/gannet/Atumefaciens/20190108_oly_maker_id_mapping

Simplify MAKER contig names using MAKER's built in ID mapping script on Olurida_v081 genome annotation.

MAKER annotation and SNAP gene predictions:

https://robertslab.github.io/sams-notebook/2018/11/27/Annotation-Olurida_v081-MAKER-on-Mox.html

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FILES

- 20181127_oly_genome.map: Mapping file of MAKER contig names to new names.

- 20181127_oly_genome_snap02.all.maker.proteins.renamed.fasta: Protein FastA file with new contig names.

- 20181127_oly_genome_snap02.all.maker.transcripts.renamed.fasta: Transcript FastA file with new contig names.

- 20181127_oly_genome_snap02.all.renamed.gff: GFF file with new contig names.

- 20190108_oly_maker_id_mapping.sh: SBATCH job submission script for Mox.

- slurm-565458.out: SLURM output file (i.e. stderr/stdout)

- system_path.log: Contents of Sam's system $PATH on Mox.


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Notebook:


https://robertslab.github.io/sams-notebook/2019/01/08/Annotation-Olurida_v081-MAKER-ID-Mapping.html