block 3040......40examining piece examining piece 59971..examining piece ..60...100..1.........16757 (10761 bp) .......30.....8070.viterbi algorithm progress: [%]: examining piece 1..2941 (2941 bp) .....viterbi algorithm progress: [%]: ....80......30.....50....20..Warning: Block 1.....2257....unknown_G........80................9760 (9760 bp) .Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. 80Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. ...unknown_C is not significant enough, removed from profile. Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. .Warning: Block unknown_K is not significant enough, removed from profile. .Warning: Block unknown_L is not significant enough, removed from profile. ....Warning: Block unknown_O is not significant enough, removed from profile. ............80..... (2257 bp) viterbi algorithm progress: [%]: ..10.........804050....90..40........ is not significant enough, removed from profile. .80......90 ..viterbi algorithm progress: [%]: .9984..30............examining piece 1..3634 (3634 bp) ......viterbi algorithm progress: [%]: ..............examining piece 1..3172 (3172 bp) 50....80.....80...........60...10......examining piece 1..2485 (2485 bp) 60..20...40..... (9984 bp) .....viterbi algorithm progress: [%]: ...examining piece 1..4334 (4334 bp) .90..viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: 90..40.............40.......20..100.............................50.... 60..90examining piece 1..9822 (9822 bp) ...40.10...40..100......viterbi algorithm progress: [%]: ...............................4010..............30100..............................50.......80... ...50.....100.10.....viterbi algorithm progress: [%]: ..............90.....50.........30....10................50...............60............ ..........Warning: Block unknown_F is not significant enough, removed from profile. ...........50..70...40.........70...100... ...60..........60.................60...70.20 .60....30.....10...........90......70.....examining piece 2088..7275 (5188 bp) .examining piece 1..3793 (3793 bp) ....viterbi algorithm progress: [%]: .....20...Warning: Block ...40......20............................70......viterbi algorithm progress: [%]: .................60.10050.50............60........80.50.........30........70.....70..........100....20.80unknown_G is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. ..Warning: Block unknown_L is not significant enough, removed from profile. ........20....100..examining piece 1..6983 (6983 bp) .9090..6050..viterbi algorithm progress: [%]: .......100.............90..20...........30..70...................10.......examining piece 10...10.........60........90.............. ..........1........70...... ......40....Warning: Block .unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. .50Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. . 90...30....100...70. ..examining piece ..........50.......3074..............90...1503.....80..........60 (10021...... (.......3040.............100. .....3074...examining piece ..........8519.Warning: Block ... bp)1.10...30 bp)10...60.... ........3518 (3518 bp) .... unknown_J is not significant enough, removed from profile. viterbi algorithm progress: [%]: .50...viterbi algorithm progress: [%]: .........viterbi algorithm progress: [%]: .............70...30............70100.8060.60....................80. ..40.80..................5070....................................9070....60.............50examining piece examining piece ..1Warning: Block .unknown_G.....70....1.examining piece ... is not significant enough, removed from profile. 20..........100.90.........2983.20..7030...3568. (3568 bp) viterbi algorithm progress: [%]: .................10....1... (...2983 bp) .10.examining piece 1..10393 (10393 bp) viterbi algorithm progress: [%]: 10.....20..viterbi algorithm progress: [%]: .examining piece 1209..7340 (6132 bp) ............viterbi algorithm progress: [%]: ...40..80....... .examining piece 1..6804 (6804 bp) ....40...viterbi algorithm progress: [%]: .....20.....7371....90.70........100......... (................7371 bp) .... .viterbi algorithm progress: [%]: ..................60......206010....100.80....30...40................examining piece 1..4352 (4352 bp) .... viterbi algorithm progress: [%]: .........60......................90......90......1070.................30................50.........80...90........80.10..70......Warning: Block ...40.......Warning: Block .unknown_A..8080.. is not significant enough, removed from profile. ....10080.......10.90.1010.80.........50.....unknown_C. is not significant enough, removed from profile. ..100....20....30.................20...Warning: Block unknown_B is not significant enough, removed from profile. .. Warning: Block unknown_E is not significant enough, removed from profile. ..80... Warning: Block unknown_L is not significant enough, removed from profile. .Warning: Block unknown_M is not significant enough, removed from profile. ...10..10070............................................................60......100......20........40..........40.........70... .9050examining piece .examining piece 20...1.. ....90............30..101.1005020.....30Warning: Block ..80..............20examining piece .10..unknown_A....7093.....3019 (3019 bp) ........... (7093 bp) ..80..............1..4040..viterbi algorithm progress: [%]: .......2016 (2016 bp) viterbi algorithm progress: [%]: ......................20viterbi algorithm progress: [%]: .......60.... is not significant enough, removed from profile. ..80....90...90.............................90..........................20....9010.....30................8060..20.40 ..examining piece 1..6933 (6933 bp) ...............viterbi algorithm progress: [%]: .........60.....................100.........8090.....50.50...30...8090..........20...........90.50....Warning: Block ...........30...10.30....50....10........100......40.......60...70.... examining piece unknown_F......100...........................50...20......60....................30 ............30....70.............20..............20....2341..9354 (7014 bp) ..40.......viterbi algorithm progress: [%]: 80.........30................30.........30....40 is not significant enough, removed from profile. ....................................100.Warning: Block unknown_F is not significant enough, removed from profile. .100.....10..304030....60.....70.70..........90.......10....................... 60...20examining piece 1..5809 (5809 bp) ....50...viterbi algorithm progress: [%]: .....40........examining piece 1..5602 (5602 bp) .......90...............30...70.......examining piece 1..3923 (3923 bp) ..viterbi algorithm progress: [%]: ......809070..30.... ...100........100.10......viterbi algorithm progress: [%]: .100.....60...100.....20....... ............ ..20..............90.. .... ............ ...........60.........50...............40..40........80...50..Warning: Block unknown_D is not significant enough, removed from profile. ......Warning: Block unknown_K is not significant enough, removed from profile. ............10040.....10.40.........9040examining piece 1..9585 (9585 bp) .6020.....60.examining piece .100.100..80...70..viterbi algorithm progress: [%]: ....... ..30.... 1............10.....examining piece .1.....60.70.............4983 (4983 bp) .......viterbi algorithm progress: [%]: ....7070...40. .........30..9050......509270......................examining piece 3886..14098 (10213 bp)........................Warning: Block unknown_D is not significant enough, removed from profile. ............ (........5092 Warning: Block unknown_K is not significant enough, removed from profile. ....50.8080...............90....5040...40. bp).....40.examining piece .viterbi algorithm progress: [%]: ........ ...30..viterbi algorithm progress: [%]: ...............5010....30.........20.......40...10examining piece 1..3252 (3252 bp) ...viterbi algorithm progress: [%]: ....50..90..........20...80Warning: Block unknown_M is not significant enough, removed from profile. Warning: Block unknown_N is not significant enough, removed from profile. .90...............60............examining piece 1..13838 (13838 bp) .................70.viterbi algorithm progress: [%]: .examining piece 1..3222 (3222 bp) 80.viterbi algorithm progress: [%]: ...........20.100........30......40.7090...60100.100.......................1...40........... ..6446 (6446 bp) .90.......50viterbi algorithm progress: [%]: .80.examining piece 1..7551 (7551 bp) .....30....viterbi algorithm progress: [%]: .......examining piece ......................50.............. ...................60..........examining piece 1..9364 (9364 bp) ....20...100......viterbi algorithm progress: [%]: ..70.50..........190..60.....100 ..............10.70.......80... ....10.................10....................examining piece 1..17815 (17815 bp) ......30.................viterbi algorithm progress: [%]: ..1040......60.2531.60.... ..80.....................50...20...100.40.70..40......70...50....20.............. (....30..60.......70...........253160examining piece ........90.. bp) ......................50.50..90180....70....80.6262.. (..6262 bp) ......viterbi algorithm progress: [%]: ..............Warning: Block unknown_H is not significant enough, removed from profile. .......100.50..................3010..... ..........Warning: Block ....100..........................20...unknown_M is not significant enough, removed from profile. ...............80...10.......viterbi algorithm progress: [%]: 10.....30100..100...........80..40.40...90..40.......examining piece 1..8448 (8448 bp) ............viterbi algorithm progress: [%]: ..........90...10.80..50........80..........20...........100.......90.........90. .....60.100.........70.........20...............70..............508040 .100........ 40.....10...................................50....60..................10060....70..10. ...20........70....80..9060...Warning: Block unknown_A is not significant enough, removed from profile. ...Warning: Block unknown_F is not significant enough, removed from profile. .........10...50........examining piece 1..2662 (2662 bp) 60.30..50..20.90.......viterbi algorithm progress: [%]: ...Warning: Block unknown_K is not significant enough, removed from profile. ..50....... ....10...30...30....................50.examining piece 5080..1.90............100....... ....examining piece 1..8826 (8826 bp) examining piece .1..2490 (2490 bp) ...viterbi algorithm progress: [%]: ..viterbi algorithm progress: [%]: ............... ....examining piece 1..15990 (15990 bp) ...............20viterbi algorithm progress: [%]: ...7030..20..................1867 (1867 bp) ...80...60.........60......................90.........Warning: Block unknown_A is not significant enough, removed from profile. 20................10.....1070....100...viterbi algorithm progress: [%]: ........80....60........ 10.....examining piece 1..5834 (5834 bp) ....viterbi algorithm progress: [%]: .examining piece 3904..14116 (10213 bp) ...............................viterbi algorithm progress: [%]: ...70.20.100.10.........examining piece 2206..13226 (11021 bp) 30examining piece 1..5670 (5670 bp) ....viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: .......Warning: Block unknown_A is not significant enough, removed from profile. ............3040...........60................. .60....90..40.examining piece .1.....examining piece .5060.50...........90.80.....40100........1......100...examining piece 104..13706 (13603 bp) ..2375 (2375 bp) ...viterbi algorithm progress: [%]: ............viterbi algorithm progress: [%]: . .30.70..2551 (2551 bp) ..viterbi algorithm progress: [%]: .examining piece 1..3977 (3977 bp) ..70...... viterbi algorithm progress: [%]: ...............70..............20.80.80.............10...20........60..................20........30..........60..........80......70.60...30..........................10...........70....1040.............40............100................examining piece 1..5495 (5495 bp) ..........70................20....2040...examining piece 1..6211 (6211 bp) ...viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: ...... ...80..903080............50..........70......30.......examining piece 1..5608 (5608 bp) .10........viterbi algorithm progress: [%]: .....10.........40...........90...................50..60...10..............20...............50..10..............100...90.90................70..............Warning: Block unknown_D is not significant enough, removed from profile. ...........100...20...40......207050..........4090..............70.3060.90..........50.......100.....40......60.......5010............8080...............................100..20.....30examining piece 1..9144 (9144 bp) .........6060...80.....viterbi algorithm progress: [%]: ...........examining piece 1..3105 (3105 bp) ........viterbi algorithm progress: [%]: .......................................80.........20...10.30.. ...............10.40. .........10.50.....................3060...... .................30........10...60.........100.........70 .........2090.....70...50....70........... ...............40..............20........80.........100..20.....4080............ ..10.90...........90...90.........90.......................80..5030.4070..50.....10......50................20.........................80....40.60.....Warning: Block unknown_B is not significant enough, removed from profile. ..30.10070.........................30..60...50...................................20..90..........3050......90.................60.......100....50..............7080.....60............80.40.50.70...100............ ...60. ..........40.........20...40.........80..............................8090.............................. ....100......80..80........60.30.....100..50.......examining piece ..100....80.20....examining piece .....60..100.1..6324 (6324 bp) examining piece 1..2559 (2559 bp) ..120..14764 (14764 bp) viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: ..90.100 ...906090examining piece .....100.. .......70......1..6339 (6339 bp) ..10.. 20......90.30viterbi algorithm progress: [%]: .90.100..70...............viterbi algorithm progress: [%]: .. .....70.....examining piece .. ..........50..60....1. ............90.............examining piece 1..7011 (7011 bp) .........................30..60.viterbi algorithm progress: [%]: ..30.Warning: Block ...2440.70.90..100............ (2440 bp) ...viterbi algorithm progress: [%]: ..........80.examining piece 1..6850 (6850 bp) ........70............ 100............10....80.70.........100....viterbi algorithm progress: [%]: ............. 60..10......unknown_L is not significant enough, removed from profile. .90...........70.........30 ..100...10.................70..40......40...........examining piece 4260..10373 (6114 bp) .... .20.........viterbi algorithm progress: [%]: ........90.....Warning: Block ..........................100.40..100examining piece 1..5711 (5711 bp) .viterbi algorithm progress: [%]: unknown_F is not significant enough, removed from profile. .....10090..20..40...100...examining piece ..... .60....80....70........Warning: Block ..2070..... 1. ...90.30...30unknown_G..examining piece 80.examining piece 3482....80..1. (examining piece 10.. is not significant enough, removed from profile. ........1... .........90...examining piece .1..4434 (4434 bp)examining piece .40....3482......70...90Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. ...........Warning: Block unknown_M is not significant enough, removed from profile. ..............70examining piece 1..2878 (2878 bp) ..100..viterbi algorithm progress: [%]: ...............10.examining piece 1..2553 (2553 bp) .viterbi algorithm progress: [%]: ................ ....1 bp)..viterbi algorithm progress: [%]: ..100.examining piece .. .10.1...20.viterbi algorithm progress: [%]: ...............80...Warning: Block .....413950.. (.....3974 (........unknown_I is not significant enough, removed from profile. ..........5413 (413980..10538054133974.... bp).50 30............... (5380 bp) 40... bp) ..examining piece 1..5687 (5687 bp) ..viterbi algorithm progress: [%]: .80...30.20100.30.1.................. bp).70... ........viterbi algorithm progress: [%]: ......... ....30................viterbi algorithm progress: [%]: 50....100viterbi algorithm progress: [%]: .................examining piece .........Warning: Block 10....40.52781.....5080.........90.......90.....40.....20.... ....viterbi algorithm progress: [%]: ..............examining piece 1..2869 (2869 bp) ...viterbi algorithm progress: [%]: ....40....unknown_E.50. (.90.....10....5278..40..... bp).. is not significant enough, removed from profile. 40...20..examining piece 1..4487 (4487 bp) .....viterbi algorithm progress: [%]: ..................10...30....50..80..60.Warning: Block unknown_C is not significant enough, removed from profile. ........................Warning: Block unknown_C is not significant enough, removed from profile. ...Warning: Block unknown_H is not significant enough, removed from profile. ........20.....70.80........2020 .........viterbi algorithm progress: [%]: 100......100.30..100................... ...9020..........5961......10...............50.......90....50.40.......10... (5961 bp) ........viterbi algorithm progress: [%]: ..examining piece 1..14854 (14854 bp) Warning: Block ..unknown_E..examining piece 100.........80.............10....2010.60..viterbi algorithm progress: [%]: ...............30.........50........3090......60..1030...1............Warning: Block .................60..............100...... ..30..4862....60.unknown_Iexamining piece 100 (.......50.....90..........50.......... ...... is not significant enough, removed from profile. ...4862...... .. bp) .......viterbi algorithm progress: [%]: .......1....10 10100..10..30.......10...... ..90....80..........3987 (3987 bp) .viterbi algorithm progress: [%]: .......30.......4020.50...Warning: Block unknown_A is not significant enough, removed from profile. .....40 is not significant enough, removed from profile. ..10...........6020.............90..........................20..20.10.....90....70......40............................60.....examining piece .........100...1007020..1..3337 (3337 bp).10........... ..........80......40examining piece 1..6768 (6768 bp) .20..viterbi algorithm progress: [%]: .....60........Warning: Block unknown_D is not significant enough, removed from profile. viterbi algorithm progress: [%]: .........Warning: Block unknown_Q is not significant enough, removed from profile. 40.......Warning: Block unknown_N is not significant enough, removed from profile. ......Warning: Block unknown_N is not significant enough, removed from profile. ........50...............90examining piece 1..5074 (5074 bp) .....viterbi algorithm progress: [%]: .........50...20................20...........20.10....60.examining piece 1..14434 (14434 bp) .........80....20....viterbi algorithm progress: [%]: .........5070..... examining piece 1..3293 (3293 bp) ...viterbi algorithm progress: [%]: .....20........50.60........100...80.40. ....30....................80...................30........30..30..........40...10..................examining piece 1..6142 (6142 bp) .....100.viterbi algorithm progress: [%]: ...............50... ..examining piece 1..examining piece ...70...40......30......... ........examining piece ..7077.. (....1...4154 (................7077 bp) 80...90...viterbi algorithm progress: [%]: ...........30...60.....30.50...626...1030.......20.1070.404154..... bp) .viterbi algorithm progress: [%]: ....................40......10....40.......40.90.6040...6070............60.......40....100examining piece ............6090...60100...........18568 (17943 bp) ....................10..1.viterbi algorithm progress: [%]: ..............30. .......80....70examining piece .........7408.........70................... (examining piece 1..examining piece . .7408100. bp).18020......50.......28556 (10537 bp) .30.....90....1..2045 (2045 bp) .viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: ....2050.......50...20............. ........viterbi algorithm progress: [%]: ...............examining piece 641..19387 (18747 bp) ..........100..70..50....100.. ...10......9277...... (.....80......9277 bp) 10.......viterbi algorithm progress: [%]: .........20.....70.........30............ ...........50.70. .viterbi algorithm progress: [%]: ........603050.....60..............70.......50....40.10.....................60.60....................40...50...40..60..............20..........70.......20examining piece ....Warning: Block ....641..........unknown_F.40..40..90.1020 is not significant enough, removed from profile. .examining piece 19387... (.18747 bp) .......................130..........examining piece .1..3957 (3957 bp) .....viterbi algorithm progress: [%]: ...........1080......20...40..........viterbi algorithm progress: [%]: ........10......30......60...70.....60...............30....70......examining piece examining piece ...10....2027..70...90..50................80...80.......90..... (.......30.8133....10......2027. bp) ..viterbi algorithm progress: [%]: 70.......80.......................26879 (18747 bp) 10306010................1..7046 (7046 bp) ..100...viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: ......70....40.....70.50...80...................................................30......20......50...20.....20......... ........100.30..........50......8040...60...80....50..........70...............80.....30.......................20..20................70..............20.....50............. 80.80.............90.......50....90100...10...60..10.......90.......80........... ..........4070........80.30................6030..10..80.......60....40...............50....20...examining piece 1..8156 (8156 bp) .......40....viterbi algorithm progress: [%]: ...................40.......90......Warning: Block unknown_A is not significant enough, removed from profile. ............................5090.1010090........60.......90.....70....10..............30...........20....................80..40........ ......examining piece .....20.......1....4281 (4281 bp) ...viterbi algorithm progress: [%]: 30.......100...20...60.....70.... ....70...................examining piece .....70...1.20...40.90..........607115...100....................60...................... ....100... (7115 bp) ..........viterbi algorithm progress: [%]: ......40.......80...100.....100.20..90..5050........ ..70..........Warning: Block .............90.. 40......40.. 3010.............3040.unknown_B is not significant enough, removed from profile. 80...................70...............90.30....50......50........................10..............................90..80........40....70.........90.50...........30....6010..........40..........80...............60.............100......70.100........................examining piece .1..6383 (6383 bp) ...viterbi algorithm progress: [%]: .....8010.....90.............1008060..Warning: Block unknown_D is not significant enough, removed from profile. ...30....40.100...100... ..50........ .. ......80100..60.examining piece 1..3681 (3681 bp) examining piece 1..2428 (2428 bp) ...viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ...50............... 60......70....50..2060examining piece 901..7139 (7139 bp) ..viterbi algorithm progress: [%]: 40....30......................examining piece 1..6615 (6615 bp) ....viterbi algorithm progress: [%]: ................. .100....................100.............8050.50Warning: Block unknown_I is not significant enough, removed from profile. .....50.... .30.........40...20.90....70....................80.....................Warning: Block unknown_F is not significant enough, removed from profile. ...Warning: Block unknown_I is not significant enough, removed from profile. ... ....10..80.......60....60...90.........20.70.....examining piece 1..5450 (5450 bp) ...... viterbi algorithm progress: [%]: ......90...............10....20..............examining piece 1..2213 (2213 bp) viterbi algorithm progress: [%]: .examining piece 1..7390 (7390 bp) ..70...60...........20..70.80..90.examining piece 5010...........viterbi algorithm progress: [%]: ...........40...................30.......6020....60..100............................ ..........10.70.....................1....20..30...40............2377 (2377 bp) ..............................examining piece 1..14547 (14547 bp) ..90.100.70..viterbi algorithm progress: [%]: examining piece 3889..17326 (13438 bp) ..........103090..viterbi algorithm progress: [%]: .............80.......viterbi algorithm progress: [%]: .....Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. .70...............60....10..60....80.....80.100....60..50.......100 ....100.20.....10..............70. ...........20...............examining piece ....80......... ......7080..100...30...20 ..........90........10..........50.............30. 40......20...........90Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. 50Warning: Block unknown_Q is not significant enough, removed from profile. ....examining piece 1..3766 (3766.........40...30.....60.................100...............examining piece ..100....50.............20........30.......80..................1examining piece .....80.Warning: Block unknown_A is not significant enough, removed from profile. ........ .80.20.90.......30............9030.90......50.40.................30.100... bp) .....16773...viterbi algorithm progress: [%]: ..........70..5384 (5384 bp) ..40....... (6773 bp) 100..40.9090..viterbi algorithm progress: [%]: ..10..100.Warning: Block unknown_A is not significant enough, removed from profile. viterbi algorithm progress: [%]: ...........30..1..11655 (11655 bp) ...........viterbi algorithm progress: [%]: ..... ..... .......90. ............100..............................30......100........ 6050....70..... .... .10.90..100........60....70..40.. ..70...............40.examining piece 80........90examining piece 1..............7508 (7508 bp) .20.............80..100.1.10..examining piece viterbi algorithm progress: [%]: 1..2726 (.902726......examining piece ..50..............50..50....Warning: Block unknown_C is not significant enough, removed from profile. .70....Warning: Block unknown_K is not significant enough, removed from profile. .. bp) ..........6736 (6736 bp) ... ...viterbi algorithm progress: [%]: ....40........60...........examining piece ....40..10.10viterbi algorithm progress: [%]: .........................examining piece ..1examining piece ..40..1...60..50........6651....30......3007..10.examining piece .examining piece .90...... (examining piece ........40..1.....1201...... (...........6617 (6617 bp)..........66511..15262 (15262 bp) 70....100..examining piece 1. bp)...100viterbi algorithm progress: [%]: .3007...Warning: Block ..20.. bp)..1.100...20....2484.... .unknown_H.. ..........30.60 .. (3238.viterbi algorithm progress: [%]: .. is not significant enough, removed from profile. 8079..viterbi algorithm progress: [%]: ......... (...80.......100.... 80 .3238.........11724.30 (...viterbi algorithm progress: [%]: ..2484..... bp). bp)Warning: Block .8090... (...... .viterbi algorithm progress: [%]: ..........unknown_I. is not significant enough, removed from profile. .70 .......... 807980 bp) 20examining piece 1..13129 (13129 bp) .........viterbi algorithm progress: [%]: ......3060....50.....10..viterbi algorithm progress: [%]: ..10..70...60..viterbi algorithm progress: [%]: .........50..90....90..................11724............... bp) 50......viterbi algorithm progress: [%]: ...........60...examining piece ...40...............30...........70.....10.......................1..6337 (6337 bp) ..........100.............70..examining piece 50....90.examining piece ...20.viterbi algorithm progress: [%]: 20.........examining piece 10..1.1................10.....70.40.....40..............1..3420 (3420 bp) 10....viterbi algorithm progress: [%]: ...2010..Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. ....Warning: Block unknown_H is not significant enough, removed from profile. .....4020.............10....................50....30.70..............1008824 (8824 bp) 1010...........10.40.20.......100.viterbi algorithm progress: [%]: .....80.80.............5786.......90....examining piece 1..3219 (3219 bp) ..............50.....90....... ..viterbi algorithm progress: [%]: ....... ..70............60..80100.40.........70..... (5786 bp).. .60..viterbi algorithm progress: [%]: .....examining piece ......90.80..............1..........60......30... .....30................80....60..20.80.....30...........100....................80........20........Warning: Block ..unknown_B... is not significant enough, removed from profile. 20..100Warning: Block ...............................3050....40..103232 (3232 bp) 10.........100.....100............. ...........20............. ...50...........40...90..30......7060...unknown_C10....40. viterbi algorithm progress: [%]: ..40..20...... is not significant enough, removed from profile. 5090..examining piece .1....................90...............8411 (8411 bp) .70..5090.... ...viterbi algorithm progress: [%]: .............Warning: Block .examining piece ...............70.unknown_U..1020.60.80...........100.............50......90.20................... 60......40..............30.1..6349 (6349 bp) ..Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. ...30......viterbi algorithm progress: [%]: .30.60.................................40Warning: Block unknown_F is not significant enough, removed from profile. .....Warning: Block ...unknown_F........2030..70......1080...10....................examining piece 1..3319.....50.examining piece is not significant enough, removed from profile. 30....Warning: Block unknown_W is not significant enough, removed from profile. .................10..............80......... is not significant enough, removed from profile. .10.. (.3319.... bp).examining piece ..................60.1..........30.......5928. (5928 bp) 60....100viterbi algorithm progress: [%]: ...1.....100.....90Warning: Block unknown_F is not significant enough, removed from profile. .....Warning: Block unknown_S is not significant enough, removed from profile. 30100 Warning: Block unknown_W is not significant enough, removed from profile. Warning: Block unknown_Y is not significant enough, removed from profile. 80.....20..... .11570. (11570 bp) viterbi algorithm progress: [%]: ....30....20.......80........10....examining piece 1..2638 (2638 bp) ..examining piece .1..11231 (11231 bp) .........2060.20.........20.......100.........5070 .40..80.viterbi algorithm progress: [%]: .. ....examining piece 1..7603 (7603 bp) .50......... .40.....80........viterbi algorithm progress: [%]: ...examining piece ....50....2070.viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: 100......................................90..........70....50.........20...1..11438 (11438 bp) ......40..40......viterbi algorithm progress: [%]: 90........70.30............50...........10.......40.............70.............3040........................10......60....60.40...........50.......... ..60.............80...100...............90....9050.. ...............20..........10...100.........................80..........40.......Warning: Block unknown_A is not significant enough, removed from profile. ....Warning: Block unknown_G is not significant enough, removed from profile. ......60.............7070.60...20...60...70............. 80.............30...8050.70........20...Warning: Block unknown_P is not significant enough, removed from profile. .Warning: Block unknown_R is not significant enough, removed from profile. Warning: Block unknown_S is not significant enough, removed from profile. ....70..examining piece 1..2635 (2635 bp) .viterbi algorithm progress: [%]: ...examining piece 1..2518 (2518 bp) ....viterbi algorithm progress: [%]: .90.........30..................30....90...10.......20..........Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_H is not significant enough, removed from profile. .........100.....................40..40...90......80..80....50..9050...........80.....80..............70..examining piece 1..6646 (6646 bp) .....viterbi algorithm progress: [%]: .............50.......Warning: Block unknown_A is not significant enough, removed from profile. ................100..........5090..90..................50..........examining piece 901..15126 (15126 bp) .........examining piece 1..3259 (3259 bp) ...viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: ...60..... 60... ...........90.......................examining piece .1..2293 (2293 bp) 60viterbi algorithm progress: [%]: ..........90..60............10.30................10.examining piece 1..3417 (3417 bp) ..10...100.viterbi algorithm progress: [%]: .....70.90............1010.....30...10080.............. 100..........40.....20...90...40...........................100...10030...... ...50.................70.40....................7050...10....... 2020......100...30..........50...60.......40.80........30.30... ..60.10........10.......................................60.100......50....Warning: Block .unknown_F is not significant enough, removed from profile. ...... .30 ....Warning: Block unknown_L is not significant enough, removed from profile. ...208030.9020...........100.............80................Warning: Block ..60...40...........100.......... 60.....examining piece 1..2811 (2811 bp) ..viterbi algorithm progress: [%]: ....Warning: Block unknown_D is not significant enough, removed from profile. ........70.3040................10.................80.30...10....... 40.30..........70......examining piece 1..5044 (5044 bp) ....unknown_A is not significant enough, removed from profile. viterbi algorithm progress: [%]: ..........examining piece ...100.......90.....Warning: Block unknown_E is not significant enough, removed from profile. .......30............100...........examining piece 1..5302 (5302 bp) ......100.60...........70.viterbi algorithm progress: [%]: .....50..7050examining piece 1..7424 (7424 bp) 50....viterbi algorithm progress: [%]: .......4010...................100......60...... .............70......6020...................1..6034 (6034 bp) 50. .viterbi algorithm progress: [%]: ..........Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .....Warning: Block unknown_H is not significant enough, removed from profile. ..80..60...9020..80 .....20...........40....80Warning: Block unknown_G is not significant enough, removed from profile. .......................30....80...................70..........10.60.......90....50..........40............................................10.100..20...30............80..70...50....80.........examining piece 3235..9780 (6546 bp) 70....20.viterbi algorithm progress: [%]: ...90.... .....examining piece 1..2749 (2749 bp) ..viterbi algorithm progress: [%]: .....Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. examining piece 1284..7952 (6669 bp) ...80..viterbi algorithm progress: [%]: ............examining piece 1..2334 (2334 bp) 90viterbi algorithm progress: [%]: Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. ............................examining piece 1..7266 (7266 bp) .......examining piece 1..6185 (6185 bp) ..20viterbi algorithm progress: [%]: ...100.viterbi algorithm progress: [%]: ...40100.40.....40.....80........40...7030.... ..60.60....... ..90.......40.20.....100........50...........50 50.40Warning: Block unknown_B is not significant enough, removed from profile. ....examining piece 4367...60.......90.....................examining piece 1..5324 (5324 bp) .....viterbi algorithm progress: [%]: 60.....1030........70.....90..........9060..............examining piece 1..5559 (5559 bp) ....12228 (7862 bp) .viterbi algorithm progress: [%]: .60.....viterbi algorithm progress: [%]: .......examining piece 1..3920 (3920 bp) ....viterbi algorithm progress: [%]: .......................40..........30.........40.....90...........90.........100......100...................Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. .70.50........Warning: Block unknown_J is not significant enough, removed from profile. ..Warning: Block .unknown_O. is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. .........70 40...10...........70..60...........10.................40..10........10.....60.10...20examining piece 1..2677 (2677 bp) ........20...70viterbi algorithm progress: [%]: .................................10.....40...................50... ....examining piece 1..............examining piece 1..8054 (10..10.......80......90..50......80.....8054 bp) .......viterbi algorithm progress: [%]: ........examining piece ...70....Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. ..........80...20.......50..80..........80......20100.1....100.9706.. (...9706 bp) .....5010......4604 (4604 bp) ......viterbi algorithm progress: [%]: .......1002020.......examining piece 5247..20394 (15148 bp) ............ .viterbi algorithm progress: [%]: .....30..viterbi algorithm progress: [%]: ..50.. ......20....90.................................30...........60..................40.....60.........10..........50.6050...807060.........40...30.90...60.........................100........70.50.....20....................50.......80....20..........20....20...........90.........30........examining piece 1..4184 (4184 bp) ....viterbi algorithm progress: [%]: ....70...............100..50....20.. ......70.. ...................10.............90.......90Warning: Block unknown_C is not significant enough, removed from profile. ........Warning: Block unknown_I is not significant enough, removed from profile. ...30.....20....30.30..........100...30.....................70......20.70.........30.70........100..80.30.......90.....10..60.Warning: Block unknown_H is not significant enough, removed from profile. ....30.examining piece ................. ........ .10..70.Warning: Block ............60.1....90..50...........................unknown_H.10......10...60........40...30...80..40..........70.......20.....60.10...5040..50................30.70......60..80. .90.....100......examining piece 8817 (........100... is not significant enough, removed from profile. .8817.40..............40..30.. bp)1.. .............. ........................ ...viterbi algorithm progress: [%]: .......3894 (3894 bp) ......10viterbi algorithm progress: [%]: ......examining piece 1314..6832 (5519 bp) ......30..examining piece 1..3976 (3976 bp) ..viterbi algorithm progress: [%]: ....40.20viterbi algorithm progress: [%]: ............100...100...........60.............50........60.... 60.....40....80............... ............70.......10..20.....70.......20.........90.8070..................30.100examining piece 1..8232 (8232 bp) ...examining piece 1..2558 (2558 bp) .viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: .............10..80..40 ...................examining piece 1..4512 (4512 bp) ........90...viterbi algorithm progress: [%]: ............1008020.........10....................examining piece ..1.40..100..................70... ...40.........10... ........50......................100.........80...10..........20...80....70....10...Warning: Block 6543....80..unknown_B..30....30.. (50............... .........20.4090 is not significant enough, removed from profile. ..Warning: Block unknown_C is not significant enough, removed from profile. .50.40..................10.Warning: Block ....30....6543 bp) ....40..viterbi algorithm progress: [%]: ....unknown_V is not significant enough, removed from profile. ..7080.....................50..2050.........................90...............20.....20.................80...10......209020.......100.........80..................60...60..60100......50.............. .........50..........60......70................50...........30..60...2060.....40...90.20.70.....30..examining piece 60..... .40...7060......40.............30..30...30............30........................90.80............70.........1............90........................10......................70....30.20.....90.40.....50...............60.................100...............40......100.............. ...100...5030............40.50...6994 (6994 bp) ..............3080viterbi algorithm progress: [%]: ..............3060.....5080.50....70.30........80....40...........50.............................50..........60............60.30...........70......70........ .........50...60..... .70............4050..............70.90.60....................80.50......70....................60...........40...6090...40.......70....40....90........20..80....................100.70..............80.............8090................ ..........................50...........................................70...8040........80.40.......40..60....100..80......70..100...80.80......80...........................70 ..100.....100....... ..........90.60......70.....50.....60...........6080....80..90.......... ............... .......30........70..................9010090........10...........80....80.... ......70....50..............80................50.100.9090..........50......100.80...........50......70.........40......... ... .....60.......90...80.....70...70..........60.................4060.....90.........10060....70.....100.20....100....................................90...6080.......80.90..100.7050.... .....90.............. ...90.70............ 100100...60...90...... .........60.........80..................100.70..........90. ..60. ...... ..80....100........................90..........80..7070...30.....90...........100........... .......50....80.......80....90...50.......................90.... ..100......... ....80...10040..9080......100.... .........90......70...........100.....9090..100.. 90...... . .........90.....................80....90...90....100............100........100...40..... ....... ......60.....80........100..100...... ... 70....100....90.90........ ..80100..70.....100.100.. 90.50.9050... ... .......................................70.....100....60..90........... ................100.60..10080..60.... 80.8090. ...70..........................................90..100100.........70.. .80...................100.....100...7090 ...90...90......80............................100...100...100. 90 .80.................10090100. ... ....100 100 Will create parameters for a EUKARYOTIC species! creating directory /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/ ... creating /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg ... creating /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_weightmatrix.txt ... creating /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_metapars.cfg ... The necessary files for training BUSCO_Olurida_maker_busco_4077874286 have been created. Now, either run etraining or optimize_parameters.pl with --species=BUSCO_Olurida_maker_busco_4077874286. etraining quickly estimates the parameters from a file with training genes. optimize_augustus.pl alternates running etraining and augustus to find optimal metaparameters. # Read in 272 genbank sequences. Quantiles of the GC contents in the training set: 0% 0.322 5% 0.335 10% 0.34 15% 0.344 20% 0.347 25% 0.349 30% 0.35 35% 0.352 40% 0.353 45% 0.355 50% 0.356 55% 0.359 60% 0.361 65% 0.364 70% 0.365 75% 0.367 80% 0.371 85% 0.374 90% 0.381 95% 0.392 100% 0.447 HMM-training the parameters... i= 0 bc= (0.237, 0.263, 0.263, 0.237) ** building model for exons *EXON* gene g1.t1 transcr. 1 in sequence Contig32884:3029-5979_1-2950: Single exon gene does not begin with start codon but with ata gene g1.t1 transcr. 1 in sequence Contig24838:4946-14128_1-9153: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig322:112-5530_698-3887: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig83031:0-9706_1-9706: Initial exon does not begin with start codon but with tat gene g1.t1 transcr. 1 in sequence Contig38375:1010-6334_1-5324: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig59170:82-7270_1-5280: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig1475:18420-21215_1-2795: Initial exon does not begin with start codon but with att gene g1.t1 transcr. 1 in sequence Contig22929:0-7139_1-7119: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig49244:512-5439_603-4570: Initial exon does not begin with start codon but with gct gene g1.t1 transcr. 1 in sequence Contig62671:10969-16013_1-5044: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig56075:6839-14163_1-7324: Initial exon does not begin with start codon but with agt gene g1.t1 transcr. 1 in sequence Contig2444:5176-12566_550-7228: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig58282:0-10523_1-4515: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig36016:4303-20350_337-16047: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig1932:15980-27012_2618-11032: Initial exon does not begin with start codon but with act gene g1.t1 transcr. 1 in sequence Contig40278:16479-20889_1-4410: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig34055:20746-30730_1-9504: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig177657:176-3744_1-3568: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig26022:8217-28201_5931-15578: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig44020:3956-20091_2512-10132: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig28446:14981-29329_61-14088: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig22263:25833-31517_1-5028: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig1273:11214-26186_8864-14960: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig50181:18283-26420_1-8137: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: Initial exon does not begin with start codon but with gca ExonModel::processInternalExon: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig15298:0-9604_1-5408: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig15330:0-6544_604-4897: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig67312:620-3369_42-2716: Single exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig19930:1124-10962_1081-8567: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29639:10004-20612_1-10280: Initial exon does not begin with start codon but with ggt gene g1.t1 transcr. 1 in sequence Contig4753:0-11762_229-6970: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig37911:1839-10052_69-6407: Initial exon does not begin with start codon but with cgt gene g1.t1 transcr. 1 in sequence Contig29670:400-20794_4564-20392: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig28490:8352-12514_1-3710: Initial exon does not begin with start codon but with cat gene g1.t1 transcr. 1 in sequence Contig37588:33560-39450_16-5860: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29580:579-15343_2-13442: Initial exon does not begin with start codon but with gta gene g1.t1 transcr. 1 in sequence Contig2341:256-11694_333-11438: Initial exon does not begin with start codon but with acg gene g1.t1 transcr. 1 in sequence Contig46760:2974-7557_9-4583: Initial exon does not begin with start codon but with gaa gene g1.t1 transcr. 1 in sequence Contig26838:3984-16267_1-11974: Initial exon does not begin with start codon but with cct gene g1.t1 transcr. 1 in sequence Contig32086:33156-42493_1-9293: Initial exon does not begin with start codon but with ggc gene g1.t1 transcr. 1 in sequence Contig32086:33156-42493_1-9293: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig47514:0-7551_1-7551: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig25952:9109-16825_4-7716: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig54624:0-19276_6441-18303: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig107429:1628-7977_1-5951: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig21559:0-8884_1-8884: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig42247:5153-23721_1335-13762: Initial exon does not begin with start codon but with tgt gene g1.t1 transcr. 1 in sequence Contig99370:0-2016_1-2016: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig22581:0-9711_1-9703: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig60517:0-4334_1-4334: Initial exon does not begin with start codon but with ggt gene g1.t1 transcr. 1 in sequence Contig43141:3162-6322_1-3160: coding length not a multiple of 3. Skipping... start codon frequencies: ATG(225) # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) number of bases in the reading frames: 71807 72025 72036 --- frame = 0 --- minPatSum = 233 --- frame = 1 --- minPatSum = 233 --- frame = 2 --- minPatSum = 233 --- initial frame = 0 --- minPatSum = 233 --- initial frame = 1 --- minPatSum = 233 --- initial frame = 2 --- minPatSum = 233 --- internal exon terminal frame = 0 --- minPatSum = 233 --- internal exon terminal frame = 1 --- minPatSum = 233 --- internal exon terminal frame = 2 --- minPatSum = 233 single, initial, internal, terminal mean exon lengths : 1014 135 115 202 single exon : 22 initial exon 0 : 82 initial exon 1 : 67 initial exon 2 : 53 internal exon 0 : 507 internal exon 1 : 315 internal exon 2 : 286 terminal exon : 214 Frequency of stop codons: tag: 60 (0.254) taa: 68 (0.288) tga: 108 (0.458) end *EXON* Storing parameters to file... Writing exon model parameters [1] to file /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_exon_probs.pbl. WARNING: parameter --cpus has value 56 but parameter --kfold has value 8. --kfold limits the number of --cpus that can be used. Will not use only 8 CPUs. Please abort and restart with --kfold=56 to really use that number of CPUs! Splitting training file into 8 buckets... Reading in the meta parameters used for optimization from /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/generic/generic_metapars.cfg... Reading in the starting meta parameters from /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 starting accuracy: 0.8390, 0.8434, 0.5351, 0.6151, 0.0991, 0.0925, -1.00, -1.00, starting target: 0.6041 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 4 3 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 1 2 3 4 targets 0.5768 0.5770 0.5970 0.6041 improving parameter /Constant/dss_start curently set to 3 1-3 /Constant/dss_start: checking values 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 4 7 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8522, 0.8408, 0.5623, 0.6278, 0.1135, 0.1062, -1.00, -1.00, optimal target: 0.6165 changing /Constant/dss_start to 2 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 3 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation values 1 2 3 targets 0.6037 0.6165 0.6041 /Constant/dss_start: checking values 2 retrieve accuracy from previous computation values 2 targets 0.6165 improving parameter /Constant/ass_start curently set to 3 1-3 /Constant/ass_start: checking values 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8547, 0.8349, 0.5819, 0.6410, 0.1068, 0.1012, -1.00, -1.00, optimal target: 0.6214 changing /Constant/ass_start to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 2 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation values 1 2 3 targets 0.6214 0.6206 0.6165 improving parameter /Constant/ass_end curently set to 2 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 found improvement: 0.8591, 0.8329, 0.5853, 0.6370, 0.1104, 0.1032, -1.00, -1.00, optimal target: 0.6222 changing /Constant/ass_end to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 100 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 8 4 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 4 targets 0.6156 0.6222 0.6214 0.6192 0.6073 /Constant/ass_end: checking values 1 2 retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 targets 0.6222 0.6214 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 1 13 25 37 50 targets 0.5552 0.6178 0.6212 0.6183 0.6166 improving parameter /IntronModel/d curently set to 100 100-950 /IntronModel/d: checking values 100 312 525 737 950 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8569, 0.8400, 0.5860, 0.6485, 0.1107, 0.1056, -1.00, -1.00, optimal target: 0.6256 changing /IntronModel/d to 312 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 312 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8554, 0.8401, 0.5871, 0.6508, 0.1143, 0.1095, -1.00, -1.00, optimal target: 0.6268 changing /IntronModel/d to 525 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 525 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8551, 0.8412, 0.5879, 0.6545, 0.1143, 0.1092, -1.00, -1.00, optimal target: 0.6278 changing /IntronModel/d to 737 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 3 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 100 312 525 737 950 targets 0.6222 0.6256 0.6268 0.6278 0.6274 /IntronModel/d: checking values 525 631 737 843 949 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 525 631 737 843 949 targets 0.6268 0.6277 0.6278 0.6273 0.6274 improving parameter /IntronModel/ass_motif_memory curently set to 3 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8594, 0.8399, 0.5946, 0.6552, 0.1176, 0.1114, -1.00, -1.00, optimal target: 0.6303 changing /IntronModel/ass_motif_memory to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 3 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 0 1 2 3 targets 0.6147 0.6303 0.6280 0.6278 /IntronModel/ass_motif_memory: checking values 1 retrieve accuracy from previous computation values 1 targets 0.6303 improving parameter /IntronModel/ass_motif_radius curently set to 3 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8611, 0.8420, 0.5974, 0.6583, 0.1178, 0.1117, -1.00, -1.00, optimal target: 0.6321 changing /IntronModel/ass_motif_radius to 0 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 0 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8601, 0.8401, 0.6008, 0.6598, 0.1180, 0.1121, -1.00, -1.00, optimal target: 0.6327 changing /IntronModel/ass_motif_radius to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 3 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 4 targets 0.6321 0.6327 0.6273 0.6303 0.6274 /IntronModel/ass_motif_radius: checking values 1 2 retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 targets 0.6327 0.6273 improving parameter /ExonModel/tis_motif_memory curently set to 3 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 found improvement: 0.8673, 0.8319, 0.6056, 0.6530, 0.1365, 0.1243, -1.00, -1.00, optimal target: 0.6352 changing /ExonModel/tis_motif_memory to 0 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 0 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 found improvement: 0.8699, 0.8354, 0.6124, 0.6587, 0.1658, 0.1519, -1.00, -1.00, optimal target: 0.6443 changing /ExonModel/tis_motif_memory to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 2 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 0 1 2 3 targets 0.6352 0.6443 0.6381 0.6327 /ExonModel/tis_motif_memory: checking values 1 retrieve accuracy from previous computation values 1 targets 0.6443 improving parameter /ExonModel/tis_motif_radius curently set to 2 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8681, 0.8356, 0.6118, 0.6594, 0.1726, 0.1578, -1.00, -1.00, optimal target: 0.6454 changing /ExonModel/tis_motif_radius to 1 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 15 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 1 2 3 targets 0.6386 0.6454 0.6443 0.6435 /ExonModel/tis_motif_radius: checking values 1 retrieve accuracy from previous computation values 1 targets 0.6454 improving parameter /Constant/trans_init_window curently set to 20 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0 6 12 18 25 targets 0.6358 0.6435 0.6411 0.6412 0.6431 improving parameter /Constant/init_coding_len curently set to 15 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 found improvement: 0.8709, 0.8346, 0.6103, 0.6570, 0.1803, 0.1616, -1.00, -1.00, optimal target: 0.6460 changing /Constant/init_coding_len to 0 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 0 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 found improvement: 0.8654, 0.8355, 0.6109, 0.6614, 0.1801, 0.1649, -1.00, -1.00, optimal target: 0.6467 changing /Constant/init_coding_len to 9 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 5.0 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 0 4 9 13 18 targets 0.6460 0.6433 0.6467 0.6452 0.6419 /Constant/init_coding_len: checking values 5 7 9 11 13 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 5 7 9 11 13 targets 0.6463 0.6449 0.6467 0.6419 0.6452 improving parameter /ExonModel/patpseudocount curently set to 5.0 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8750, 0.8357, 0.6160, 0.6589, 0.1728, 0.1559, -1.00, -1.00, optimal target: 0.6470 changing /ExonModel/patpseudocount to 0.5 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 0.5 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8724, 0.8337, 0.6208, 0.6620, 0.1875, 0.1704, -1.00, -1.00, optimal target: 0.6508 changing /ExonModel/patpseudocount to 1.625 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 0.5 1.625 2.75 3.875 5 targets 0.6470 0.6508 0.6482 0.6482 0.6467 /ExonModel/patpseudocount: checking values 0.5 1.0625 1.625 2.1875 2.75 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8709, 0.8357, 0.6194, 0.6648, 0.1875, 0.1707, -1.00, -1.00, optimal target: 0.6512 changing /ExonModel/patpseudocount to 2.1875 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.3 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation values 0.5 1.0625 1.625 2.1875 2.75 targets 0.6470 0.6498 0.6508 0.6512 0.6482 /ExonModel/patpseudocount: checking values 1.625 1.90625 2.1875 2.46875 2.75 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 1.625 1.90625 2.1875 2.46875 2.75 targets 0.6508 0.6505 0.6512 0.6483 0.6482 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 2 5 7 10 targets 0.6512 0.6512 0.6512 0.6512 0.6512 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 targets 0.6512 0.6512 0.6512 0.6512 improving parameter /Constant/intterm_coding_len curently set to 5 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 3 6 9 13 targets 0.6495 0.6505 0.6465 0.6469 0.6458 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.3 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8711, 0.8359, 0.6199, 0.6653, 0.1911, 0.1737, -1.00, -1.00, optimal target: 0.6521 changing /ExonModel/slope_of_bandwidth to 0.325 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 5.0 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6500 0.6483 0.6521 0.6509 0.6513 /ExonModel/slope_of_bandwidth: checking values 0.1875 0.25625 0.325 0.39375 0.4625 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation values 0.1875 0.25625 0.325 0.39375 0.4625 targets 0.6483 0.6502 0.6521 0.6518 0.6509 improving parameter /ExonModel/minwindowcount curently set to 10 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 4 8 11 15 targets 0.6477 0.6495 0.6500 0.6506 0.6521 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.5 2.125 3.75 5.375 7 targets 0.6521 0.6521 0.6521 0.6521 0.6521 improving parameter /IntronModel/patpseudocount curently set to 5.0 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 found improvement: 0.8711, 0.8372, 0.6199, 0.6666, 0.1911, 0.1751, -1.00, -1.00, optimal target: 0.6527 changing /IntronModel/patpseudocount to 7 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.4 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... values 0.5 2.125 3.75 5.375 7 targets 0.6491 0.6505 0.6508 0.6521 0.6527 /IntronModel/patpseudocount: checking values 5.375 5.78125 6.1875 6.59375 7 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 5.375 5.78125 6.1875 6.59375 7 targets 0.6521 0.6521 0.6521 0.6521 0.6527 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.4 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 found improvement: 0.8711, 0.8374, 0.6199, 0.6670, 0.1911, 0.1751, -1.00, -1.00, optimal target: 0.6528 changing /IntronModel/slope_of_bandwidth to 0.325 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.325 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6526 0.6519 0.6528 0.6523 0.6513 /IntronModel/slope_of_bandwidth: checking values 0.1875 0.25625 0.325 0.39375 0.4625 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8714, 0.8380, 0.6204, 0.6676, 0.1911, 0.1746, -1.00, -1.00, optimal target: 0.6531 changing /IntronModel/slope_of_bandwidth to 0.25625 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00173 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation values 0.1875 0.25625 0.325 0.39375 0.4625 targets 0.6519 0.6531 0.6528 0.6527 0.6523 /IntronModel/slope_of_bandwidth: checking values 0.1875 0.221875 0.25625 0.290625 0.325 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation values 0.1875 0.221875 0.25625 0.290625 0.325 targets 0.6519 0.6528 0.6531 0.6530 0.6528 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 2 4 6 8 targets 0.6529 0.6531 0.6531 0.6528 0.6528 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6531 0.6531 0.6531 0.6531 0.6531 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6530 0.6495 0.6509 0.6483 0.6474 improving parameter /IntronModel/dssneighborfactor curently set to 0.00173 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 8 4 5 found improvement: 0.8749, 0.8370, 0.6236, 0.6674, 0.1875, 0.1701, -1.00, -1.00, optimal target: 0.6533 changing /IntronModel/dssneighborfactor to 0.00505 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8801, 0.8357, 0.6328, 0.6698, 0.1875, 0.1696, -1.00, -1.00, optimal target: 0.6562 changing /IntronModel/dssneighborfactor to 0.01 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.23 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6433 0.6525 0.6533 0.6532 0.6562 /IntronModel/dssneighborfactor: checking values 0.007525 0.00814375 0.0087625 0.00938125 0.01 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 0.007525 0.00814375 0.0087625 0.00938125 0.01 targets 0.6532 0.6534 0.6539 0.6543 0.6562 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 100 225 350 475 600 targets 0.6522 0.6555 0.6500 0.6502 0.6486 improving parameter /Constant/probNinCoding curently set to 0.23 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8801, 0.8364, 0.6328, 0.6701, 0.1875, 0.1696, -1.00, -1.00, optimal target: 0.6563 changing /Constant/probNinCoding to 0.2 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 20 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 values 0.15 0.175 0.2 0.225 0.25 targets 0.6554 0.6554 0.6563 0.6562 0.6561 /Constant/probNinCoding: checking values 0.175 0.1875 0.2 0.2125 0.225 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation values 0.175 0.1875 0.2 0.2125 0.225 targets 0.6554 0.6553 0.6563 0.6562 0.6562 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 8 4 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 1 2 3 4 5 targets 0.6563 0.6445 0.6413 0.6407 0.6398 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 1 2 3 4 targets 0.6070 0.6168 0.6463 0.6563 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 2 3 targets 0.6466 0.6563 0.6454 improving parameter /Constant/ass_start curently set to 1 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 1 2 3 targets 0.6563 0.6500 0.6505 improving parameter /Constant/ass_end curently set to 1 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 1 2 3 4 targets 0.6497 0.6563 0.6562 0.6471 0.6320 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 8 1 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 13 25 37 50 targets 0.5768 0.6449 0.6475 0.6491 0.6468 improving parameter /IntronModel/d curently set to 737 100-950 /IntronModel/d: checking values 100 312 525 737 950 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 4 1 8 3 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 100 312 525 737 950 targets 0.6499 0.6523 0.6527 0.6563 0.6546 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0 1 2 3 targets 0.6414 0.6563 0.6528 0.6444 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 4 targets 0.6484 0.6563 0.6490 0.6517 0.6510 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 1 2 3 targets 0.6457 0.6563 0.6516 0.6426 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 1 2 3 targets 0.6500 0.6563 0.6531 0.6556 improving parameter /Constant/trans_init_window curently set to 20 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8771, 0.8381, 0.6289, 0.6740, 0.1873, 0.1736, -1.00, -1.00, optimal target: 0.6565 changing /Constant/trans_init_window to 12 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 12 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8795, 0.8364, 0.6332, 0.6721, 0.1911, 0.1737, -1.00, -1.00, optimal target: 0.6575 changing /Constant/trans_init_window to 18 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 9 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 6 12 18 25 targets 0.6476 0.6557 0.6565 0.6575 0.6484 /Constant/trans_init_window: checking values 12 15 18 21 24 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 values 12 15 18 21 24 targets 0.6565 0.6550 0.6575 0.6554 0.6539 improving parameter /Constant/init_coding_len curently set to 9 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 bucket ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 found improvement: 0.8825, 0.8351, 0.6321, 0.6691, 0.1986, 0.1765, -1.00, -1.00, optimal target: 0.6580 changing /Constant/init_coding_len to 0 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 2.1875 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 4 9 13 18 targets 0.6580 0.6546 0.6575 0.6534 0.6529 /Constant/init_coding_len: checking values 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 1 2 3 4 targets 0.6566 0.6577 0.6558 0.6546 improving parameter /ExonModel/patpseudocount curently set to 2.1875 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8830, 0.8347, 0.6340, 0.6696, 0.2095, 0.1873, -1.00, -1.00, optimal target: 0.6606 changing /ExonModel/patpseudocount to 1.625 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 5 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.5 1.625 2.75 3.875 5 targets 0.6566 0.6606 0.6568 0.6551 0.6523 /ExonModel/patpseudocount: checking values 0.5 1.0625 1.625 2.1875 2.75 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 1.0625 1.625 2.1875 2.75 targets 0.6566 0.6606 0.6606 0.6580 0.6568 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 2 5 7 10 targets 0.6606 0.6606 0.6606 0.6606 0.6606 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0 1 2 3 targets 0.6606 0.6606 0.6606 0.6606 improving parameter /Constant/intterm_coding_len curently set to 5 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8851, 0.8365, 0.6340, 0.6673, 0.2133, 0.1895, -1.00, -1.00, optimal target: 0.6613 changing /Constant/intterm_coding_len to 3 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.325 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 0 3 6 9 13 targets 0.6585 0.6613 0.6544 0.6595 0.6541 /Constant/intterm_coding_len: checking values 1 2 3 4 6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 1 2 3 4 6 targets 0.6583 0.6603 0.6613 0.6603 0.6544 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.325 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 8 1 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 found improvement: 0.8852, 0.8381, 0.6346, 0.6695, 0.2134, 0.1903, -1.00, -1.00, optimal target: 0.6622 changing /ExonModel/slope_of_bandwidth to 0.4625 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 10 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6612 0.6612 0.6613 0.6622 0.6616 /ExonModel/slope_of_bandwidth: checking values 0.325 0.39375 0.4625 0.53125 0.6 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation values 0.325 0.39375 0.4625 0.53125 0.6 targets 0.6613 0.6605 0.6622 0.6617 0.6616 improving parameter /ExonModel/minwindowcount curently set to 10 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8854, 0.8369, 0.6340, 0.6686, 0.2170, 0.1928, -1.00, -1.00, optimal target: 0.6624 changing /ExonModel/minwindowcount to 15 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 15 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... values 1 4 8 11 15 targets 0.6583 0.6602 0.6606 0.6622 0.6624 /ExonModel/minwindowcount: checking values 12 13 14 15 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8850, 0.8374, 0.6345, 0.6699, 0.2170, 0.1931, -1.00, -1.00, optimal target: 0.6628 changing /ExonModel/minwindowcount to 13 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.01 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 12 13 14 15 targets 0.6620 0.6628 0.6627 0.6624 /ExonModel/minwindowcount: checking values 13 retrieve accuracy from previous computation values 13 targets 0.6628 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.5 2.125 3.75 5.375 7 targets 0.6628 0.6628 0.6628 0.6628 0.6628 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6611 0.6613 0.6618 0.6627 0.6628 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6600 0.6622 0.6625 0.6628 0.6627 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 1 2 4 6 8 targets 0.6628 0.6628 0.6628 0.6628 0.6628 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6628 0.6628 0.6628 0.6628 0.6628 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6628 0.6611 0.6600 0.6566 0.6543 improving parameter /IntronModel/dssneighborfactor curently set to 0.01 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 found improvement: 0.8842, 0.8395, 0.6338, 0.6704, 0.2206, 0.1969, -1.00, -1.00, optimal target: 0.6637 changing /IntronModel/dssneighborfactor to 0.00505 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.2 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6492 0.6627 0.6637 0.6624 0.6628 /IntronModel/dssneighborfactor: checking values 0.002575 0.0038125 0.00505 0.0062875 0.007525 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation values 0.002575 0.0038125 0.00505 0.0062875 0.007525 targets 0.6627 0.6637 0.6637 0.6632 0.6624 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 100 225 350 475 600 targets 0.6560 0.6596 0.6557 0.6580 0.6592 improving parameter /Constant/probNinCoding curently set to 0.2 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8870, 0.8372, 0.6349, 0.6699, 0.2206, 0.1970, -1.00, -1.00, optimal target: 0.6639 changing /Constant/probNinCoding to 0.25 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 5.0 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.25 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... values 0.15 0.175 0.2 0.225 0.25 targets 0.6628 0.6628 0.6637 0.6635 0.6639 /Constant/probNinCoding: checking values 0.225 0.23125 0.2375 0.24375 0.25 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation values 0.225 0.23125 0.2375 0.24375 0.25 targets 0.6635 0.6635 0.6635 0.6631 0.6639 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 1 2 3 4 5 targets 0.6639 0.6507 0.6512 0.6496 0.6504 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation values 1 2 3 4 targets 0.6187 0.6196 0.6546 0.6639 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 2 3 targets 0.6486 0.6639 0.6550 improving parameter /Constant/ass_start curently set to 1 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 2 3 targets 0.6639 0.6577 0.6548 improving parameter /Constant/ass_end curently set to 1 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 4 targets 0.6546 0.6639 0.6603 0.6508 0.6376 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 13 25 37 50 targets 0.5785 0.6519 0.6587 0.6543 0.6524 improving parameter /IntronModel/d curently set to 737 100-950 /IntronModel/d: checking values 100 312 525 737 950 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 8 4 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 100 312 525 737 950 targets 0.6608 0.6618 0.6628 0.6639 0.6617 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 1 2 3 targets 0.6377 0.6639 0.6567 0.6470 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 0 1 2 3 4 targets 0.6579 0.6639 0.6585 0.6587 0.6589 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 targets 0.6526 0.6639 0.6546 0.6510 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 targets 0.6592 0.6639 0.6584 0.6631 improving parameter /Constant/trans_init_window curently set to 18 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 values 0 6 12 18 25 targets 0.6541 0.6556 0.6576 0.6639 0.6567 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 4 9 13 18 targets 0.6639 0.6572 0.6596 0.6525 0.6522 improving parameter /ExonModel/patpseudocount curently set to 1.625 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.5 1.625 2.75 3.875 5 targets 0.6623 0.6639 0.6590 0.6562 0.6558 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 2 5 7 10 targets 0.6639 0.6639 0.6639 0.6639 0.6639 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 values 0 1 2 3 targets 0.6639 0.6639 0.6639 0.6639 improving parameter /Constant/intterm_coding_len curently set to 3 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 0 3 6 9 13 targets 0.6599 0.6639 0.6575 0.6557 0.6552 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.4625 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6631 0.6627 0.6637 0.6639 0.6622 improving parameter /ExonModel/minwindowcount curently set to 13 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 1 4 8 11 15 targets 0.6606 0.6624 0.6626 0.6627 0.6635 improving parameter /IGenicModel/patpseudocount curently set to 5.0 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 found improvement: 0.8871, 0.8372, 0.6354, 0.6700, 0.2241, 0.2000, -1.00, -1.00, optimal target: 0.6647 changing /IGenicModel/patpseudocount to 7 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 7 /IntronModel/patpseudocount 7 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.25 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... values 0.5 2.125 3.75 5.375 7 targets 0.6639 0.6639 0.6639 0.6639 0.6647 /IGenicModel/patpseudocount: checking values 5.375 5.78125 6.1875 6.59375 7 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 5.375 5.78125 6.1875 6.59375 7 targets 0.6639 0.6647 0.6647 0.6647 0.6647 improving parameter /IntronModel/patpseudocount curently set to 7 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 found improvement: 0.8881, 0.8371, 0.6359, 0.6703, 0.2241, 0.2000, -1.00, -1.00, optimal target: 0.6650 changing /IntronModel/patpseudocount to 3.75 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 7 /IntronModel/patpseudocount 3.75 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.25 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6645 0.6643 0.6650 0.6647 0.6647 /IntronModel/patpseudocount: checking values 2.125 2.9375 3.75 4.5625 5.375 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 found improvement: 0.8881, 0.8376, 0.6359, 0.6705, 0.2241, 0.2000, -1.00, -1.00, optimal target: 0.6651 changing /IntronModel/patpseudocount to 4.5625 /Constant/dss_end 4 /Constant/dss_start 2 /Constant/ass_start 1 /Constant/ass_end 1 /Constant/ass_upwindow_size 30 /IntronModel/d 737 /IntronModel/ass_motif_memory 1 /IntronModel/ass_motif_radius 1 /ExonModel/tis_motif_memory 1 /ExonModel/tis_motif_radius 1 /Constant/trans_init_window 18 /Constant/init_coding_len 0 /ExonModel/patpseudocount 1.625 /ExonModel/etpseudocount 3 /ExonModel/etorder 2 /Constant/intterm_coding_len 3 /ExonModel/slope_of_bandwidth 0.4625 /ExonModel/minwindowcount 13 /IGenicModel/patpseudocount 7 /IntronModel/patpseudocount 4.5625 /IntronModel/slope_of_bandwidth 0.25625 /IntronModel/minwindowcount 4 /IntronModel/asspseudocount 0.00266 /IntronModel/dsspseudocount 0.0005 /IntronModel/dssneighborfactor 0.00505 /ExonModel/minPatSum 233.3 /Constant/probNinCoding 0.25 /Constant/decomp_num_steps 1 Writing new parameters to /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_parameters.cfg... retrieve accuracy from previous computation values 2.125 2.9375 3.75 4.5625 5.375 targets 0.6643 0.6650 0.6650 0.6651 0.6647 /IntronModel/patpseudocount: checking values 3.75 4.15625 4.5625 4.96875 5.375 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 retrieve accuracy from previous computation values 3.75 4.15625 4.5625 4.96875 5.375 targets 0.6650 0.6651 0.6651 0.6648 0.6647 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6610 0.6617 0.6645 0.6628 0.6625 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 1 2 4 6 8 targets 0.6651 0.6651 0.6651 0.6648 0.6647 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6651 0.6651 0.6651 0.6651 0.6651 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6650 0.6617 0.6570 0.6561 0.6543 improving parameter /IntronModel/dssneighborfactor curently set to 0.00505 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6500 0.6610 0.6651 0.6627 0.6622 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 100 225 350 475 600 targets 0.6566 0.6612 0.6564 0.6577 0.6603 improving parameter /Constant/probNinCoding curently set to 0.25 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation values 0.15 0.175 0.2 0.225 0.25 targets 0.6638 0.6638 0.6648 0.6646 0.6651 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 1 2 3 4 5 targets 0.6651 0.6505 0.6508 0.6496 0.6500 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation values 1 2 3 4 targets 0.6178 0.6199 0.6542 0.6651 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 8 4 5 values 1 2 3 targets 0.6511 0.6651 0.6549 improving parameter /Constant/ass_start curently set to 1 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 1 2 3 targets 0.6651 0.6586 0.6554 improving parameter /Constant/ass_end curently set to 1 0-4 /Constant/ass_end: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 0 1 2 3 4 targets 0.6546 0.6651 0.6599 0.6500 0.6374 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 bucket ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 1 13 25 37 50 targets 0.5792 0.6526 0.6582 0.6551 0.6520 improving parameter /IntronModel/d curently set to 737 100-950 /IntronModel/d: checking values 100 312 525 737 950 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 100 312 525 737 950 targets 0.6608 0.6627 0.6625 0.6651 0.6618 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 0 1 2 3 targets 0.6387 0.6651 0.6568 0.6477 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 4 targets 0.6581 0.6651 0.6605 0.6594 0.6593 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 8 4 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 targets 0.6531 0.6651 0.6550 0.6515 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 values 0 1 2 3 targets 0.6595 0.6651 0.6585 0.6636 improving parameter /Constant/trans_init_window curently set to 18 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0 6 12 18 25 targets 0.6556 0.6560 0.6592 0.6651 0.6567 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 4 9 13 18 targets 0.6651 0.6572 0.6594 0.6525 0.6513 improving parameter /ExonModel/patpseudocount curently set to 1.625 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 0.5 1.625 2.75 3.875 5 targets 0.6622 0.6651 0.6600 0.6558 0.6542 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 2 5 7 10 targets 0.6651 0.6651 0.6651 0.6651 0.6651 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 1 2 3 targets 0.6651 0.6651 0.6651 0.6651 improving parameter /Constant/intterm_coding_len curently set to 3 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 values 0 3 6 9 13 targets 0.6611 0.6651 0.6560 0.6555 0.6542 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.4625 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 retrieve accuracy from previous computation bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6633 0.6635 0.6636 0.6651 0.6612 improving parameter /ExonModel/minwindowcount curently set to 13 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codonExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: ExonModel::processInternalExon: in-frame stop codonin-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 1 4 8 5 values 1 4 8 11 15 targets 0.6594 0.6614 0.6626 0.6624 0.6636 improving parameter /IGenicModel/patpseudocount curently set to 7 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 1 4 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 1 8 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 7 3 4 8 1 5 bucket ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon ExonModel::processInternalExon: in-frame stop codon 6 2 3 7 4 1 8 5 retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6643 0.6643 0.6643 0.6643 0.6651 improving parameter /IntronModel/patpseudocount curently set to 4.5625 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6645 0.6643 0.6650 0.6647 0.6647 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6610 0.6617 0.6645 0.6628 0.6625 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 4 6 8 targets 0.6651 0.6651 0.6651 0.6648 0.6647 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6651 0.6651 0.6651 0.6651 0.6651 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6650 0.6617 0.6570 0.6561 0.6543 improving parameter /IntronModel/dssneighborfactor curently set to 0.00505 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6500 0.6610 0.6651 0.6627 0.6622 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 225 350 475 600 targets 0.6566 0.6612 0.6564 0.6577 0.6603 improving parameter /Constant/probNinCoding curently set to 0.25 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.15 0.175 0.2 0.225 0.25 targets 0.6638 0.6638 0.6648 0.6646 0.6651 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 5 targets 0.6651 0.6505 0.6508 0.6496 0.6500 improving parameter /Constant/dss_end curently set to 4 1-4 /Constant/dss_end: checking values 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 targets 0.6178 0.6199 0.6542 0.6651 improving parameter /Constant/dss_start curently set to 2 1-3 /Constant/dss_start: checking values 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 targets 0.6511 0.6651 0.6549 improving parameter /Constant/ass_start curently set to 1 1-3 /Constant/ass_start: checking values 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 targets 0.6651 0.6586 0.6554 improving parameter /Constant/ass_end curently set to 1 0-4 /Constant/ass_end: checking values 0 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 4 targets 0.6546 0.6651 0.6599 0.6500 0.6374 improving parameter /Constant/ass_upwindow_size curently set to 30 1-50 /Constant/ass_upwindow_size: checking values 1 13 25 37 50 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 13 25 37 50 targets 0.5792 0.6526 0.6582 0.6551 0.6520 improving parameter /IntronModel/d curently set to 737 100-950 /IntronModel/d: checking values 100 312 525 737 950 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 312 525 737 950 targets 0.6608 0.6627 0.6625 0.6651 0.6618 improving parameter /IntronModel/ass_motif_memory curently set to 1 0-3 /IntronModel/ass_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6387 0.6651 0.6568 0.6477 improving parameter /IntronModel/ass_motif_radius curently set to 1 0-4 /IntronModel/ass_motif_radius: checking values 0 1 2 3 4 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 4 targets 0.6581 0.6651 0.6605 0.6594 0.6593 improving parameter /ExonModel/tis_motif_memory curently set to 1 0-3 /ExonModel/tis_motif_memory: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6531 0.6651 0.6550 0.6515 improving parameter /ExonModel/tis_motif_radius curently set to 1 0-3 /ExonModel/tis_motif_radius: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6595 0.6651 0.6585 0.6636 improving parameter /Constant/trans_init_window curently set to 18 0-25 /Constant/trans_init_window: checking values 0 6 12 18 25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 6 12 18 25 targets 0.6556 0.6560 0.6592 0.6651 0.6567 improving parameter /Constant/init_coding_len curently set to 0 0-18 /Constant/init_coding_len: checking values 0 4 9 13 18 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 4 9 13 18 targets 0.6651 0.6572 0.6594 0.6525 0.6513 improving parameter /ExonModel/patpseudocount curently set to 1.625 0.5-5 /ExonModel/patpseudocount: checking values 0.5 1.625 2.75 3.875 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 1.625 2.75 3.875 5 targets 0.6622 0.6651 0.6600 0.6558 0.6542 improving parameter /ExonModel/etpseudocount curently set to 3 0-10 /ExonModel/etpseudocount: checking values 0 2 5 7 10 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 2 5 7 10 targets 0.6651 0.6651 0.6651 0.6651 0.6651 improving parameter /ExonModel/etorder curently set to 2 0-3 /ExonModel/etorder: checking values 0 1 2 3 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 1 2 3 targets 0.6651 0.6651 0.6651 0.6651 improving parameter /Constant/intterm_coding_len curently set to 3 0-13 /Constant/intterm_coding_len: checking values 0 3 6 9 13 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0 3 6 9 13 targets 0.6611 0.6651 0.6560 0.6555 0.6542 improving parameter /ExonModel/slope_of_bandwidth curently set to 0.4625 0.05-0.6 /ExonModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6633 0.6635 0.6636 0.6651 0.6612 improving parameter /ExonModel/minwindowcount curently set to 13 1-15 /ExonModel/minwindowcount: checking values 1 4 8 11 15 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 4 8 11 15 targets 0.6594 0.6614 0.6626 0.6624 0.6636 improving parameter /IGenicModel/patpseudocount curently set to 7 0.5-7 /IGenicModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6643 0.6643 0.6643 0.6643 0.6651 improving parameter /IntronModel/patpseudocount curently set to 4.5625 0.5-7 /IntronModel/patpseudocount: checking values 0.5 2.125 3.75 5.375 7 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.5 2.125 3.75 5.375 7 targets 0.6645 0.6643 0.6650 0.6647 0.6647 improving parameter /IntronModel/slope_of_bandwidth curently set to 0.25625 0.05-0.6 /IntronModel/slope_of_bandwidth: checking values 0.05 0.1875 0.325 0.4625 0.6 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.05 0.1875 0.325 0.4625 0.6 targets 0.6610 0.6617 0.6645 0.6628 0.6625 improving parameter /IntronModel/minwindowcount curently set to 4 1-8 /IntronModel/minwindowcount: checking values 1 2 4 6 8 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 4 6 8 targets 0.6651 0.6651 0.6651 0.6648 0.6647 improving parameter /IntronModel/asspseudocount curently set to 0.00266 0.0005-0.03 /IntronModel/asspseudocount: checking values 0.0005 0.007875 0.01525 0.022625 0.03 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0005 0.007875 0.01525 0.022625 0.03 targets 0.6651 0.6651 0.6651 0.6651 0.6651 improving parameter /IntronModel/dsspseudocount curently set to 0.0005 0.0002-0.04 /IntronModel/dsspseudocount: checking values 0.0002 0.01015 0.0201 0.03005 0.04 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0002 0.01015 0.0201 0.03005 0.04 targets 0.6650 0.6617 0.6570 0.6561 0.6543 improving parameter /IntronModel/dssneighborfactor curently set to 0.00505 0.0001-0.01 /IntronModel/dssneighborfactor: checking values 0.0001 0.002575 0.00505 0.007525 0.01 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.0001 0.002575 0.00505 0.007525 0.01 targets 0.6500 0.6610 0.6651 0.6627 0.6622 improving parameter /ExonModel/minPatSum curently set to 233.3 100-600 /ExonModel/minPatSum: checking values 100 225 350 475 600 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 100 225 350 475 600 targets 0.6566 0.6612 0.6564 0.6577 0.6603 improving parameter /Constant/probNinCoding curently set to 0.25 0.15-.25 /Constant/probNinCoding: checking values 0.15 0.175 0.2 0.225 0.25 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 0.15 0.175 0.2 0.225 0.25 targets 0.6638 0.6638 0.6648 0.6646 0.6651 improving parameter /Constant/decomp_num_steps curently set to 1 1-5 /Constant/decomp_num_steps: checking values 1 2 3 4 5 retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation retrieve accuracy from previous computation values 1 2 3 4 5 targets 0.6651 0.6505 0.6508 0.6496 0.6500 Making final training with the optimized parameters. etraining --species=BUSCO_Olurida_maker_busco_4077874286 --AUGUSTUS_CONFIG_PATH=/gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/ --/augustus/verbosity=0 --/ExonModel/verbosity=0 --/IGenicModel/verbosity=0 --/IntronModel/verbosity=0 --/UtrModel/verbosity=0 --/genbank/verbosity=0 tmp_opt_BUSCO_Olurida_maker_busco_4077874286/curtrain ExonModel::processInternalExon: in-frame stop codon # Read in 272 genbank sequences. Quantiles of the GC contents in the training set: 0% 0.322 5% 0.335 10% 0.34 15% 0.344 20% 0.347 25% 0.349 30% 0.35 35% 0.352 40% 0.353 45% 0.355 50% 0.356 55% 0.359 60% 0.361 65% 0.364 70% 0.365 75% 0.367 80% 0.371 85% 0.374 90% 0.381 95% 0.392 100% 0.447 HMM-training the parameters... i= 0 bc= (0.237, 0.263, 0.263, 0.237) ** building model for exons *EXON* gene g1.t1 transcr. 1 in sequence Contig32884:3029-5979_1-2950: Single exon gene does not begin with start codon but with ata gene g1.t1 transcr. 1 in sequence Contig24838:4946-14128_1-9153: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig322:112-5530_698-3887: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig83031:0-9706_1-9706: Initial exon does not begin with start codon but with tat gene g1.t1 transcr. 1 in sequence Contig38375:1010-6334_1-5324: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig59170:82-7270_1-5280: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig1475:18420-21215_1-2795: Initial exon does not begin with start codon but with att gene g1.t1 transcr. 1 in sequence Contig22929:0-7139_1-7119: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig49244:512-5439_603-4570: Initial exon does not begin with start codon but with gct gene g1.t1 transcr. 1 in sequence Contig62671:10969-16013_1-5044: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig56075:6839-14163_1-7324: Initial exon does not begin with start codon but with agt gene g1.t1 transcr. 1 in sequence Contig2444:5176-12566_550-7228: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig58282:0-10523_1-4515: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig36016:4303-20350_337-16047: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig1932:15980-27012_2618-11032: Initial exon does not begin with start codon but with act gene g1.t1 transcr. 1 in sequence Contig40278:16479-20889_1-4410: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig34055:20746-30730_1-9504: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig177657:176-3744_1-3568: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig26022:8217-28201_5931-15578: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig44020:3956-20091_2512-10132: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig28446:14981-29329_61-14088: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig22263:25833-31517_1-5028: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig1273:11214-26186_8864-14960: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig50181:18283-26420_1-8137: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: Initial exon does not begin with start codon but with gca ExonModel::processInternalExon: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig107785:2501-26873_1-24372: Terminal exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig15298:0-9604_1-5408: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig15330:0-6544_604-4897: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig67312:620-3369_42-2716: Single exon doesn't end in stop codon. Variable stopCodonExcludedFromCDS set right? gene g1.t1 transcr. 1 in sequence Contig19930:1124-10962_1081-8567: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29639:10004-20612_1-10280: Initial exon does not begin with start codon but with ggt gene g1.t1 transcr. 1 in sequence Contig4753:0-11762_229-6970: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig37911:1839-10052_69-6407: Initial exon does not begin with start codon but with cgt gene g1.t1 transcr. 1 in sequence Contig29670:400-20794_4564-20392: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig28490:8352-12514_1-3710: Initial exon does not begin with start codon but with cat gene g1.t1 transcr. 1 in sequence Contig37588:33560-39450_16-5860: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig29580:579-15343_2-13442: Initial exon does not begin with start codon but with gta gene g1.t1 transcr. 1 in sequence Contig2341:256-11694_333-11438: Initial exon does not begin with start codon but with acg gene g1.t1 transcr. 1 in sequence Contig46760:2974-7557_9-4583: Initial exon does not begin with start codon but with gaa gene g1.t1 transcr. 1 in sequence Contig26838:3984-16267_1-11974: Initial exon does not begin with start codon but with cct gene g1.t1 transcr. 1 in sequence Contig32086:33156-42493_1-9293: Initial exon does not begin with start codon but with ggc gene g1.t1 transcr. 1 in sequence Contig32086:33156-42493_1-9293: in-frame stop codon gene g1.t1 transcr. 1 in sequence Contig47514:0-7551_1-7551: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig25952:9109-16825_4-7716: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig54624:0-19276_6441-18303: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig107429:1628-7977_1-5951: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig21559:0-8884_1-8884: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig42247:5153-23721_1335-13762: Initial exon does not begin with start codon but with tgt gene g1.t1 transcr. 1 in sequence Contig99370:0-2016_1-2016: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig22581:0-9711_1-9703: coding length not a multiple of 3. Skipping... gene g1.t1 transcr. 1 in sequence Contig60517:0-4334_1-4334: Initial exon does not begin with start codon but with ggt gene g1.t1 transcr. 1 in sequence Contig43141:3162-6322_1-3160: coding length not a multiple of 3. Skipping... start codon frequencies: ATG(225) # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) number of bases in the reading frames: 72774 72747 72967 --- frame = 0 --- minPatSum = 233 --- frame = 1 --- minPatSum = 233 --- frame = 2 --- minPatSum = 233 --- initial frame = 0 --- minPatSum = 233 --- initial frame = 1 --- minPatSum = 233 --- initial frame = 2 --- minPatSum = 233 --- internal exon terminal frame = 0 --- minPatSum = 233 --- internal exon terminal frame = 1 --- minPatSum = 233 --- internal exon terminal frame = 2 --- minPatSum = 233 single, initial, internal, terminal mean exon lengths : 1014 135 115 202 single exon : 22 initial exon 0 : 82 initial exon 1 : 67 initial exon 2 : 53 internal exon 0 : 507 internal exon 1 : 315 internal exon 2 : 286 terminal exon : 214 Frequency of stop codons: tag: 60 (0.254) taa: 68 (0.288) tga: 108 (0.458) end *EXON* Storing parameters to file... Writing exon model parameters [1] to file /gscratch/scrubbed/samwhite/outputs/20190115_oly_busco_metazoa_augustus/augustus/config/species/BUSCO_Olurida_maker_busco_4077874286/BUSCO_Olurida_maker_busco_4077874286_exon_probs.pbl. Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. examining piece 1..3974 (3974 bp) viterbi algorithm progress: [%]: .Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. examining piece 1..3051 (3051 bp) viterbi algorithm progress: [%]: Warning: Block unknown_I is not significant enough, removed from profile. .Warning: Block unknown_A is not significant enough, removed from profile. .examining piece 1..6064 (6064 bp) examining piece 1..2974 (2974 bp) viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: examining piece 1..2085 (2085 bp) .Warning: Block unknown_E is not significant enough, removed from profile. viterbi algorithm progress: [%]: Warning: Block unknown_G is not significant enough, removed from profile. .Warning: Block unknown_I is not significant enough, removed from profile. .examining piece 1..3657 (3657 bp) .examining piece 1..4875 (4875 bp) viterbi algorithm progress: [%]: ..examining piece 1..7961 (7961 bp) ..Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_C is not significant enough, removed from profile. .viterbi algorithm progress: [%]: .viterbi algorithm progress: [%]: .examining piece 1..4505 (4505 bp) ...viterbi algorithm progress: [%]: .Warning: Block unknown_B is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. .10examining piece 1..4221 (4221 bp) ...viterbi algorithm progress: [%]: .examining piece 1..2989 (2989 bp) ..examining piece 1..3709 (3709 bp) .viterbi algorithm progress: [%]: .......viterbi algorithm progress: [%]: ..examining piece 3104..9251 (6148 bp) .examining piece 1..3607 (3607 bp) ...viterbi algorithm progress: [%]: ..examining piece 1..2386 (2386 bp) viterbi algorithm progress: [%]: ....10viterbi algorithm progress: [%]: ....20examining piece 1..5113. (5113 bp) .examining piece 1..3707 (3707 bp) ......viterbi algorithm progress: [%]: .......examining piece 1..2983 (2983 bp) .examining piece 1..3222 (3222 bp) ..10.viterbi algorithm progress: [%]: ....viterbi algorithm progress: [%]: .....Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_I is not significant enough, removed from profile. Warning: Block unknown_J is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ........examining piece 1..5290 (5290 bp) Warning: Block unknown_W is not significant enough, removed from profile. Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .....Warning: Block unknown_F is not significant enough, removed from profile. .....Warning: Block unknown_J is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: ...10.30.......examining piece 1..104946 (4946 bp) 10........Warning: Block unknown_G is not significant enough, removed from profile. ........10.............Warning: Block unknown_K is not significant enough, removed from profile. ...20.......examining piece 1..6176 (6176 bp) .....40..viterbi algorithm progress: [%]: 10.....viterbi algorithm progress: [%]: .......examining piece 1..9565 (9565 bp) ...10...Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ...20...Warning: Block unknown_L is not significant enough, removed from profile. ....examining piece 1..3717 (3717 bp) ...viterbi algorithm progress: [%]: examining piece 1..6406 (6406 bp) .....20..Warning: Block unknown_F is not significant enough, removed from profile. .Warning: Block unknown_R is not significant enough, removed from profile. ...examining piece 96..6269 (6174 bp) ..Warning: Block unknown_Y is not significant enough, removed from profile. ..viterbi algorithm progress: [%]: .....Warning: Block viterbi algorithm progress: [%]: ..examining piece ..unknown_L.... is not significant enough, removed from profile. examining piece 1..3081 (3081 bp) 50..10...viterbi algorithm progress: [%]: .examining piece 1..6834 (6834 bp) .....viterbi algorithm progress: [%]: .....1..2983 (2983 bp) .viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: 20.20......examining piece 1..8576 (8576 bp) ...examining piece 1..2559 (2559 bp) ....examining piece 1..2964 (2964 bp) ..viterbi algorithm progress: [%]: .20examining piece 1..2731 (2731 bp) ....viterbi algorithm progress: [%]: ....examining piece .1..3822 (3822 bp) ......viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: Warning: Block unknown_A is not significant enough, removed from profile. ...........10...10.Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: examining piece 2787..10923 (.8137 bp) .......Warning: Block unknown_F is not significant enough, removed from profile. 2010.examining piece 1..2257 (2257 bp) ....10viterbi algorithm progress: [%]: ..........viterbi algorithm progress: [%]: ............30......20........Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ...............Warning: Block unknown_L is not significant enough, removed from profile. .......10..10...........30..............30...30.1060......Warning: Block unknown_D is not significant enough, removed from profile. ...10...examining piece 1349..7962 (6614 bp) ..20..........10................20Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .viterbi algorithm progress: [%]: .....Warning: Block unknown_E is not significant enough, removed from profile. ..Warning: Block unknown_G is not significant enough, removed from profile. .40....10.Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. .20..30....Warning: Block unknown_D is not significant enough, removed from profile. ..10examining piece 1..5384 (5384 bp) .Warning: Block unknown_H is not significant enough, removed from profile. ..................30.....20..............1030......................examining piece 1..7892 (7892 bp) ......Warning: Block unknown_C is not significant enough, removed from profile. ...Warning: Block unknown_E is not significant enough, removed from profile. .....7020examining piece 40.1..viterbi algorithm progress: [%]: .......examining piece Warning: Block .1..examining piece ......unknown_O is not significant enough, removed from profile. ..examining piece 1..2185 (2185 bp) .examining piece 1..5265 (5265 bp) .examining piece examining piece .....1010examining piece .Warning: Block examining piece ...viterbi algorithm progress: [%]: ..20.......20viterbi algorithm progress: [%]: ....614...2284....unknown_M4242examining piece examining piece .. is not significant enough, removed from profile. 40...1.examining piece 401.....1011.examining piece ..examining piece 1030 (...111....201viterbi algorithm progress: [%]: ..examining piece 20....1050..........27261....6482.......10373.2284... bp)....examining piece .. (.......19435.....1286.332220561.4191.....2045..30....examining piece . (1.......7140.... (302878.2726... (... (. (.. (..18822 41914784....613220 bp)......viterbi algorithm progress: [%]: ... .. bp) (.....5450. (.....2878viterbi algorithm progress: [%]: ..20.. (........ bp)..303033221286..6482.40...2056.3974 (... bp) (5450.10 bp). ..2045 bp).. (7140... ... bp) bp)10...40 .. bp)....... ( ... .....4784... bp) bp)viterbi algorithm progress: [%]: .......397420.....viterbi algorithm progress: [%]: bp)... ....viterbi algorithm progress: [%]: bp) bp).. ....viterbi algorithm progress: [%]: ........40..viterbi algorithm progress: [%]: .10..viterbi algorithm progress: [%]: . ........ ..viterbi algorithm progress: [%]: viterbi algorithm progress: [%]: ....... ...viterbi algorithm progress: [%]: 80.. .....viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: ...viterbi algorithm progress: [%]: 20..................20...30.....10.........103040.........10.viterbi algorithm progress: [%]: ..................10..50...10....20.....50...20..............30.50.............10.30.................................................40.2030.....................30............................30..........................................10.....30...10.10.30.....6040.............20.50.......10.....50..................................60.......50...4020......................10.............................40.50..40..................40.....6020................2010..10.......40.30................10.1020............10.....90.......30.............40.....20.............20..........10....4060..40............20.1020................40...10.........60..............10..50........50.10.............50.............303030......204070...........................................20..50......2010...............10....................40...50.60..5070...20.....20............20.........60................................70...............60....................20.....30............30.......................30....20.........20...1020.100...30...............50............70....70.....30......50..........60.........50....30.........20.30..50..........................40.....80................40....60................80.60............50........30..............40.......60..60.......... ........20..........40.....30....70...........sampling algorithm progress: [%]: .50....10........70.30...60.............6030................20...40....50..90....30.......202010..............30..............20.......407040..................30.......4020..............30.....................80..........70...............50..40....50.................................70.........30.......70...........3060...80..........30......606030.........40....8050....................20...................20.......90....................................30.80........................30........40.....20.60...............70..........................9040....50.100.60...3080.........30...40...........40......60.....4050....40..........80.........70.10100.....80.............100.........50..40 ............70.70.70.......50............60...30.....40...sampling algorithm progress: [%]: . 40......70............. ......90.............................................40.................60..........sampling algorithm progress: [%]: ...........80......70.........sampling algorithm progress: [%]: ..90...........5050....................50...............50....40...............40...60............30....................20.............80.....70.40..50......60.......90.90........50.40.10010..30....40...80.80.60......70..80...70........70....60..90...50..................50...40...30....... ....50..............................60...........80..........8050.......40.60.50..............sampling algorithm progress: [%]: .....30.............50........40.....50....40........90......60.....20....................................................1010...........70.80.70.................................50.......................40...........100...60.70.........30...60...............100......70..30.5080.....80.20........80.100..............50.....90....90............... ..........40......6090... ..... 50.60.......80......507090....70....60.50..sampling algorithm progress: [%]: .............................................20..sampling algorithm progress: [%]: .......80...........20.................100.........60...........70.60......30.....sampling algorithm progress: [%]: .70..........10..40................10090.....5060........90........40...50.......................70.. .................30.......90.80.....................100.....90100.......sampling algorithm progress: [%]: .........50........70... ......60....6090...... ........80...60........sampling algorithm progress: [%]: .......90.....80.70.80.sampling algorithm progress: [%]: ..90...... ...................90.90...............40.........10.........................80........1040.................................7080...5080....10................60.........40.....100....60.......60..10.10080.......sampling algorithm progress: [%]: ...........100100...40..60..........6010090.................90............60..502050...100 ................................. ............50....70...... . 100.60.....100. ...10020....60........... ..10..90.......80sampling algorithm progress: [%]: ...70....... ......5060..................20..............9050...sampling algorithm progress: [%]: ...... .....70100.....................sampling algorithm progress: [%]: 20...............sampling algorithm progress: [%]: ..90..sampling algorithm progress: [%]: .........50........... .....60..100.........70.....10...70.30....10...sampling algorithm progress: [%]: 80.10.......90...sampling algorithm progress: [%]: ..............sampling algorithm progress: [%]: ....20..............80..60.....60......................90......sampling algorithm progress: [%]: ........60..... .............70........70.....80...........sampling algorithm progress: [%]: ...............sampling algorithm progress: [%]: ....50.......70................30.....70.1010020...20............10.................................80...................80.......100....70....70100103010...................70.....20.40..........70................80....20.. . .........................70...sampling algorithm progress: [%]: ... 90...70..80.20...70...60.......10............90...................30sampling algorithm progress: [%]: ...30......................100........80...70...sampling algorithm progress: [%]: .............3030.....................30....10.........30.30....40 ........................100..80......sampling algorithm progress: [%]: ..........20...........................10......10......80.......20........... 100..6010.......5040.9040......70...........70.........60..sampling algorithm progress: [%]: 30.. ......................................80.90.........sampling algorithm progress: [%]: .........8090...90..601090.........40.........10........40..........8090....20.............70....10080.......................10..90.40........10.30.........................80.........40.........10.....................3020.....70...20 ..........80.80................100.50...100. ...... ............50.....50........20......50......90......80...90.........20.....................40..80...50........40...............sampling algorithm progress: [%]: 60......................................................examining piece .6090...........10..100...10......1906........90...30......20........60509027.....100..20............ (......examining piece .30...4020......7122..100. .....20.80......10090.............. bp)...................70.............80 ..........6060.. ...201... ......100.....viterbi algorithm progress: [%]: ...50... ...90.....3289 (3289 bp) .........sampling algorithm progress: [%]: .60......50.....70..viterbi algorithm progress: [%]: ...10.......100..........30....30............80.100..................................70.......30.............20..........70.......70....90....70.....3040......50...60..50.......examining piece 1..2161 (2161 bp) .40...viterbi algorithm progress: [%]: ....... ...40100....20.............70....70.Warning: Block sampling algorithm progress: [%]: ....9080...unknown_A20..80.....90....sampling algorithm progress: [%]: ........ 90.....................70. is not significant enough, removed from profile. ......60.100................90..........90. ....10... .examining piece .......10020100..................sampling algorithm progress: [%]: .60.403......30.....80.30..10...40..............40................... ...40...5708....30.................50........ .......10.. ...............sampling algorithm progress: [%]: ...............sampling algorithm progress: [%]: 100..5060..80.30..90.30..................50......... (.....100....80.30...70..40..................30..........sampling algorithm progress: [%]: .10....530680.80..............sampling algorithm progress: [%]: ... ..............sampling algorithm progress: [%]: ........80....... bp)..... 60..10...80... .90...........viterbi algorithm progress: [%]: 30............................90..40...40...20..........80..............20.............90.....10.......................100100...20................40.....60100.............1090.40...70.....70..90...60...........50............................9050..100.90...........70....................40..sampling algorithm progress: [%]: ..................... .. 100......8080.sampling algorithm progress: [%]: ...........90... ...........70...100..10........90....100...40.... .....40...........100..20... ..60.....100.3020.30...10.......50.....101050. .............40.......80.50............... ..90..80. .....40..................60...... ..sampling algorithm progress: [%]: ...........................100....... .....60sampling algorithm progress: [%]: ....30.100........70...............20....Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. .....10..50...............sampling algorithm progress: [%]: ...Warning: Block unknown_A is not significant enough, removed from profile. ......90Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ..604010....80. .......................examining piece .....20..50.....sampling algorithm progress: [%]: .........100........100........60...examining piece ..90...30sampling algorithm progress: [%]: .sampling algorithm progress: [%]: .... ... ..........1.....1...................sampling algorithm progress: [%]: ..70.4010...sampling algorithm progress: [%]: ..50........2155.. (........20...25722155.........Warning: Block .. bp)70....80........ (50. ...20..100.unknown_B.20.........4050.....viterbi algorithm progress: [%]: ...70....100.... 50.... .......50.80.....2572. bp) ............... is not significant enough, removed from profile. ......Warning: Block ..unknown_E5060.30.............60.............viterbi algorithm progress: [%]: 20.........100............. is not significant enough, removed from profile. 10Warning: Block unknown_DWarning: Block ..70..........70...examining piece ... is not significant enough, removed from profile. 9060...1...2173 (2173 bp) 10.30.viterbi algorithm progress: [%]: ..............90unknown_F90....... is not significant enough, removed from profile. .....Warning: Block ..10.Warning: Block ....................10...unknown_B.10...........unknown_N........examining piece ......... is not significant enough, removed from profile. .40................................30..Warning: Block ...90.30. is not significant enough, removed from profile. 100...........70......100........60 ..........1unknown_H...... is not significant enough, removed from profile. ..Warning: Block ........40. ...............unknown_O...20. is not significant enough, removed from profile. ..60.Warning: Block unknown_S is not significant enough, removed from profile. .Warning: Block unknown_T is not significant enough, removed from profile. 80.....102821 (2821 bp) 80..............................60.. 20.viterbi algorithm progress: [%]: ....10.60..80......70....10....examining piece ...80.90.............90....60........1...80..30.30..50..70......10..examining piece 90...........sampling algorithm progress: [%]: .40.2476..examining piece ........1...............10......................60..20........30.3505..50....100....10..............1008673...20......7056 (examining piece . (..90......4010......1678 (.sampling algorithm progress: [%]: .....20..............70100.....7056..20...... 106198...3505....... bp).......9953 50.20 (.. bp)............. bp)......20..80. .40 .70 50.viterbi algorithm progress: [%]: ....................viterbi algorithm progress: [%]: ....... .......100.....90...70.8276............................viterbi algorithm progress: [%]: ....100....... bp).......Warning: Block . ...70......... ..30...................90. ...90........100.... .......20..........20.......unknown_F...viterbi algorithm progress: [%]: ..........90.50..70...2080.....examining piece .20......20100..8040.......................60...2991....30.80.... is not significant enough, removed from profile. ... ...103050......70...examining piece sampling algorithm progress: [%]: ........308515..............10040...1..2983 (2983 bp) .....viterbi algorithm progress: [%]: ... ....Warning: Block .90.....Warning: Block ..........20.......40. (sampling algorithm progress: [%]: ...unknown_A.........................30............705525 bp) ..........100.viterbi algorithm progress: [%]: ...30.....60........ ..unknown_H....20......10100.80...50.60....20100...examining piece 1..7564 (7564 bp) .............. .......viterbi algorithm progress: [%]: ..........90..............100.....8030... ............90....70....100.80.... is not significant enough, removed from profile. .....Warning: Block 30......40 .50...........10.........10060.unknown_K ..............1010............ is not significant enough, removed from profile. .100.60 is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. 10... ......................50............60.30.....70..examining piece ..1...........30.......examining piece Warning: Block .Warning: Block .301................unknown_B..80...10........30..4915 is not significant enough, removed from profile. ......5805...80....examining piece unknown_Csampling algorithm progress: [%]: (1 ...90......Warning: Block (...30.Warning: Block ..40 is not significant enough, removed from profile. 4915.... bp) .Warning: Block unknown_E is not significant enough, removed from profile. Warning: Block unknown_F is not significant enough, removed from profile. ..40......Warning: Block unknown_I is not significant enough, removed from profile. 80.viterbi algorithm progress: [%]: .....10.........unknown_K..unknown_I......60........ is not significant enough, removed from profile. 5555.5805.70...... bp)....examining piece ..Warning: Block ..40..1...30....... is not significant enough, removed from profile. ........ .30..80.. (......examining piece ....viterbi algorithm progress: [%]: .....Warning: Block unknown_O is not significant enough, removed from profile. ...........5555 bp) .20....unknown_B is not significant enough, removed from profile. ..9020.Warning: Block unknown_E is not significant enough, removed from profile. viterbi algorithm progress: [%]: .....140...20........90............70.......90....examining piece ..40.1.....1090.50....209156 (9156 bp) ...examining piece 1..6071 (6071................80viterbi algorithm progress: [%]: .........50.......100....40........40..6205 (6205 bp) .80..100. 7040..50....10060...sampling algorithm progress: [%]: .........viterbi algorithm progress: [%]: ....6321 (6321 bp) ...........examining piece .....1. bp)..............30..50.... .......4851......... ...............20.....7010...............20...........viterbi algorithm progress: [%]: ....... (...viterbi algorithm progress: [%]: 10... ..40.......90............Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_I is not significant enough, removed from profile. ...Warning: Block unknown_J is not significant enough, removed from profile. ......sampling algorithm progress: [%]: ...4851 bp) ..60.Warning: Block unknown_W is not significant enough, removed from profile. ................50.........20............90viterbi algorithm progress: [%]: ..........................examining piece 2727..11287 (8561 bp) .........90.....10.....3050.......30...50......Warning: Block unknown_K is not significant enough, removed from profile. .viterbi algorithm progress: [%]: ...........40.20...40....50....80.........10080....20.....80........ 70....50...60....90.....examining piece ..40..................5090.....40...40..................50..70.70...........10.........60.7187..16394 (9208 bp) ....100...................100.........10.....30100...........30....... ...10..60...... .viterbi algorithm progress: [%]: 90.........................30.......30 30.......60...............Warning: Block .unknown_A...Warning: Block 10.unknown_A....100..100....40.........10.................................. is not significant enough, removed from profile. ..50. is not significant enough, removed from profile. ....10.....60..................... ......40.....10..100.............10.3070..examining piece 1..2989 (2989 bp) .90...examining piece . ........viterbi algorithm progress: [%]: .............. .80.40.....20......10.examining piece 1..3106 (3106 bp) 50........6880..examining piece ...viterbi algorithm progress: [%]: 1................10070......70....8050..sampling algorithm progress: [%]: examining piece 1..7536 (..7536....... bp)30.90......6561 (6561 bp) ...........60viterbi algorithm progress: [%]: 20.............60.6050.50......40......20...14766......80...60. ....100..... (7887 bp) ......50. . ........examining piece ..........40....20.....40............sampling algorithm progress: [%]: ...........20...viterbi algorithm progress: [%]: .........50.............................90........viterbi algorithm progress: [%]: .....60..............1010.....40.....40............20......10...70..................70..................5167..10..30......30......60..80....80....20..7080.60............40...................90.....30........100..20.......10924..10.Warning: Block 10........ ................5060.50... (..20...........5758........30.60....60...........unknown_D bp)....... is not significant enough, removed from profile. 100..........20...10....60.....20........90....90........... .................viterbi algorithm progress: [%]: .......................... 90....8010...examining piece 1..4214 (4214 bp) ......viterbi algorithm progress: [%]: ..........70......70....50.........40.30..............................................9020......70.....100........70...examining piece 1..2941 (2941 bp) .....viterbi algorithm progress: [%]: .....70...20.50..70....80...20........100. .....4040........70....50.... ..20.40.......70.3060.............20....90............40......100.sampling algorithm progress: [%]: ..............50100....60.....70....50........60..... ....20...80...examining piece ............. .......50..10Warning: Block ...sampling algorithm progress: [%]: .......30.....10...1......................unknown_B..........20.......................... is not significant enough, removed from profile. ..30.........sampling algorithm progress: [%]: ..100.50....50......30...30...........100......60.....40......4078 (4078 bp) ...viterbi algorithm progress: [%]: .....60...10.. .........20..Warning: Block .....40..unknown_G....... is not significant enough, removed from profile. .10.30.............sampling algorithm progress: [%]: ..50.... .....80..........80.........100........examining piece 1..4204 (4204 bp) ..... ....5030.............80..........................80.........10...60.......20.60...30.........................80........60...................50....10.80............70..........20viterbi algorithm progress: [%]: 30................30...50.....80....10.10...............Warning: Block unknown_I is not significant enough, removed from profile. ...Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O.60803090...60..........60...20..... is not significant enough, removed from profile. ......examining piece .......40.....1.20.40...60...........40......30.20....2440. (2440 bp) .80..viterbi algorithm progress: [%]: .................90.......70...........70......10..................70...............................70.............60...20.......10...90......examining piece 20...................................40.40........90..70.3090..1.......40....90..................90.........30.....50...........90...20....70.........70......20...70..........2344....10050........100....30.. (..............30....70..............30...80..................40....50...10......... 2344.......... ..................10..... bp).....50..30..70.sampling algorithm progress: [%]: ...30..........80............80.90. 60....20.......90............70..40.....40...40..........80..60.......100...................30..............40.60viterbi algorithm progress: [%]: .90....100..................100..............80.....3030..... .........40 50..................50.........60.2030.100..4050.40......80..80.80..70..............80... ...examining piece .......40........................100........50examining piece ...60.Warning: Block ........................40............60.......80........Warning: Block unknown_B is not significant enough, removed from profile. ...60.......Warning: Block unknown_H is not significant enough, removed from profile. ......10..90...50..50..90....70.................................60.......40.............20..1..examining piece ..30........17060100.......... ...unknown_F....39744080... (......examining piece .2045... is not significant enough, removed from profile. ..1..3976 (3976 bp) .......viterbi algorithm progress: [%]: ..40...................100.....190..2428 (2428 bp) 50100..viterbi algorithm progress: [%]: ............90............60.... (...3974.. ...........70.. ...examining piece 207090.....9090.....70...80..80.. .40... bp)....2045. bp) ...viterbi algorithm progress: [%]: ....70....70....... .........viterbi algorithm progress: [%]: ......60...................1..10.........sampling algorithm progress: [%]: .90.100....50...........402213.70 (............30............100..... .....80.................10020....... ....7040.50...2213....50............ .....................80........................50.30Warning: Block unknown_H is not significant enough, removed from profile. ...90..10Warning: Block ...Warning: Block ........ bp)...examining piece 50...50.....8060.........unknown_F.1......90....100...60.50.........40.10. .........50.80........unknown_A......20.examining piece .... is not significant enough, removed from profile. .......90703417.......50.. .....100.... is not significant enough, removed from profile. ..90..80..............100..2055Warning: Block viterbi algorithm progress: [%]: ................. .. (.Warning: Block 10unknown_Bunknown_A..100....70........3417. bp).. is not significant enough, removed from profile. .. ..Warning: Block 50.......examining piece .8531.80..... (......30....100 sampling algorithm progress: [%]: ...... is not significant enough, removed from profile. unknown_D.......Warning: Block viterbi algorithm progress: [%]: .........1.10....50.....90....1006477 ..60.Warning: Block 90.90 is not significant enough, removed from profile. .unknown_I is not significant enough, removed from profile. 100...........................80...70.............60..... ........... bp). ...40.10.....examining piece 614..19477 (18864 bp) .viterbi algorithm progress: [%]: .....90...30.examining piece .......unknown_C... ...60.4039viterbi algorithm progress: [%]: (examining piece ....20. is not significant enough, removed from profile. ...40........sampling algorithm progress: [%]: ....100..4039..examining piece .....50...Warning: Block .1..............unknown_P is not significant enough, removed from profile. 20...90....8106..26927 (18822 bp) 1..2811 (2811 bp) ..10...viterbi algorithm progress: [%]: ... bp) 60..90..10.80............................. examining piece 1..8814 (8814 bp) ........50................60...100.30.viterbi algorithm progress: [%]: .....6090....20......70..9738 .........viterbi algorithm progress: [%]: .............80.............8070......60....viterbi algorithm progress: [%]: .........sampling algorithm progress: [%]: .....100.... ..20......100... ..................100.... (9738 bp) ...60........sampling algorithm progress: [%]: ...20..10viterbi algorithm progress: [%]: .....20.............30..60.......100.........50...........30.....70100.10.20......................70...30.....10.................. ............. .........70..........40...80.......... .......30............6090....examining piece .100......40..160..80 .......10..... .....70............8060Warning: Block unknown_H is not significant enough, removed from profile. .Warning: Block unknown_I is not significant enough, removed from profile. ...sampling algorithm progress: [%]: ..examining piece 1..2843 (2843 bp) 30....60100...........40.30......sampling algorithm progress: [%]: viterbi algorithm progress: [%]: ...2053. (....40....60...902053 bp) ..examining piece 1..6099 (6099 bp) viterbi algorithm progress: [%]: .............20...........90...70... .....Warning: Block .10sampling algorithm progress: [%]: ...........90..........20...........80............unknown_D is not significant enough, removed from profile. .10Warning: Block unknown_G is not significant enough, removed from profile. ..................viterbi algorithm progress: [%]: Warning: Block .40........100...80..sampling algorithm progress: [%]: examining piece 1..3477 (3477 bp) ........examining piece ..20...unknown_A.................30....................1.90.....40 is not significant enough, removed from profile. .....5749...90...40...viterbi algorithm progress: [%]: ............70......... ...... (....30...10100...10.. ....1010.................70..50.......10090........80.................10..50..Warning: Block .50......40 .............70............80..40........sampling algorithm progress: [%]: ..80............5749.unknown_C.........60..... bp)...50...... is not significant enough, removed from profile. .sampling algorithm progress: [%]: ........20...........80 .....30......................40......examining piece 1..2698 (2698 bp) ...100...10.viterbi algorithm progress: [%]: .........50...70..........20......20......40..................50viterbi algorithm progress: [%]: ....20...70....90examining piece 1..5277 (5277 bp) ....50.............. ..30...............20.....viterbi algorithm progress: [%]: ....10.............................20........................60....................10.......3090.50.90..sampling algorithm progress: [%]: ........1050......20...60.....50..............................40......70..10..10..........60.80.....9050.......10...60100.....70.20......30...90..........70.................10..1030.....................60.....70................100..... .3080..................10.....100...40.....2070............50..........100....................50......8090.........30....70..20....1060..... ..20...................................40...........40100..100.....90. 40............................sampling algorithm progress: [%]: ..30..80........ ..... .............60....sampling algorithm progress: [%]: .............40.....10...........6030.......10....40....100.....80..70..50..100......10......Warning: Block unknown_D is not significant enough, removed from profile. ... ...sampling algorithm progress: [%]: .........50100............sampling algorithm progress: [%]: ........20... .10.......60.80..20...30...3060................... ..... .......examining piece .........100........70..80........80...50.......70..1...............sampling algorithm progress: [%]: .60..............sampling algorithm progress: [%]: .50.....50...sampling algorithm progress: [%]: ...70.....60.100..20..........80 ...........90.70...... .......................sampling algorithm progress: [%]: ......................30.2195..........70...... (2195 bp) ....viterbi algorithm progress: [%]: .....20...70........80..20...30.....20...20.............906040..30......90......examining piece 1..2564 (2564 bp) ......viterbi algorithm progress: [%]: ...90..................10.................40...7060.40..............sampling algorithm progress: [%]: .............60.................80...........10....60.......1060......................80.............50......90.........10......80....20.............20............80................................30.......60..10......100.....10....50.100...70................10......70.....10....90....30.. ............40....30..........30......4020...................20..100.....90 80...30.......8070..100...................60...50.....40........100...30.. ....70 ..10..sampling algorithm progress: [%]: 70...5090.20..........90...................90.... ..20...20..10.30.40...........80..........................................70.............3040.sampling algorithm progress: [%]: ......sampling algorithm progress: [%]: ......2040...............20........20....60......................................90.........90....80...80..........40.40.......50......10.................Warning: Block .......unknown_A..70.10 is not significant enough, removed from profile. .......80.70............30...80....100.....Warning: Block ...Warning: Block ...................70........50......50.........100......20 .............5080.........100...............unknown_B.....30100................ .... 30......... is not significant enough, removed from profile. ............unknown_L.................70..40Warning: Block unknown_L is not significant enough, removed from profile. ..........................30.........80.....90...100.sampling algorithm progress: [%]: ...examining piece 1.50.50. 80.. is not significant enough, removed from profile. 90......209010.........40.8020.examining piece 1..4417 (4417 bp) ....30viterbi algorithm progress: [%]: ......60.......sampling algorithm progress: [%]: ...........70...60..........80.20......20...90...examining piece 1..6740 (6740 bp) ..............6152 (6152 bp) ...............................60......10................60...20.....50.40.....................10...............30...........50examining piece ..1.....70.....60...40.....60..30.........20....30 .40...viterbi algorithm progress: [%]: .....80.....90...60.70.4020.............................................3030.20......90.......70......................viterbi algorithm progress: [%]: ........90100................100.............50...80....100..8080.8268............100 (...................100......................40.100.30.. ...........60.......30....50.60......70.8268 bp) 90... ......... .40..viterbi algorithm progress: [%]: ................................. 40.50.........sampling algorithm progress: [%]: ..40... ........90........40.........90....... ..sampling algorithm progress: [%]: .100.....80........90.90...50.......60sampling algorithm progress: [%]: .............70.70..304060.......examining piece 1..3974 (3974 bp) 50.......viterbi algorithm progress: [%]: ..50.....30.. ......3030.........70..10100.........7040.............60..........80.................90...10100.10.....100 ....................sampling algorithm progress: [%]: ...........sampling algorithm progress: [%]: ....10.40.7050..........90.. .....50.....100..........50...60.................sampling algorithm progress: [%]: .....80.............................examining piece 1..3976 (3976 bp) ........50..viterbi algorithm progress: [%]: .............60.......examining piece 494..6852 (6359 bp) ......100........ ..viterbi algorithm progress: [%]: ........... ....10...70..........60....90....50.70......20.80..... .........90...90.................................70..10...............80sampling algorithm progress: [%]: 40...80...........40examining piece ................60....202090..........30.....................1..3981. (3981 bp) ....20.viterbi algorithm progress: [%]: ....10...90..................10.........70.....60.1080..40.....90.100..................10.....40....30...60...........60.....10020..... ........70.......sampling algorithm progress: [%]: ........................60....................100....100... ..100...20......308040.......30.....70...........80............100.50.....10.60examining piece ....90... 90.100.. . .80...........10............. .......sampling algorithm progress: [%]: ..........................50........10.....10...90........80......90.................................50.....sampling algorithm progress: [%]: .....80.1..2117 (2117 bp) ......sampling algorithm progress: [%]: .....70....2050..70...........80.... .....1020.....sampling algorithm progress: [%]: ...505090examining piece ....viterbi algorithm progress: [%]: 2977..8701 (5725 bp) ..........80..................20.........90...20............10................viterbi algorithm progress: [%]: ..70.....50...90..100.... .....8090...60......examining piece 1..2375 (2375 bp) 50..100viterbi algorithm progress: [%]: ....70..40.... .....30.70...100..........20............70................ ...20....30.................sampling algorithm progress: [%]: .60.....60...................80........................................20..10.........10010060......... ...20...........100....20.....10.........30examining piece ....sampling algorithm progress: [%]: .........1060... . ...1020..1..40........examining piece .30...............40........................20.....sampling algorithm progress: [%]: ...50..................1.40..........3832. (3832 bp) 80.....viterbi algorithm progress: [%]: .10090.80......30...10......... .100..................10...examining piece 1..3974 (3974 bp) ...702040........30......9030.70.......80.....70.........60..........40............100......90...........4857 (4857 bp) ...........viterbi algorithm progress: [%]: 80Warning: Block unknown_D is not significant enough, removed from profile. Warning: Block unknown_E is not significant enough, removed from profile. ..............Warning: Block unknown_O is not significant enough, removed from profile. ...60.20.60.........30....2010..viterbi algorithm progress: [%]: ...... 30.......10....20.examining piece ...........................50..80...............40..........1.....80....... ....20........70.........22053.30......... (.40...................10.......80.....Warning: Block ....30.90..70...............60...22053 bp) .30unknown_A is not significant enough, removed from profile. ................Warning: Block unknown_M is not significant enough, removed from profile. ..sampling algorithm progress: [%]: ...40.....60.100...........40..........1080...viterbi algorithm progress: [%]: .......................30................ .........40......7040............examining piece ...............1..6245 (6245 bp) .....40...100............3090.....30...2030..100........70......90. .30..70..sampling algorithm progress: [%]: . .....50.10....50...............30.....20...viterbi algorithm progress: [%]: 40.........8090........109090........90....4090.........40.......................9020...........Warning: Block .....40.10...50..................30....unknown_A...Warning: Block ........5010........unknown_C..20...................... is not significant enough, removed from profile. ......80...................50..90examining piece . is not significant enough, removed from profile. ....20.................100...Warning: Block .....unknown_E is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. 50...examining piece 1..5712 (5712 bp) .Warning: Block unknown_L is not significant enough, removed from profile. ..Warning: Block unknown_N is not significant enough, removed from profile. .50...............50..1.......50..70..40.30..........examining piece 1..2446 (244650............viterbi algorithm progress: [%]: ........80.80...100................10. .......... ....... bp)... .6526......100100..40.......60................100..20...60..viterbi algorithm progress: [%]: ... .... (.. 50..40.100.......sampling algorithm progress: [%]: .......50....100.. ...40..100.....90..................................30........ ......80....304060..20....... ......40.. .......3020............70...........5060.100...........6526 bp) .........60......viterbi algorithm progress: [%]: .............. ........30.....30...................40........70..10..80..100........40..sampling algorithm progress: [%]: ..100..30... ..90..60...20.....Warning: Block unknown_A is not significant enough, removed from profile. ............Warning: Block unknown_H is not significant enough, removed from profile. Warning: Block unknown_A. is not significant enough, removed from profile. ...9060...Warning: Block unknown_L is not significant enough, removed from profile. ............Warning: Block unknown_H is not significant enough, removed from profile. .......100................... 60.....90................60.50.......examining piece 1..4600 (4600 bp) ........viterbi algorithm progress: [%]: ....90...........50.....examining piece sampling algorithm progress: [%]: .examining piece 1..3201 (3201 bp) .10.viterbi algorithm progress: [%]: ..............10.................10...10......50.......40.....Warning: Block ...60.......70....unknown_A. is not significant enough, removed from profile. 80.40......Warning: Block unknown_E...701..2464 (2464 bp) .60viterbi algorithm progress: [%]: .....60..Warning: Block unknown_A is not significant enough, removed from profile. .......Warning: Block unknown_D is not significant enough, removed from profile. .. ....5050.....20..40..100........ ...............4040 is not significant enough, removed from profile. ..............60..........examining piece 1..6630 (6630 bp) ........90....100......viterbi algorithm progress: [%]: .......7060.....50.50.10. ...examining piece 1..4132 (4132 bp) .examining piece 1..2551 (2551 bp) ..10viterbi algorithm progress: [%]: 100.viterbi algorithm progress: [%]: ......80...80.70.........examining piece 1..2375 (2375 bp) ..........examining piece ...50.....examining piece ..1.......................40......1...8054 (8054 bp) ......... ...viterbi algorithm progress: [%]: 70.......30.........80..100..301050............viterbi algorithm progress: [%]: ...2392 (2392 bp) .........100..........30...............................50.......viterbi algorithm progress: [%]: ....70....2070.10..2050......90.20.......90.........................................100.............70.... .............. ...........10100.30.....sampling algorithm progress: [%]: .....sampling algorithm progress: [%]: 70... .....70....................60.80..50.5010.20........50...7090109010examining piece 1..2983 (2983 bp) ......30viterbi algorithm progress: [%]: .....20.....60.....20..........sampling algorithm progress: [%]: ................80. .................10......1050..examining piece ...........40.....................60....................10....60.............100...........20 .70......examining piece 1..8709 (8709 bp) .20...............301......70..20..60...20.................80....60..10........50......3090......60100...80.viterbi algorithm progress: [%]: .......................................10......60.20........10.... ..40.60Warning: Block ........10..70................9947........ (9947 bp) .....sampling algorithm progress: [%]: ..........viterbi algorithm progress: [%]: ....40......................................70...10...........unknown_C..2030.... is not significant enough, removed from profile. ...100.20.3090............................80.30.....Warning: Block ... ........unknown_D70...40.......90...........40........................................80.70.100...70...........60.8040........ is not significant enough, removed from profile. ..... .Warning: Block unknown_F is not significant enough, removed from profile. ...Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. ..Warning: Block unknown_O is not significant enough, removed from profile. .30...50....4030.........90....50....80..60....................80..100.....Warning: Block unknown_F is not significant enough, removed from profile. .........70......40..30examining piece 1..3172 (3172 bp) 30............20...60... ..............70.......20.......sampling algorithm progress: [%]: .40.....10...........20......50....viterbi algorithm progress: [%]: .................80..examining piece ...30...80...........60.......80............20.20.70...50..........40.............30....2088..10.........70Warning: Block .............80.20..80...90.....70........60.....7275.......40..........unknown_T.40.............. (... is not significant enough, removed from profile. .......5188....80....sampling algorithm progress: [%]: .........60.....Warning: Block 90100.80.10....2080...........50................................ bp)...unknown_U .............viterbi algorithm progress: [%]: ....... ..........30...40...........60.................................50.70...90.3020.....30....sampling algorithm progress: [%]: ..90. is not significant enough, removed from profile. ...60.....30.90..100.80..........40... .......Warning: Block unknown_W is not significant enough, removed from profile. 90......Warning: Block unknown_AB is not significant enough, removed from profile. ...80....5050.20.................80..10....50...2030..Warning: Block ......70..........60.......5040..unknown_AJ.........100..20. ...........Warning: Block unknown_T is not significant enough, removed from profile. .Warning: Block unknown_U is not significant enough, removed from profile. ..70. is not significant enough, removed from profile. .......70.....Warning: Block 90.....40Warning: Block .90......................50......40.............60........90....80...........10.........................70............80...30..........40............unknown_AN....unknown_WWarning: Block ......60......40..... is not significant enough, removed from profile. .100....20 is not significant enough, removed from profile. ......90.7060. .........50.........................unknown_A70...Warning: Block ...90....1040..50........unknown_AB100..examining piece ..... is not significant enough, removed from profile. ...30.60100.. is not significant enough, removed from profile. .......1.90..90...Warning: Block .........60........unknown_H.Warning: Block ...30...........3974. ...30 (unknown_AJ..90.... is not significant enough, removed from profile. ........ ............Warning: Block .3974... is not significant enough, removed from profile. .........80..........90.....unknown_M..50....70...90....Warning: Block .100.. bp)...80...50 is not significant enough, removed from profile. ....examining piece 1..2531 (2531 bp) .Warning: Block unknown_P is not significant enough, removed from profile. ........................unknown_AN...40..50... ...100viterbi algorithm progress: [%]: ....50......viterbi algorithm progress: [%]: .....Warning: Block ....... 100.100.......10.... is not significant enough, removed from profile. ..80..40.... ...unknown_S..70...80..........60.......60.10050...examining piece 1..9911 (9911 bp) .90.....40....... ......50viterbi algorithm progress: [%]: ........100.......100. .... Warning: Block unknown_B is not significant enough, removed from profile. ...Warning: Block unknown_E is not significant enough, removed from profile. 3010040Warning: Block unknown_G is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. ..100.30........ is not significant enough, removed from profile. 90..........sampling algorithm progress: [%]: ... .......60......examining piece 6572..12867 (6296 bp) ...20...sampling algorithm progress: [%]: 80.viterbi algorithm progress: [%]: ........20.......100.....60...Warning: Block .....sampling algorithm progress: [%]: ...........unknown_T.90...sampling algorithm progress: [%]: ... is not significant enough, removed from profile. ....... ..................70...80........Warning: Block . ..60..examining piece ..100.....1..6827 (6827 bp) 70........viterbi algorithm progress: [%]: ................60Warning: Block unknown_G is not significant enough, removed from profile. 80.....Warning: Block unknown_D is not significant enough, removed from profile. ....Warning: Block unknown_J is not significant enough, removed from profile. ........ ..........50....unknown_A. is not significant enough, removed from profile. .......................50..80.4010..examining piece 1..2553 (2553 bp) 100....examining piece ..1..2542 (2542 bp) ...viterbi algorithm progress: [%]: examining piece 1..17326 (17326 bp) ..........40...10examining piece 1..3739 (3739 bp) ..........30.6010...sampling algorithm progress: [%]: ....50.examining piece 1..5670 (5670 bp) ...50..viterbi algorithm progress: [%]: .......90.70...... ......20.......viterbi algorithm progress: [%]: ........viterbi algorithm progress: [%]: ..............sampling algorithm progress: [%]: .............80...70...10.................4020.sampling algorithm progress: [%]: ...................90..70.10.............10......40...................................90........100........80....20.7010.viterbi algorithm progress: [%]: .......20........50..60..........80..............80...9090.90..100.. ..................10..70............30.........10..60..........60...10...........60..............50...................100.................. ............examining piece 1..1419 (1419 bp) ...30viterbi algorithm progress: [%]: ..30..60.....90..1060.....70............................60.....5060.30.....................100...1080..... ...........10..90......30.............100.sampling algorithm progress: [%]: . ..10...20......9020..100.10......50..50.................100......... ...70.................90.sampling algorithm progress: [%]: .100....10......................4010......20............. ................40..80.70 90...............20...sampling algorithm progress: [%]: .....20.....70....sampling algorithm progress: [%]: ......sampling algorithm progress: [%]: ..................................70...40......50.............60.......20........... 20...10....70.40.....20.....examining piece ...100..........examining piece .70.......sampling algorithm progress: [%]: ..................100..80.........80........10........60...11.........40.... ....10..80..30........70...90....................80.....20..................100........30......30.....sampling algorithm progress: [%]: ....7030....303766 (3766 bp) .....3020viterbi algorithm progress: [%]: ................2010.70.....60.....60.......2040. ..................60.20.......60.10..........................sampling algorithm progress: [%]: .8411.....10................................. (....100...90.30.70..........70....3020.70..8411.50..............100......50......100 bp)..........1090.......................... ..20.80 .50....30.1050..30....................................20..5040.........40........................70......100.80..90..........30.....viterbi algorithm progress: [%]: .......3070.......90..... ...sampling algorithm progress: [%]: ..................................sampling algorithm progress: [%]: ......80....40...........sampling algorithm progress: [%]: ...............80......100......3090..... ..30......40.6070......40...40..80.....10...........40.........10..20..........1040...60.100..... ..... 60........40.....10.......50...........................................................90...............sampling algorithm progress: [%]: 40....30...60..40................80.............50.......20..80.....10.Warning: Block unknown_D is not significant enough, removed from profile. .....Warning: Block unknown_H is not significant enough, removed from profile. ................50...70.50...........................50....examining piece 1..6034 (6034 bp) ...examining piece 1..3259 (3259 bp) ...viterbi algorithm progress: [%]: .50......20....50.viterbi algorithm progress: [%]: 30.80......80.............60.examining piece 1287..6832 (5546 bp) 100...............................50.viterbi algorithm progress: [%]: ...........60.....70...................100...60.8020.......90.10010.. ..70.......100..30. .....50..20........9090......... ..20......................10....20...80........70...sampling algorithm progress: [%]: ......20........70..80........ .........50.....10.....90..60..................20..sampling algorithm progress: [%]: .30................90......80.....7010..................70....20.......50......70...30...60..........30...90........................................10.................20........60.......80...Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. .........90....90...30............................40................20...Warning: Block unknown_H is not significant enough, removed from profile. ...30.............80.......100............ .........60...40..20...examining piece 1..3976 (3976 bp) 90....90.70..viterbi algorithm progress: [%]: ..100.....3070.10......90examining piece 4367..12228 (7862 bp) ..............viterbi algorithm progress: [%]: ............ ..60.............4060..70....100....9020sampling algorithm progress: [%]: 20............30....90......... ................60....10........90Warning: Block unknown_H is not significant enough, removed from profile. .......40......................60..........100....... ......40......sampling algorithm progress: [%]: 100.10.40.80..... 100.........................examining piece 30..........50........80......40............30...............100...20..70. ..............40.............40....4080.30.................50............50...................70..70... ..70100...80...110020...30100.90...60...30...3894 (3894 bp) .. .........viterbi algorithm progress: [%]: .....10....sampling algorithm progress: [%]: ............40.. ........100............. .....70.....10.3070....30...... .............100...............................80.................80 ...40..........50..70..........10....sampling algorithm progress: [%]: .......6040......................50................20.................90..100........100.sampling algorithm progress: [%]: ...50...... .......40.....8090.40...sampling algorithm progress: [%]: ........60.50.......40........10....80....10......2080.Warning: Block unknown_C is not significant enough, removed from profile. ............100.... .40.......70..examining piece 1..6211 (6211 bp) ..........50viterbi algorithm progress: [%]: .examining piece 5437..10890 (5454 bp) ....20.50..viterbi algorithm progress: [%]: ...8090..............examining piece .1..3452 (3452 bp) examining piece 1..2773 (2773 bp) ......viterbi algorithm progress: [%]: ..................80.80..70........60...................viterbi algorithm progress: [%]: .....examining piece ........60..examining piece 1..8736 (8736 bp) .9060...........90.........100100......5872.....11325 (5454 bp) ......80.100......9090viterbi algorithm progress: [%]: ..... ... .30.........50...30.90viterbi algorithm progress: [%]: ..50.examining piece ......80.....50... .10..60.50.....20...................30.........80...................6060.....20......100.... .......40.......... .....................5070...................sampling algorithm progress: [%]: 50.1.................10..............10050............. ........4080..........40.......1090.......10..100..sampling algorithm progress: [%]: .80.20...70.............60...Warning: Block unknown_B is not significant enough, removed from profile. ..................10.. ....70...70.................80.......2808 (2808 bp) 60..viterbi algorithm progress: [%]: ...sampling algorithm progress: [%]: .............90..Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. .......Warning: Block unknown_F is not significant enough, removed from profile. .....................examining piece 1..5969 (5969 bp) .................100....Warning: Block 50.unknown_B.30..viterbi algorithm progress: [%]: .... is not significant enough, removed from profile. .6010......30.100.........Warning: Block unknown_K is not significant enough, removed from profile. ..70......20......60.........70...Warning: Block unknown_B is not significant enough, removed from profile. 3020...Warning: Block unknown_E is not significant enough, removed from profile. 1080.......2020......80 .......10Warning: Block .unknown_I is not significant enough, removed from profile. .......Warning: Block unknown_S is not significant enough, removed from profile. Warning: Block unknown_T is not significant enough, removed from profile. Warning: Block unknown_U is not significant enough, removed from profile. ...Warning: Block unknown_X is not significant enough, removed from profile. .examining piece 1..6338 (6338 bp) ......examining piece 1..5152 (5152 bp) ...1010........viterbi algorithm progress: [%]: ..30.............10....6070.... 1050....8060....50........100.........................................90....................1090.....sampling algorithm progress: [%]: ..................................80......viterbi algorithm progress: [%]: examining piece ......70................40...................80.20....8040.20.100.... ...20......9020...80....705000........Warning: Block ..........90..100.................7010unknown_G...60...90......... ....... .. is not significant enough, removed from profile. .10.........2060...................sampling algorithm progress: [%]: ....12371 (7372 bp) ....90......viterbi algorithm progress: [%]: ...............40..60......................examining piece 11207..21597 (10391 bp) ...............3030...30.....30.............viterbi algorithm progress: [%]: ...9090.......20...2020..................80.20...................100.......10........................20...4030.........60Warning: Block .10.unknown_G.....30......100................30100...70.....20....100.......90... ... ............sampling algorithm progress: [%]: ...examining piece 1..3277 (3277 bp) ....70.viterbi algorithm progress: [%]: ..409090...............30....50............40.......30........20.30.............sampling algorithm progress: [%]: ..... .......................703040...9070..... is not significant enough, removed from profile. ..50.60.....Warning: Block .................unknown_H...........10............ is not significant enough, removed from profile. ..80.....10....80.......30......40..Warning: Block ....10...examining piece ....100Warning: Block unknown_K is not significant enough, removed from profile. ..... ...........40......40..................1.10040..7040...examining piece 1..2191 (2191 bp) ....viterbi algorithm progress: [%]: .. ..20............80.....unknown_A.40......30..30.....100.....10100...50.......................................30....Warning: Block unknown_E is not significant enough, removed from profile. .Warning: Block ..............30... is not significant enough, removed from profile. .....unknown_G....10029. (10029 bp) .80......Warning: Block ...... .............20.viterbi algorithm progress: [%]: ........60.. 50..........100....40....30 ...90.............. is not significant enough, removed from profile. 7010..........50Warning: Block 80..unknown_E.....unknown_K.30..examining piece 8040..90..504080...501..50...5040..... is not significant enough, removed from profile. ............ is not significant enough, removed from profile. Warning: Block unknown_G is not significant enough, removed from profile. ...Warning: Block unknown_K is not significant enough, removed from profile. Warning: Block unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. .........50.............100...........................examining piece .Warning: Block .Warning: Block Warning: Block ..unknown_F9208..........20.50.......100....90.301..7760 (7760 bp) .... ....sampling algorithm progress: [%]: .......viterbi algorithm progress: [%]: .......20.20.unknown_L is not significant enough, removed from profile. Warning: Block unknown_M is not significant enough, removed from profile. ..... (9208 bp) ........60............60............5020...10........examining piece 1..7852 (7852 bp) 50.........viterbi algorithm progress: [%]: ............ is not significant enough, removed from profile. ......40...10.. viterbi algorithm progress: [%]: .....................90..................unknown_K.60.......90............100...... is not significant enough, removed from profile. ......70......70........4020.examining piece .............70......20..1...........90...60..........30...90......5040......40.20..6060.........6949..examining piece ..examining piece 70..90 .50....1209..1.............40... (...30..........80..........examining piece 7429.694960....90 bp).....50........50.10............. (7340...1....... 90....10....10....1007429 bp) ..40...30. (viterbi algorithm progress: [%]: 6132 bp) ........100......50....viterbi algorithm progress: [%]: 80....... ..2977...60.......... (.....viterbi algorithm progress: [%]: ..30....60....2977. bp) .viterbi algorithm progress: [%]: ....50................10...........3030.70....100... ............examining piece ...........40...10...30......60...60.1..6850 (6850 bp) ................viterbi algorithm progress: [%]: ..60examining piece 1..11908 (11908 bp) ..........10........70....viterbi algorithm progress: [%]: .......30.....80... ...............sampling algorithm progress: [%]: .....................6050...................40....90...............80..70......................60......100.sampling algorithm progress: [%]: ..............................807010.....50100..80... .50........100.....70.......90...50..............50........40................40..40...........4020................ ................100.............20.90......................4060..70.....7010.....50..20.........10.50......7080................90.......60..................60.80.......50...70........10.20.100...80. .............60.................40.......... ........90....20...................20.60.. .........1090.70......80....4010...................5010..................70sampling algorithm progress: [%]: 20..sampling algorithm progress: [%]: .70examining piece .........................100........100.. .60.50.....80.60...........sampling algorithm progress: [%]: ..Warning: Block ...............................10060........1unknown_A90 is not significant enough, removed from profile. .............70..80.........60.....................80.1975Warning: Block .20. . ...... (....90.30....1975.Warning: Block ..unknown_L20........30........70..30......unknown_I. is not significant enough, removed from profile. ...70... bp) ..80..viterbi algorithm progress: [%]: ..........50....20...........6020..................90....sampling algorithm progress: [%]: .80.............90 is not significant enough, removed from profile. .30..................examining piece ..............examining piece 1..3572 (3572 bp) 70...viterbi algorithm progress: [%]: ...30....70....70...............100.1...90....examining piece ...30...60.80..................1..30..................90 ..90...1030.5961....50..60......100.......50....sampling algorithm progress: [%]: .80.........100............10............... ......9352..80.... (...40.90... .....9352..........10............. (...5961... bp).....104020.80100.20.30......100. bp)sampling algorithm progress: [%]: ..60......... ...40.sampling algorithm progress: [%]: ....100.........50... .........viterbi algorithm progress: [%]: . ......................viterbi algorithm progress: [%]: ...70.....100..........80....... ....................... .....50Warning: Block unknown_E is not significant enough, removed from profile. .............40.90..........40....100........90............10.20....70....sampling algorithm progress: [%]: ....6060...........30......50...10070...80.examining piece 1..8022 (8022 bp) ...sampling algorithm progress: [%]: ..1040..........................20. ...80....90..viterbi algorithm progress: [%]: ................ ........1010........sampling algorithm progress: [%]: .....10.20......sampling algorithm progress: [%]: ....40.........................70......30......70..............40......Warning: Block unknown_E is not significant enough, removed from profile. ...8030....60...............................examining piece 1..3337 (3337 bp) ..90..viterbi algorithm progress: [%]: .....100...70.....80..................100.......30..30....1009040....20.....10.......................70...... .....100..8020............10....90....80..10.........20..7010...50........30.6020...40............. ........5010. ....30.................................60..........30..40...................100............. .. ....90...90..10.....sampling algorithm progress: [%]: .7040.......40100.100.40...........90........................ 3020...........sampling algorithm progress: [%]: ..50........................sampling algorithm progress: [%]: .............................60....................90..10..... ..50..............2010............30..10.50..Warning: Block unknown_E is not significant enough, removed from profile. ..2040..70.....sampling algorithm progress: [%]: ...............40....50.....70.................80...60......examining piece 1..4862 (4862 bp) ......viterbi algorithm progress: [%]: ........10...8010......40.70.............................70...............................20.......5060.........50............20........70................30.........80......30..20......20.................100.................60......6050.........100....... .30.............20....40....sampling algorithm progress: [%]: ....................50...............100.8020........ ........ ......30..60.50.90.....80.....100..80......40....100..90....4030... ........50.10............20...30.......30..40...20..........20..80..................................40...30.........50......10..........10.90..... 60..........90.......examining piece examining piece .examining piece .............70........50....90..20....90...........8050..1819..6030........1.....801..............100.........50............80......10.60......602869. (2869 bp) .40.viterbi algorithm progress: [%]: ..............1002164 (2164 bp) ...viterbi algorithm progress: [%]: .......100.....7050.............40....20..........sampling algorithm progress: [%]: ...30............50........90.....7412 (5594 bp) 40...........viterbi algorithm progress: [%]: ...... ............40...............10..40.... .........................50.. .60....3080...40...............30....60.......sampling algorithm progress: [%]: .....60..sampling algorithm progress: [%]: ..........10060..30....sampling algorithm progress: [%]: ..........70.60.... ....70..........70.......20...100............................90.40. ..........10050........ .....examining piece 1..2182 (2182 bp) ......viterbi algorithm progress: [%]: ...........7040.....80......2010..50.................10.........70......sampling algorithm progress: [%]: .20...........10.....80........30.......60..............70...40....70.....10.......70.........9020.....80.........50...80....50...............90.........40......10060..................................Warning: Block unknown_C is not significant enough, removed from profile. 70...............9010.............60.....Warning: Block ..............50.examining piece 2729..........30...........examining piece 1..14854 (14854 bp) ..50......60...viterbi algorithm progress: [%]: unknown_G is not significant enough, removed from profile. .......10167.. (7439 bp) ..10..100...viterbi algorithm progress: [%]: ...30.90.5090.................70...60...................80.5090......20.100.20....examining piece 20.................80.60.....100 ......90.......30...80.40.............50...........................................60.1...Warning: Block ........................20.... ..100... .sampling algorithm progress: [%]: ....30..... 5722..60.40........ (5722 bp) ...unknown_A is not significant enough, removed from profile. ....Warning: Block unknown_E is not significant enough, removed from profile. ...viterbi algorithm progress: [%]: ....60..100...70..90..70... .Warning: Block unknown_R is not significant enough, removed from profile. ........30............................................606050.......30............4080.............8030.20..90...........90......100..7040 .40..........70........Warning: Block 70....90................30.......50...unknown_I is not significant enough, removed from profile. ........80...6010....60.........................................704050........20........Warning: Block unknown_N is not significant enough, removed from profile. ...................10040.......................examining piece 1..4154 (4154 bp) .50....examining piece 1..3293 (3293 bp) ..viterbi algorithm progress: [%]: .....................7050...50Warning: Block unknown_I is not significant enough, removed from profile. ..70..........1005010080..examining piece .....40..80....20. ....10070.. .60..Warning: Block unknown_E is not significant enough, removed from profile. ..... .viterbi algorithm progress: [%]: ..10...examining piece 1509..9758 (8250 bp) ..80........70...............80....1..6519 (6519 bp) ..viterbi algorithm progress: [%]: .....viterbi algorithm progress: [%]: .............................sampling algorithm progress: [%]: ..........60....90...90..50.100......40......50.......... ...80.50.......30..............30..90...Warning: Block unknown_D is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .....60Warning: Block unknown_L is not significant enough, removed from profile. ..............8010.....3060 ..60.....examining piece 1..8665 (8665 bp) ..70..80...............80.sampling algorithm progress: [%]: .................................examining piece 1..3765 (3765 bp) ....60.viterbi algorithm progress: [%]: .............100....viterbi algorithm progress: [%]: .......100............100.10..... 20 ....10...60..............3060.....examining piece 1..3957 (3957 bp) ....viterbi algorithm progress: [%]: .......60........sampling algorithm progress: [%]: .............90..sampling algorithm progress: [%]: ....90...................40.................70..30.........10 ....90.10..40..............80...70....9070.......70.................20........70.....20..10.....90......80....Warning: Block unknown_Q is not significant enough, removed from profile. 90...........40...70......40..................80...........100.................20.......7070........60... 20..............80....70....examining piece .Warning: Block unknown_Q is not significant enough, removed from profile. ........................50.......................40...sampling algorithm progress: [%]: .................9070........sampling algorithm progress: [%]: .....80....examining piece 1..3031 (3031 bp) 10....viterbi algorithm progress: [%]: ..80...100.100100...90.1...10......80.40100..2569...............80. ..90..... ........... (...80.1002569 bp).30......10 .............70..... ....60..viterbi algorithm progress: [%]: .........10....10......... ........80....50...80.....80.............100...... ....50.70....90.20.......90...............60.....60......30...sampling algorithm progress: [%]: ...............20..............30...........50........100..........20..... .............................. .......90..80....90.sampling algorithm progress: [%]: sampling algorithm progress: [%]: ..10......20.80...30........................80...........90....50.........60.............40.sampling algorithm progress: [%]: 30...90.....30..80.......100..............100.10... .............sampling algorithm progress: [%]: ......examining piece .1..8219 (8219 bp) ....4090viterbi algorithm progress: [%]: ......4010examining piece 1..13612 (13612 bp) ....10...10.............viterbi algorithm progress: [%]: ..90...................70...........40..................70......80........90......10100.......60.sampling algorithm progress: [%]: ....20. ........30..100.90.................. ....10............................................. ....100....sampling algorithm progress: [%]: ........70......80..........1050...........10..........90.............10.20.......5050...80..10......................10........60..90.90100......90100....... ....20100.....5090........ .....70......2090................30....90.60..10....20..............90...........examining piece 1..13885 (13885 bp) ......100......40.......viterbi algorithm progress: [%]: ..........................30......... .30...100..........20...100........5020 .. .......40..60.60..........40. . ....10.....100......100100.20..sampling algorithm progress: [%]: .20...1020....examining piece 1..6071 (. 10.sampling algorithm progress: [%]: ..20100......Warning: Block unknown_A is not significant enough, removed from profile. .50...50 ........30.............100...... ........examining piece 1..3710 (3710 bp) .... .viterbi algorithm progress: [%]: .... .60.............100....60.....6071....100... bp)sampling algorithm progress: [%]: 70... .60........sampling algorithm progress: [%]: .sampling algorithm progress: [%]: ........Warning: Block unknown_A is not significant enough, removed from profile. .....10. ......viterbi algorithm progress: [%]: .......70..sampling algorithm progress: [%]: ........................70.............3030.examining piece 1...2474 (2474 bp) ....90.viterbi algorithm progress: [%]: .....20....................10..........100...20...........20....................examining piece 1..1438 (1438 bp) ...100.examining piece ..viterbi algorithm progress: [%]: ...............30.10...60.......70....examining piece 40.Warning: Block .2284.1...40....sampling algorithm progress: [%]: ....unknown_A100 is not significant enough, removed from profile. .Warning: Block unknown_B is not significant enough, removed from profile. ...Warning: Block unknown_H is not significant enough, removed from profile. ...70......9354 (7071 bp) ...........viterbi algorithm progress: [%]: .....4281 (4281 bp) ..1040..viterbi algorithm progress: [%]: 80........80........70sampling algorithm progress: [%]: .......30............80..1040.............50......10. ........... ............20..........Warning: Block ..unknown_T..80..90................70.... ......30......40..20...50..............30...................sampling algorithm progress: [%]: .20..........sampling algorithm progress: [%]: ..50................50.10...sampling algorithm progress: [%]: ......30.......70..............80.10.........203010.............60............ is not significant enough, removed from profile. ......20.............10..60.......................8090..20..50.1020..............................................................examining piece 1..9428 (9428 bp) ..30.......90..70....10..........80....40....viterbi algorithm progress: [%]: ..........30..............30.......................10010..........80..20.....80..80..40..20....4050...90..20..60...........30.10....10...........30......... ..........90....70.70.......100100..... .......... .50........90........100.... ............................40......10.2010..50...................7040..sampling algorithm progress: [%]: .....30......30..........................30.....90......20......................................40.examining piece 1..3681 (3681 bp) ....viterbi algorithm progress: [%]: .....90.10.....10040....90... ..20.....10010Warning: Block unknown_K is not significant enough, removed from profile. ...80..60.60.........40....2050.........30.................40..Warning: Block ...Warning: Block 100..40......unknown_C is not significant enough, removed from profile. .Warning: Block unknown_F is not significant enough, removed from profile. Warning: Block unknown_H is not significant enough, removed from profile. . examining piece 1..15990 (15990 bp) ......... ..............viterbi algorithm progress: [%]: .60.............unknown_G is not significant enough, removed from profile. 20Warning: Block unknown_I is not significant enough, removed from profile. .Warning: Block unknown_J is not significant enough, removed from profile. ........30........50..sampling algorithm progress: [%]: .....40...............5020.....60...90examining piece 1..3133 (3133 bp) ..60....10.40............90........viterbi algorithm progress: [%]: ....examining piece 1..6134 (6134 bp) ......100..viterbi algorithm progress: [%]: ......................10..30.....10....60..20.........70......................30.........30. ......50........20.......................50....7070....80.20.......20.................70........................100sampling algorithm progress: [%]: ..........................Warning: Block unknown_C is not significant enough, removed from profile. ..Warning: Block .unknown_F is not significant enough, removed from profile. ......Warning: Block unknown_P is not significant enough, removed from profile. Warning: Block unknown_Q is not significant enough, removed from profile. Warning: Block unknown_R is not significant enough, removed from profile. ..8070.......40..................30......30....30...6040... ..............90...............2050.....90....60.10examining piece 1..5113 (5113 bp) ...100.....viterbi algorithm progress: [%]: ...... .....................................100..40.70...80..4040...sampling algorithm progress: [%]: ..........100 30...20. .......60......1070.30...40............80...sampling algorithm progress: [%]: .100..............10...............50..100............50.........80.....30.................2010.........50.......20.10........ ..........30...........20.............40..........60..30........5080...........Warning: Block unknown_E is not significant enough, removed from profile. .40......20.90.....Warning: Block unknown_F is not significant enough, removed from profile. ....... .....9020...10...20.....30........sampling algorithm progress: [%]: .20........20........60........40.100..........sampling algorithm progress: [%]: .90........20...Warning: Block ........100.......70unknown_M is not significant enough, removed from profile. .Warning: Block unknown_N is not significant enough, removed from profile. Warning: Block unknown_O is not significant enough, removed from profile. ...Warning: Block unknown_T is not significant enough, removed from profile. ........ 70............30....sampling algorithm progress: [%]: ....60.405050......examining piece 1..11570 (11570 bp) ....40..........10................viterbi algorithm progress: [%]: .............20.......30................4050.....70......30......50.............................30.....20..80.............40...70....90..50.........examining piece 1..9364 (9364 bp) .20...........viterbi algorithm progress: [%]: 60......60...................1040......30....... ....40.60.......sampling algorithm progress: [%]: ...................50............30.................30...................50....50....80.........10......30..............40.......50..10.......60.100.5040...........................80......30....70..60.............................80.....................80...30..........................50.......70..........50..50.................. .60...6040.50.....40....50......60.....60.10.40.....70............30......70.............20..30..60.80.sampling algorithm progress: [%]: ..50...........................70.......................100........50.1020.40....90........70..........30..30.........90 ..10.60.........................90....9060.......70...10............40..............20...40...90...............80.................................60.....60...............80.......60.40.....................................30.100...... ......90100sampling algorithm progress: [%]: .......10..........90.......40............................5040.50...........60............70......100.. .....80..7040.........20.........4010080100. 70.......80......70.40.....8060.40.. .80....50........30.5070...80............... ..............50........examining piece 1..6736 (6736 bp) .30.......viterbi algorithm progress: [%]: ............................30.............90......................60Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_K is not significant enough, removed from profile. ......................100.208080........60..examining piece 1..2484 (2484 bp) .....70..70..................4070..50...10.....60....50............40.......viterbi algorithm progress: [%]: .examining piece 1..13838 (13838 bp) ....70...50..50.....60...20.60...70.....................40...viterbi algorithm progress: [%]: ...............9080...... ..............80.......50....................100...10.....examining piece 1..3517 (3517 bp) .........viterbi algorithm progress: [%]: .........50..........90.....50..20.. .90...70..90....80.....60............80..20...20....examining piece ....sampling algorithm progress: [%]: ......................50....50..90.......60.....60.........70..50.70...............80............30...................70.....100.....60... ...examining piece 1..1493 (1493 bp) .viterbi algorithm progress: [%]: ...80............................90.........20......10..701........7297. (...70.......7297 bp) ......70....viterbi algorithm progress: [%]: ...........................................60.60.................60.....9080..80....Warning: Block unknown_A is not significant enough, removed from profile. Warning: Block unknown_B is not significant enough, removed from profile. ......10090... ........10...............examining piece .................80100..........3080.........100............10.80.........80....15090.90.........70.. ...70...30..........10.....5060.100.20..90..100.70. .....30.......100.80.6060.... .......... ..examining piece 1..2334 (2334 bp) .viterbi algorithm progress: [%]: ...80.........60..sampling algorithm progress: [%]: ..60...Warning: Block unknown_B is not significant enough, removed from profile. . Warning: Block unknown_E is not significant enough, removed from profile. ...............sampling algorithm progress: [%]: .......30.9104.........70.... (9104 bp) .......viterbi algorithm progress: [%]: ............10..........examining piece 1..2356 (2356 bp) ...viterbi algorithm progress: [%]: ...............100...60..sampling algorithm progress: [%]: ......sampling algorithm progress: [%]: ..90..30.......2090....................80..20... ............100..........90...90........90.........30..sampling algorithm progress: [%]: ... .80.......................70.40.10.70.............40.....................................100. ............10................70..10.30sampling algorithm progress: [%]: ......60.........40...............40..100...30100....100..... .10.. ...............7010.40...............9090..........10...........40...10.....100.......................20....30.................80....90..........90.... ....2020.......40.....examining piece 1..6881 (6881 bp) .................Warning: Block unknown_J is not significant enough, removed from profile. ....60.Warning: Block unknown_N is not significant enough, removed from profile. ..........50..............90..20.examining piece 1..8105 (8105 bp) ..............60...viterbi algorithm progress: [%]: .......50.....40.20..20..examining piece 1..8874 (8874 bp) ..70...viterbi algorithm progress: [%]: ........viterbi algorithm progress: [%]: ............1007080........................90.Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_C is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .30...Warning: Block unknown_H is not significant enough, removed from profile. .................10.......30100..80..... 20.10.....sampling algorithm progress: [%]: .......40..........30.........10......9020..40.................20..............examining piece 1..3219 (3219 bp) .....50..........30.100.......50....10.......6080....Warning: Block unknown_J is not significant enough, removed from profile. Warning: Block unknown_K is not significant enough, removed from profile. .Warning: Block unknown_L is not significant enough, removed from profile. ......1009080.... ...70..80viterbi algorithm progress: [%]: ..........40.90.....6040........examining piece 1..9697 (9697 bp) ...................100.......80.........30.........70..........50.10.......50..60........40........ .....40.50.........70...... ..30...........7020.....40..........50.... ........40........20.70.............100...viterbi algorithm progress: [%]: ..........sampling algorithm progress: [%]: .60..70.50...70..20..........20......90........5060............... .60...........50......90........100..................100.....sampling algorithm progress: [%]: ................... 30...............................70.......Warning: Block unknown_B is not significant enough, removed from profile. ................30......examining piece 1..2606 (2606 bp) ....viterbi algorithm progress: [%]: ..30....80..80examining piece 1..4756 (4756 bp) .........viterbi algorithm progress: [%]: .........10........40....80.............90.80....70.40sampling algorithm progress: [%]: 30......20.........................7080100...100.....90......50Warning: Block .... ....unknown_B. is not significant enough, removed from profile. .............30...50.....Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_E is not significant enough, removed from profile. .....................60.5070examining piece 1..15438 (15438 bp) .......10........30100..............viterbi algorithm progress: [%]: .....80.................... 5010 ...40..40.....70.....80............80.............90.100...10........90....examining piece 1..12340 (12340 bp) ..10.........8060... ...........60......Warning: Block unknown_A is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. ...100..Warning: Block unknown_I is not significant enough, removed from profile. ......................20.....60....10.............80..........5050100..........viterbi algorithm progress: [%]: 90................ .90..30 60.40.examining piece .......90.....sampling algorithm progress: [%]: .70...........50....100.. .Warning: Block unknown_A is not significant enough, removed from profile. .......examining piece 1..6782 (6782 bp) 100...1..18964 (18964 bp).60...viterbi algorithm progress: [%]: ........10.......20.....90....... ...... 10examining piece 1..2329 (2329 bp) ..20viterbi algorithm progress: [%]: ..20............60........100...sampling algorithm progress: [%]: .80.viterbi algorithm progress: [%]: .......................10..............70.......20......100.......80.40......80................................examining piece 1..7115 (7115 bp) ..60...6060. viterbi algorithm progress: [%]: ....30...30.......Warning: Block unknown_B is not significant enough, removed from profile. ...3080Warning: Block unknown_G is not significant enough, removed from profile. ........................ ...................60examining piece 1..3852 (3852 bp) ..sampling algorithm progress: [%]: .viterbi algorithm progress: [%]: .............40....70..............90.examining piece .40100...70.....90..30 ....10...........140...................100........40.............. .50........7090...................10.70..50100.40..90..3260...70.... ....80.....20.............. (...Warning: Block .............50.10...........3260................90.........20.....30.10.80.........unknown_F is not significant enough, removed from profile. ....Warning: Block ...............10.50. bp) viterbi algorithm progress: [%]: ...................20...90unknown_L....20......examining piece .1..2485 (2485 bp) .......viterbi algorithm progress: [%]: ............70..50.....20..... is not significant enough, removed from profile. .....examining piece Warning: Block .1...10...50.30..........unknown_A.........2502 (2502 bp) .viterbi algorithm progress: [%]: .........80..............................examining piece ...60.4080..1..2811 (2811 bp) .viterbi algorithm progress: [%]: 70..............50.. is not significant enough, removed from profile. 1030Warning: Block unknown_B is not significant enough, removed from profile. ...Warning: Block unknown_H is not significant enough, removed from profile. ...........................80.......30....2010080.40...10................100.20 90.....60...50..........100..90........ ..........................30..........9060...40sampling algorithm progress: [%]: .examining piece .150......90...............80.....10196.....70.100..... (......... .....10196. bp) .....40......20..viterbi algorithm progress: [%]: ..60..............60....70...................70......80...........90.......80....1010..........Warning: Block .... .......40.........unknown_D is not significant enough, removed from profile. .....Warning: Block unknown_K is not significant enough, removed from profile. .......9060...90.100...20........10090...100..70... ............100.. .sampling algorithm progress: [%]: .......20.........80...3040............ .........30.......10....20....40.10.10 ....1090..............2070.......................30...examining piece ..1..5092 (5092 bp) .....viterbi algorithm progress: [%]: ..80804050...................10.....60..........100.........60...........................100.........................50.................Warning: Block ............70..50........90examining piece 1..3105 (3105 bp) sampling algorithm progress: [%]: .....20viterbi algorithm progress: [%]: .examining piece 1284..7952 (6669 bp) ...80.viterbi algorithm progress: [%]: ...30..5030..... . ....30......Warning: Block unknown_F is not significant enough, removed from profile. ............90.....90...100....unknown_A..................100.40 ..........50..90.100100........ is not significant enough, removed from profile. ...........Warning: Block unknown_O is not significant enough, removed from profile. .......50........80....90......................sampling algorithm progress: [%]: ....5070.4070....... .................Warning: Block .unknown_B is not significant enough, removed from profile. .Warning: Block unknown_D is not significant enough, removed from profile. examining piece ...examining piece 306931..50 .........................20examining piece 1..2666 (2666 bp) viterbi algorithm progress: [%]: ..30.40......10...20......Warning: Block .7718......unknown_E..22910.100..100.. .9070... is not significant enough, removed from profile. ....20.80.40. (. .......Warning: Block .20100. (..... ...examining piece .......60unknown_G20.......7718...22218.10... ...sampling algorithm progress: [%]: .1..8079 (8079 bp) ..60...viterbi algorithm progress: [%]: ..... is not significant enough, removed from profile. . bp). sampling algorithm progress: [%]: .....................viterbi algorithm progress: [%]: . bp).......60............30.examining piece .....Warning: Block .....90..100..90.....viterbi algorithm progress: [%]: ..................80.Warning: Block unknown_B is not significant enough, removed from profile. ..3050. .80...........sampling algorithm progress: [%]: ......60........60.50........examining piece 1..3456 (3456 bp) ...20.10..1....10...unknown_C........60...........100.80 is not significant enough, removed from profile. ..10...........10..sampling algorithm progress: [%]: viterbi algorithm progress: [%]: 10 ..1274..... (..........10......................Warning: Block unknown_B is not significant enough, removed from profile. .100.......100.Warning: Block ....60....1274.....60....... examining piece 1..1794 (1794 bp) ...viterbi algorithm progress: [%]: ...............70..........unknown_F.. is not significant enough, removed from profile. 70.. bp).........30.50...... .viterbi algorithm progress: [%]: ....10..10...........80.........................60....90..........20..10...examining piece .............30.60......1...4604 (4604 .50.1040.30............30 bp)90......60..4020........70.......70..100.....examining piece ..........70.............20. .4030.30........viterbi algorithm progress: [%]: .... ...................120.9070..........60.....3493 (3493 bp) ....viterbi algorithm progress: [%]: ....10........40..........20.............10.......70...60.................1010..30..........90.........20..30...........10............40..sampling algorithm progress: [%]: .........70..20...20...........2050...................90......10.....70.....20.......20............................40..............7050........20..............30....80.80.............................20...40....................40.....70..............8090..40.....................................20............80.......30....sampling algorithm progress: [%]: 30........10.....100..50..............50.......60.30...50..50.80......80....100......10........... .6020.....................30.............60.....80.............................................30.30.60......40........20.40........90.30....70...100......40......................70.......40.......50....50...20.............. .................10080.60.60..100.30.30.40....examining piece .10....90...100.......1...2762 (2762 bp) ..viterbi algorithm progress: [%]: ......90...................... ...80.............40.40 .....70................ ............80...............70.......30..20 ..40...60....90.......8090.20..100...........sampling algorithm progress: [%]: .........20....90......40...............90..........examining piece .............100..70..40...........40.40....40...........60......180.......70..... .....................30.... 100.....6446 (6446 bp) .....10.100........100.9080.. ...sampling algorithm progress: [%]: .70.......100.....sampling algorithm progress: [%]: .......... .......viterbi algorithm progress: [%]: ..............sampling algorithm progress: [%]: .......... .50..40......70...........................................50.50................30...........80sampling algorithm progress: [%]: .........50.......50.................examining piece ....5030..20.....60100....Warning: Block unknown_O is not significant enough, removed from profile. ..100.....examining piece 1..7663 (7663 bp) .....100..viterbi algorithm progress: [%]: ...........90...examining piece .80.7070sampling algorithm progress: [%]: sampling algorithm progress: [%]: .80....... ..1.50..40.....80........sampling algorithm progress: [%]: 2558.30.30......10......20............. (...10.40..50150..10..10..sampling algorithm progress: [%]: 60..10....2558 bp) .....viterbi algorithm progress: [%]: ............80........50...70..90..50........60.....90......................... ....60....100.....3474.........30................10... (..90.3474 bp) .................50...................9060..................20...............viterbi algorithm progress: [%]: ..... ......70.30...............30......10.......80....................60..sampling algorithm progress: [%]: .....................50...30........10..90.......7090........2070............40................................70....60......................40..................................................2070...60....1080.100.....100100..........6020...........40.....50................60... 80.90..... ..............40........... ..50....6020.1040........80..6020......sampling algorithm progress: [%]: 50.....10....30.....30.20.....60............10..................................70.........80...........10......10........70....30...........sampling algorithm progress: [%]: ................sampling algorithm progress: [%]: .......70....40...........80...100.40..6070....................50.....50 .80.70.......80................30..........90....90........100..30....................9010....30.............20......90100......100 .............40............4010090.. ...20....70....7090.......5090........... .......50.........20..................30....80............ ....6020...60.......................Warning: Block unknown_B is not significant enough, removed from profile. ....sampling algorithm progress: [%]: ..sampling algorithm progress: [%]: ...............60..........sampling algorithm progress: [%]: examining piece 1..3920 (3920 bp) .....viterbi algorithm progress: [%]: .....8080....50100....100.......... ..... ..50....70.........60..100.......100..20....100......10... .....10.......70......5080........... ..............................sampling algorithm progress: [%]: ...30..90.. .60405040..........................90..............................40..30..........90...........70...............50.40............9050...................10..........30............70......20............1040.80...10..........100......................50............20......... ..60.........80...40........70.20........80...50..60..............sampling algorithm progress: [%]: ........90.80......100.....80....10...........50.....80.80..10.20.100.........30..... 20..................100304090.30........... .....sampling algorithm progress: [%]: .......................10.90...sampling algorithm progress: [%]: ....80.40.sampling algorithm progress: [%]: .............. ...............50.................100...10.......50..........60.......60........90.30......20.........30...... ..........60....1020....20.......10020.60............sampling algorithm progress: [%]: .......40. ......7080......90.30..sampling algorithm progress: [%]: .50.....60.........................................10........50.......10...40....60......40...20.........70...sampling algorithm progress: [%]: ..90..................100100...................70............. .70........9040.90.............sampling algorithm progress: [%]: .............1090............. ..........................40.....5030.........206060..50........................60.......40....90.............70....70.....................100.....70...........60...............10...sampling algorithm progress: [%]: ......30............70...........20.10.60....50...........30............80..........80.............80....20.........80...........60.70....30.80.........2060.... ...30.....80..........30....................40.100....70100.....60............20.......100........10.....sampling algorithm progress: [%]: ................... .....20...........30100......90........50....................9070...........20 100..20....40.....70......70.......sampling algorithm progress: [%]: .........40....... ..70.............90....40...30.................sampling algorithm progress: [%]: .........100.70 ...................sampling algorithm progress: [%]: ...30.......50.....90......70.....100..60.8030.........80.. .........100...90.... ...40..40..10010....50...30......40.90..40.............80........40..........30....... ...........50.....................60...........100............ ...30.8050....70................... .9010.......................30.............50............100... .................80.......80.......10..60...60......1040.....80..80...............40.....50......10.........sampling algorithm progress: [%]: 90.......70......60..sampling algorithm progress: [%]: .60...............60sampling algorithm progress: [%]: ....100.... 5080..90..............70...50.70.......................90..........20......100...............40..................... ...20.......80100..70.........50....50.........50.20...20....10... .............................100....sampling algorithm progress: [%]: ......2050............................ ...40...70...................8070.....90..........sampling algorithm progress: [%]: ............................40..80.60...90.......................60.......3010.20..........30...............................606080..6020.........................50..80.50......90....30......60....708030......70................1020.........50..80.90.........10...40.....sampling algorithm progress: [%]: ....70.......................70............60....90..90................90....80.........40....10070...................90..100......50........40...90....... .. ......................30..30..60..............10...........100..........60.... .70............80.30................90..............80100...50... 50........20.............70.......80..90........20......100................90. .90.........40......80......90.........90.....70100. .......90..70..........40.90....100..50. ....80...............................100.........................100........100.100....100. .....70. ......... ...50.......70...40.... .sampling algorithm progress: [%]: 30.....80.....................50..............4090.40...10...60...............60...........60........80.90.......20.....80..............100..............90.......30.30..........30..80...60......90.....100... ............................4040........... ...100....100........70...............50.......50...........100....... ....60..... 50................6080.sampling algorithm progress: [%]: ..100.... 901090..... 70.100..........50.20.4080...100......6070...................9050............50..80...60. ...................80...90.100.70.....................100......... ...........60....100.....90........ ......70...100.....60 .....70...sampling algorithm progress: [%]: .......60.......10050....100. ...100.70........... ........... ....................80.60....... 70....80..........90.80..........80.80...10............................90................80..60.........30..............90.70.100..90. .................70........90.....90.................10...........100...40...... ..100........70..90...100100 ... .. .........100.... 60..80...8020....60..70......20.................80..40..sampling algorithm progress: [%]: ...........100......... ...2090......90........................90...7090........30.............100............ .....50....100..100... .50 ..30.............10.100.70......8040..................30.......60.. .40....................50...........................20.sampling algorithm progress: [%]: 50...........7080...60..........90...............100..60...........40..60 ........10.......80....80...30.......................70........70.........90...100.....20...7070. ..90...................50...80...sampling algorithm progress: [%]: 40......80.............................30100........ ....100.....90.... ........90..........50..80...........40100... .....60..90.10...100.. ...............5060.....................90............60......70...70....20..................8070...100...... .....80............10080...80.30..... ............90....90...........................40100100. 90.90...............50.........100.. ....10060.. ......70........80........90........sampling algorithm progress: [%]: 100 ........10........20........30........40........50........60........70........80........90........100